MELO3C020277.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C020277.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCalcium binding protein
Locationchr06 : 14988709 .. 14989160 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGGGAAGAAAGAAAGAGAAATAAAAAAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGATTGCCCTAAGTTCCAGATCAATTATCCCTATCAGAATTAGCTGCACAAAAATGGCAGATAGTGGCGTAAACTCAGCCGATTGCGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGCGATGCTTTGAACGGGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGCGATGGCTATATTTCCTTCCAAGAATTCTCCGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAGATTTTGTTGTTATTGTTTTTGTTTTTGTTTTTTTTTTTGTTTTGTTTTGTTTTAATGGAAGATCTGATTATATGAATA

mRNA sequence

GAAGAAGGGAAGAAAGAAAGAGAAATAAAAAAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGATTGCCCTAAGTTCCAGATCAATTATCCCTATCAGAATTAGCTGCACAAAAATGGCAGATAGTGGCGTAAACTCAGCCGATTGCGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGCGATGCTTTGAACGGGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGCGATGGCTATATTTCCTTCCAAGAATTCTCCGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAGATTTTGTTGTTATTGTTTTTGTTTTTGTTTTTTTTTTTGTTTTGTTTTGTTTTAATGGAAGATCTGATTATATGAATA

Coding sequence (CDS)

AGAAGGGAAGAAAGAAAGAGAAATAAAAAAAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGATTGCCCTAAGTTCCAGATCAATTATCCCTATCAGAATTAGCTGCACAAAAATGGCAGATAGTGGCGTAAACTCAGCCGATTGCGAGAGAATTTTCAAACGATTCGATGCCAATGGCGACGGCAAGATCTCGGCAACAGAGCTGGGCGATGCTTTGAACGGGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGCGATGGCTATATTTCCTTCCAAGAATTCTCCGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAG

Protein sequence

RREERKRNKKKKEEEEEEEEEEVIALSSRSIIPIRISCTKMADSGVNSADCERIFKRFDANGDGKISATELGDALNGFGVSSEDAKRMMDAIDKDGDGYISFQEFSDFAKDNRALMKDFAKAF
Homology
[Close]
BLAST of MELO3C020277.2 vs. NCBI nr
Match: XP_016902062.1 (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 100
           MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61  XXXXXXXXAKDNRALMKDFAKAF 83

[Close]
BLAST of MELO3C020277.2 vs. NCBI nr
Match: XP_022948513.1 (probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 probable calcium-binding protein CML28 [Cucurbita maxima] >XP_023523664.1 probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 100
           MAD+GV+SA+CERIFKRFDANGDG+ISATELGDALNG XXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIXXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAKDNRALMKDFAKAF 124
           XXXX    AKDNRALMKDFAKAF
Sbjct: 61  XXXXFFEFAKDNRALMKDFAKAF 83

[Close]
BLAST of MELO3C020277.2 vs. NCBI nr
Match: XP_004149790.1 (PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus] >KGN57835.1 putative calcium-binding protein CML28 [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 100
           MADSGVNSAD ERIFKRFDANGDGKISATELGDALN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61  XXXXXXXXAKDNRALMKDFAKAF 83

[Close]
BLAST of MELO3C020277.2 vs. NCBI nr
Match: XP_022982739.1 (polcalcin Syr v 3-like [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 4.4e-12
Identity = 71/88 (80.68%), Postives = 78/88 (88.64%), Query Frame = 0 

Query: 36  ISCTKMADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXX 95
           I   +MA+S +++A+CERIFKRFDANGDG ISA ELGDALNG  XXXXXXXXXXXXXXXX
Sbjct: 25  IEAVEMAESDISAAECERIFKRFDANGDGMISAAELGDALNGLGXXXXXXXXXXXXXXXX 84

Query: 96  XXXXXXXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXXXXXXXX  K+NRALMKDFAKAF
Sbjct: 85  XXXXXXXXXXXXFTKENRALMKDFAKAF 112

[Close]
BLAST of MELO3C020277.2 vs. NCBI nr
Match: XP_023526616.1 (probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 100
           MA+S V++A+CERIFKRFDANGDG ISA EL DALNG  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MAESDVSAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXXX AKDNRALMKDFAKAF
Sbjct: 61  XXXXXXXFAKDNRALMKDFAKAF 83

