CmaCh01G003590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G003590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Calcium binding protein
Location	Cma_Chr01 : 1787193 .. 1787444 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCACTGAACGGAATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCATTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAAGCCTTTTAG

mRNA sequence

ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCACTGAACGGAATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCATTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAAGCCTTTTAG

Coding sequence (CDS)

ATGGCAGACAATGGCGTAGACTCAGCCGAGTGCGAGAGGATTTTCAAGCGATTCGATGCGAACGGCGACGGGCAGATCTCGGCGACGGAGCTCGGCGACGCACTGAACGGAATCGGAGTGAGCTCTGAAGATGCGAAGAGGATGATGGACGCCATTGATAAAGATGGCGACGGCTTCATTTCATTCCAAGAATTCTTCGAGTTTGCCAAGGATAATCGCGCTTTGATGAAGGATTTTGCCAAAGCCTTTTAG

Protein sequence

MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFISFQEFFEFAKDNRALMKDFAKAF

Homology

[Close]

BLAST of CmaCh01G003590 vs. Swiss-Prot
Match: CML28_ARATH (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana GN=CML28 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-21
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA ELGDAL  +G V+ ED KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of CmaCh01G003590 vs. Swiss-Prot
Match: POLC2_TOBAC (Polcalcin Nic t 2 OS=Nicotiana tabacum GN=Nict2 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 54/83 (65.06%), Postives = 64/83 (77.11%), Query Frame = 1


Query: 2  ADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFI 61
          AD+  D A+ ERIFKRFDANGDGQISATELG+ L  +G V+ E+ K MMD ID + DGFI
Sbjct: 4  ADDPQDIADRERIFKRFDANGDGQISATELGETLQTLGSVTPEEVKYMMDEIDTNKDGFI 63

Query: 62 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEF EFA+ NR L++D AK F
Sbjct: 64 SFQEFIEFARANRGLIRDVAKIF 86

[Close]

BLAST of CmaCh01G003590 vs. Swiss-Prot
Match: POLC2_BRANA (Polcalcin Bra n 2 OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA+ELGDAL  +G V+ +D KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of CmaCh01G003590 vs. Swiss-Prot
Match: POLC2_BRACM (Polcalcin Bra r 2 OS=Brassica campestris PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA+ELGDAL  +G V+ +D KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of CmaCh01G003590 vs. Swiss-Prot
Match: POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-20
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1


Query: 3  DNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFIS 62
          D+  D AE ERIFKRFDANGDG+ISA ELG+AL  +G ++ ++ K MM  ID DGDGFIS
Sbjct: 4  DHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFIS 63

Query: 63 FQEFFEFAKDNRALMKDFAKAF 84
          FQEF +F + NR L+KD AK F
Sbjct: 64 FQEFTDFGRANRGLLKDVAKIF 85

[Close]

BLAST of CmaCh01G003590 vs. TrEMBL
Match: A0A0A0L775_CUCSA (Putative calcium-binding protein CML28 OS=Cucumis sativus GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-33
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CmaCh01G003590 vs. TrEMBL
Match: A0A164UEU9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025870 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-21
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 7  DSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEF 66
          D+AE ERIFK+FDANGDGQIS+TELGDAL  +G V+ ++ KRMM  ID DGDG+ISFQEF
Sbjct: 5  DAAEHERIFKKFDANGDGQISSTELGDALQNLGNVTVDEVKRMMSEIDTDGDGYISFQEF 64

Query: 67 FEFAKDNRALMKDFAKAF 84
           EFAK N+ LMKD AK F
Sbjct: 65 TEFAKANKGLMKDVAKVF 82

[Close]

BLAST of CmaCh01G003590 vs. TrEMBL
Match: I1MBX4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G216000 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MA++  D A+ ERIFKRFDANGDGQIS+ ELG+AL  +G V++E+ KRMM+ ID DGDG+
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF EFAK NR L+KD AK F
Sbjct: 61 ISYQEFTEFAKANRGLVKDVAKIF 84