[Close]
BLAST of MELO3C020277.2 vs. TAIR10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.0e-07
Identity = 36/84 (42.86%), Postives = 40/84 (47.62%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDAL-NGXXXXXXXXXXXXXXXXXXXXXX 100
           MAD+    A+ +RIFK+FDANGDGKISA ELGDAL N                       
Sbjct: 1   MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 101 XXXXXXXXXAKDNRALMKDFAKAF 124
                    A  NR LMKD AK F
Sbjct: 61  ISYQEFIDFASANRGLMKDVAKIF 83

[Close]
BLAST of MELO3C020277.2 vs. TAIR10
Match: AT5G17480.1 (pollen calcium-binding protein 1)

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0 

Query: 41 MADSGVNSADCERIFKRFDANGDGKISATELGDAL 76
          MAD+    A+ +RIFK+FDANGDGKISA EL +AL
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELEEAL 34

[Close]
BLAST of MELO3C020277.2 vs. Swiss-Prot
Match: sp|P69199|POLC2_BRACM (Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.5e-06
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDAL-NGXXXXXXXXXXXXXXXXXXXXXX 100
           MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL N              XXXXXXXXX
Sbjct: 1   MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAXXXXXXXXX 60

Query: 101 XXXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXX   A  NR LMKD AK F
Sbjct: 61  XXXXXXSDFASANRGLMKDVAKIF 83

[Close]
BLAST of MELO3C020277.2 vs. Swiss-Prot
Match: sp|P69198|POLC2_BRANA (Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.5e-06
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDAL-NGXXXXXXXXXXXXXXXXXXXXXX 100
           MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL N              XXXXXXXXX
Sbjct: 1   MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAXXXXXXXXX 60

Query: 101 XXXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXX   A  NR LMKD AK F
Sbjct: 61  XXXXXXSDFASANRGLMKDVAKIF 83

[Close]
BLAST of MELO3C020277.2 vs. Swiss-Prot
Match: sp|Q9SRP7|CML28_ARATH (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.2e-06
Identity = 36/84 (42.86%), Postives = 40/84 (47.62%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDAL-NGXXXXXXXXXXXXXXXXXXXXXX 100
           MAD+    A+ +RIFK+FDANGDGKISA ELGDAL N                       
Sbjct: 1   MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 101 XXXXXXXXXAKDNRALMKDFAKAF 124
                    A  NR LMKD AK F
Sbjct: 61  ISYQEFIDFASANRGLMKDVAKIF 83

[Close]
BLAST of MELO3C020277.2 vs. Swiss-Prot
Match: sp|Q8VWY7|POLC2_TOBAC (Polcalcin Nic t 2 OS=Nicotiana tabacum OX=4097 GN=Nict2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 9.4e-06
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 42 ADSGVNSADCERIFKRFDANGDGKISATELGDAL 76
          AD   + AD ERIFKRFDANGDG+ISATELG+ L
Sbjct: 4  ADDPQDIADRERIFKRFDANGDGQISATELGETL 37

[Close]
BLAST of MELO3C020277.2 vs. Swiss-Prot
Match: sp|Q84V36|POLC3_CHEAL (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 43 DSGVNSADCERIFKRFDANGDGKISATELGDAL 76
          D+  + AD ERIFKRFD NGDGKIS++ELGDAL
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDAL 37

[Close]
BLAST of MELO3C020277.2 vs. TrEMBL
Match: tr|A0A1S4E1G1|A0A1S4E1G1_CUCME (polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 100
           MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61  XXXXXXXXAKDNRALMKDFAKAF 83

[Close]
BLAST of MELO3C020277.2 vs. TrEMBL
Match: tr|A0A0A0L775|A0A0A0L775_CUCSA (Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 81/83 (97.59%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 41  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 100
           MADSGVNSAD ERIFKRFDANGDGKISATELGDALN XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAKDNRALMKDFAKAF 124
           XXXXXXXXAKDNRALMKDFAKAF
Sbjct: 61  XXXXXXXXAKDNRALMKDFAKAF 83