[Close]

BLAST of CmaCh01G003590 vs. TrEMBL
Match: A0A0B2S5H4_GLYSO (Polcalcin Nic t 1 OS=Glycine soja GN=glysoja_016839 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MA++  D A+ ERIFKRFDANGDGQIS+ ELG+AL  +G V++E+ KRMM+ ID DGDG+
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF EFAK NR L+KD AK F
Sbjct: 61 ISYQEFTEFAKANRGLVKDVAKIF 84

[Close]

BLAST of CmaCh01G003590 vs. TrEMBL
Match: F6HKV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08830 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-20
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MADN  D  E ERIFKRFD NGDG+IS+TELGDAL  +G VS+++ +RMM  ID DGDGF
Sbjct: 1  MADNPQDQEERERIFKRFDTNGDGKISSTELGDALKTLGSVSADEVQRMMQEIDTDGDGF 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          ISF EF +F + NR LMKD AK F
Sbjct: 61 ISFDEFADFHRANRGLMKDVAKVF 84

[Close]

BLAST of CmaCh01G003590 vs. TAIR10
Match: AT3G03430.1 (AT3G03430.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.3e-22
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA ELGDAL  +G V+ ED KRMM  ID DGDG+
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of CmaCh01G003590 vs. TAIR10
Match: AT5G17480.1 (AT5G17480.1 pollen calcium-binding protein 1)

HSP 1 Score: 93.2 bits (230), Expect = 8.1e-20
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MAD   + AE +RIFK+FDANGDG+ISA EL +AL  +G V+++D KRMM  ID DGDG 
Sbjct: 1  MAD-ATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGN 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF +FA  NR LMKD AK F
Sbjct: 61 ISYQEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of CmaCh01G003590 vs. TAIR10
Match: AT1G24620.1 (AT1G24620.1 EF hand calcium-binding protein family)

HSP 1 Score: 60.1 bits (144), Expect = 7.6e-10
Identity = 31/79 (39.24%), Postives = 49/79 (62.03%), Query Frame = 1


Query: 10  ECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQEFFE 69
           E E +FK+FD NGDG+IS+ ELG  +  +G  V  E+ ++ +  ID+ GDG+I+F+EF E
Sbjct: 37  ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

Query: 70  F---AKDNRALMKDFAKAF 84
                 D   ++++   AF
Sbjct: 97  LNTKGMDQNDVLENLKDAF 115

[Close]

BLAST of CmaCh01G003590 vs. TAIR10
Match: AT3G07490.1 (AT3G07490.1 ARF-GAP domain 11)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 6  VDSAECERIFKRFDANGDGQISATELGDALNGIG--VSSEDAKRMMDAIDKDGDGFISFQ 65
          +D AE  RIF+ FD NGDG+I+  EL D+L  +G  +  +D  +M++ ID +GDG++  +
Sbjct: 1  MDQAELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIE 60

Query: 66 EF---FEFAKDNRALMKDFAKAF 84
          EF   ++   + R   +D  +AF
Sbjct: 61 EFGGLYQTIMEERDEEEDMREAF 83

[Close]

BLAST of CmaCh01G003590 vs. TAIR10
Match: AT1G73630.1 (AT1G73630.1 EF hand calcium-binding protein family)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 10 ECERIFKRFDANGDGQISATELGDALNGIGVS--SEDAKRMMDAIDKDGDGFISFQEFFE 69
          E +++F +FDANGDG+IS +ELG+    +G S   E+  R++D ID D DGFI+ +EF  
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFAT 79

Query: 70 FAKDNRALMK 78
            + + + ++
Sbjct: 80 ICRSSSSAVE 89

[Close]

BLAST of CmaCh01G003590 vs. NCBI nr
Match: gi|659114464|ref|XP_008457063.1| (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-34
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60
          MAD+GV+SA+CERIFKRFDANGDG+ISATELGDALNG GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEF +FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFSDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CmaCh01G003590 vs. NCBI nr
Match: gi|449464146|ref|XP_004149790.1| (PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.6e-33
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFEFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CmaCh01G003590 vs. NCBI nr
Match: gi|1021031010|gb|KZM88795.1| (hypothetical protein DCAR_025870 [Daucus carota subsp. sativus])

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-20
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 7  DSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGFISFQEF 66
          D+AE ERIFK+FDANGDGQIS+TELGDAL  +G V+ ++ KRMM  ID DGDG+ISFQEF
Sbjct: 5  DAAEHERIFKKFDANGDGQISSTELGDALQNLGNVTVDEVKRMMSEIDTDGDGYISFQEF 64

Query: 67 FEFAKDNRALMKDFAKAF 84
           EFAK N+ LMKD AK F
Sbjct: 65 TEFAKANKGLMKDVAKVF 82

[Close]

BLAST of CmaCh01G003590 vs. NCBI nr
Match: gi|356553301|ref|XP_003544995.1| (PREDICTED: polcalcin Nic t 1 [Glycine max])

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 55/84 (65.48%), Postives = 68/84 (80.95%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MA++  D A+ ERIFKRFDANGDGQIS+ ELG+AL  +G V++E+ KRMM+ ID DGDG+
Sbjct: 1  MAEDPQDVADRERIFKRFDANGDGQISSAELGEALKALGSVTAEEVKRMMEEIDTDGDGY 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          IS+QEF EFAK NR L+KD AK F
Sbjct: 61 ISYQEFTEFAKANRGLVKDVAKIF 84

[Close]

BLAST of CmaCh01G003590 vs. NCBI nr
Match: gi|225441878|ref|XP_002284297.1| (PREDICTED: polcalcin Che a 3 [Vitis vinifera])

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-20
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIG-VSSEDAKRMMDAIDKDGDGF 60
          MADN  D  E ERIFKRFD NGDG+IS+TELGDAL  +G VS+++ +RMM  ID DGDGF
Sbjct: 1  MADNPQDQEERERIFKRFDTNGDGKISSTELGDALKTLGSVSADEVQRMMQEIDTDGDGF 60

Query: 61 ISFQEFFEFAKDNRALMKDFAKAF 84
          ISF EF +F + NR LMKD AK F
Sbjct: 61 ISFDEFADFHRANRGLMKDVAKVF 84

The following BLAST results are available for this feature:

BLAST of CmaCh01G003590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CML28_ARATH	2.4e-21	65.48	Probable calcium-binding protein CML28 OS=Arabidopsis thaliana GN=CML28 PE=3 SV=...	[more]
POLC2_TOBAC	6.9e-21	65.06	Polcalcin Nic t 2 OS=Nicotiana tabacum GN=Nict2 PE=1 SV=1	[more]
POLC2_BRANA	6.9e-21	64.29	Polcalcin Bra n 2 OS=Brassica napus PE=1 SV=1	[more]
POLC2_BRACM	6.9e-21	64.29	Polcalcin Bra r 2 OS=Brassica campestris PE=1 SV=1	[more]
POLC4_BETPN	3.4e-20	62.20	Polcalcin Bet v 4 OS=Betula pendula GN=BETV4 PE=1 SV=1	[more]

BLAST of CmaCh01G003590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L775_CUCSA	3.2e-33	89.16	Putative calcium-binding protein CML28 OS=Cucumis sativus GN=Csa_3G345360 PE=4 S...	[more]
A0A164UEU9_DAUCA	8.2e-21	70.51	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025870 PE=4 SV=1	[more]
I1MBX4_SOYBN	1.1e-20	65.48	Uncharacterized protein OS=Glycine max GN=GLYMA_14G216000 PE=4 SV=1	[more]
A0A0B2S5H4_GLYSO	1.1e-20	65.48	Polcalcin Nic t 1 OS=Glycine soja GN=glysoja_016839 PE=4 SV=1	[more]
F6HKV0_VITVI	3.1e-20	65.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g08830 PE=4 SV=...	[more]