[Close]
BLAST of MELO3C020277.2 vs. TrEMBL
Match: tr|A0A2P4GR13|A0A2P4GR13_QUESU (Polcalcin bet v 4 OS=Quercus suber OX=58331 GN=CFP56_56695 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-06
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 41 MADSGVNSADCERIFKRFDANGDGKISATELGDAL 76
          MAD   N ADCERIFKRFDANGDGKIS  ELG+AL
Sbjct: 1  MADEAQNKADCERIFKRFDANGDGKISLAELGNAL 35

[Close]
BLAST of MELO3C020277.2 vs. TrEMBL
Match: tr|A0A2G9HP39|A0A2G9HP39_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08025 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 41 MADSGVNSADCERIFKRFDANGDGKISATELGDAL 76
          MAD   + AD ER+FKRFDANGDGKISATELGDAL
Sbjct: 1  MADDQQDVADWERLFKRFDANGDGKISATELGDAL 35

[Close]
BLAST of MELO3C020277.2 vs. TrEMBL
Match: tr|W9RDJ1|W9RDJ1_9ROSA (Polcalcin Syr v 3 OS=Morus notabilis OX=981085 GN=L484_006237 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-04
Identity = 27/36 (75.00%), Postives = 28/36 (77.78%), Query Frame = 0 

Query: 41 MADSGVNSADCERIFKRFDANGDGKISATELGDALN 77
          MA+     A CERIFKRFDANGDGKIS TEL DALN
Sbjct: 1  MAELTEERAQCERIFKRFDANGDGKISWTELADALN 36

The following BLAST results are available for this feature:
BLAST of MELO3C020277.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902062.11.7e-16100.00PREDICTED: polcalcin Bra n 2-like [Cucumis melo][more]
XP_022948513.11.2e-1489.16probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 prob... [more]
XP_004149790.11.6e-1497.59PREDICTED: probable calcium-binding protein CML28 [Cucumis sativus] >KGN57835.1 ... [more]
XP_022982739.14.4e-1280.68polcalcin Syr v 3-like [Cucurbita maxima][more]
XP_023526616.11.7e-1186.75probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C020277.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03430.14.0e-0742.86Calcium-binding EF-hand family protein[more]
AT5G17480.13.7e-0565.71pollen calcium-binding protein 1[more]
BLAST of MELO3C020277.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P69199|POLC2_BRACM5.5e-0660.71Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1[more]
sp|P69198|POLC2_BRANA5.5e-0660.71Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1[more]
sp|Q9SRP7|CML28_ARATH7.2e-0642.86Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 ... [more]
sp|Q8VWY7|POLC2_TOBAC9.4e-0673.53Polcalcin Nic t 2 OS=Nicotiana tabacum OX=4097 GN=Nict2 PE=1 SV=1[more]
sp|Q84V36|POLC3_CHEAL1.6e-0572.73Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1[more]
BLAST of MELO3C020277.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E1G1|A0A1S4E1G1_CUCME1.1e-16100.00polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1[more]
tr|A0A0A0L775|A0A0A0L775_CUCSA1.1e-1497.59Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G34536... [more]
tr|A0A2P4GR13|A0A2P4GR13_QUESU4.1e-0680.00Polcalcin bet v 4 OS=Quercus suber OX=58331 GN=CFP56_56695 PE=4 SV=1[more]
tr|A0A2G9HP39|A0A2G9HP39_9LAMI2.7e-0580.00Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08025 P... [more]
tr|W9RDJ1|W9RDJ1_9ROSA1.3e-0475.00Polcalcin Syr v 3 OS=Morus notabilis OX=981085 GN=L484_006237 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0044464 cell part
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020277.2.1MELO3C020277.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..29
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..116
e-value: 1.4E-21
score: 79.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availablePANTHERPTHR44833FAMILY NOT NAMEDcoord: 41..123
IPR002048EF-hand domainSMARTSM00054efh_1coord: 50..78
e-value: 0.0012
score: 28.1
coord: 84..112
e-value: 4.9E-5
score: 32.7
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 51..109
e-value: 4.7E-12
score: 46.1
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 83..115
score: 13.202
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 46..81
score: 15.127
IPR002048EF-hand domainCDDcd00051EFhcoord: 50..110
e-value: 1.72693E-15
score: 65.6469
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 93..105
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 59..71
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 47..111