BLAST of CmaCh01G003590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03430.1	1.3e-22	65.48	Calcium-binding EF-hand family protein	[more]
AT5G17480.1	8.1e-20	61.90	pollen calcium-binding protein 1	[more]
AT1G24620.1	7.6e-10	39.24	EF hand calcium-binding protein family	[more]
AT3G07490.1	1.7e-09	37.35	ARF-GAP domain 11	[more]
AT1G73630.1	2.2e-09	40.00	EF hand calcium-binding protein family	[more]

BLAST of CmaCh01G003590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114464\|ref\|XP_008457063.1\|	3.2e-34	90.36	PREDICTED: polcalcin Bra n 2-like [Cucumis melo]	[more]
gi\|449464146\|ref\|XP_004149790.1\|	4.6e-33	89.16	PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus]	[more]
gi\|1021031010\|gb\|KZM88795.1\|	1.2e-20	70.51	hypothetical protein DCAR_025870 [Daucus carota subsp. sativus]	[more]
gi\|356553301\|ref\|XP_003544995.1\|	1.5e-20	65.48	PREDICTED: polcalcin Nic t 1 [Glycine max]	[more]
gi\|225441878\|ref\|XP_002284297.1\|	4.5e-20	65.48	PREDICTED: polcalcin Che a 3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G003590.1	CmaCh01G003590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 11..69 score: 9.6
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 10..38 score: 2.1E-4coord: 44..72 score: 3.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 43..75 score: 12.728coord: 6..41 score: 14
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 8..76 score: 5.9
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 8..69 score: 8.9
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 53..65 score: -coord: 19..31 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 10..83 score: 1.8
None	No IPR available	PANTHER	PTHR10891:SF605	CALCIUM-BINDING PROTEIN CML25-RELATED	coord: 10..83 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G003590	Cucsa.012590	Cucumber (Gy14) v1	cgycmaB0551
CmaCh01G003590	Cla013179	Watermelon (97103) v1	cmawmB434
CmaCh01G003590	Csa3G345360	Cucumber (Chinese Long) v2	cmacuB455
CmaCh01G003590	MELO3C020277	Melon (DHL92) v3.5.1	cmameB431
CmaCh01G003590	ClCG05G011030	Watermelon (Charleston Gray)	cmawcgB407
CmaCh01G003590	CSPI03G21770	Wild cucumber (PI 183967)	cmacpiB458
CmaCh01G003590	CmoCh01G003750	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G003590	CmoCh14G008630	Cucurbita moschata (Rifu)	cmacmoB462
CmaCh01G003590	Lsi05G003120	Bottle gourd (USVL1VR-Ls)	cmalsiB440
CmaCh01G003590	Cp4.1LG02g16720	Cucurbita pepo (Zucchini)	cmacpeB491
CmaCh01G003590	Cp4.1LG03g05820	Cucurbita pepo (Zucchini)	cmacpeB494
CmaCh01G003590	MELO3C020277.2	Melon (DHL92) v3.6.1	cmamedB496
CmaCh01G003590	CsaV3_3G021560	Cucumber (Chinese Long) v3	cmacucB0547
CmaCh01G003590	Bhi01G001354	Wax gourd	cmawgoB0559
CmaCh01G003590	Bhi01G001514	Wax gourd	cmawgoB0562
CmaCh01G003590	CsGy3G020960	Cucumber (Gy14) v2	cgybcmaB368
CmaCh01G003590	Carg07447	Silver-seed gourd	carcmaB1059
CmaCh01G003590	Carg24222	Silver-seed gourd	carcmaB0241

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G003590	CmaCh14G008490	Cucurbita maxima (Rimu)	cmacmaB255

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G003590	Watermelon (97103) v2	cmawmbB473