Carg24222 (gene) Silver-seed gourd

NameCarg24222
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionpolcalcin Bra n 2-like
LocationCucurbita_argyrosperma_scaffold_191 : 39734 .. 39985 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAGTGACATAAGCGCAGCCGAGTGCGAGAGGATCTTCAAGCGATTCGACGCGAACGGCGACGGGATGATATCGGCGGCGGAGCTGGTCGATGCGTTGAACGGATTGGGAGTGAACGCGGAGGAGGCGAAGAGGATGATGGACGCGATTGACAAAGACGGCGATGGGTTCATATCGTTGGAAGAGTTCGCGGATTTCGCGAAGGATAATCGCGCGTTGATGAAAGATTTTGCGAAGGCGTTTTAA

mRNA sequence

ATGGCGGAGAGTGACATAAGCGCAGCCGAGTGCGAGAGGATCTTCAAGCGATTCGACGCGAACGGCGACGGGATGATATCGGCGGCGGAGCTGGTCGATGCGTTGAACGGATTGGGAGTGAACGCGGAGGAGGCGAAGAGGATGATGGACGCGATTGACAAAGACGGCGATGGGTTCATATCGTTGGAAGAGTTCGCGGATTTCGCGAAGGATAATCGCGCGTTGATGAAAGATTTTGCGAAGGCGTTTTAA

Coding sequence (CDS)

ATGGCGGAGAGTGACATAAGCGCAGCCGAGTGCGAGAGGATCTTCAAGCGATTCGACGCGAACGGCGACGGGATGATATCGGCGGCGGAGCTGGTCGATGCGTTGAACGGATTGGGAGTGAACGCGGAGGAGGCGAAGAGGATGATGGACGCGATTGACAAAGACGGCGATGGGTTCATATCGTTGGAAGAGTTCGCGGATTTCGCGAAGGATAATCGCGCGTTGATGAAAGATTTTGCGAAGGCGTTTTAA

Protein sequence

MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
BLAST of Carg24222 vs. NCBI nr
Match: XP_022935297.1 (probable calcium-binding protein CML28 [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 6.2e-18
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
          MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXFAKDNRALMKDFAKAF 84
          XXXXXXXFAKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXFAKDNRALMKDFAKAF 83

BLAST of Carg24222 vs. NCBI nr
Match: XP_023526616.1 (probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 99.0 bits (245), Expect = 8.1e-18
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
          MAESD+SAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MAESDVSAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXFAKDNRALMKDFAKAF 84
          XXXXXXXFAKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXFAKDNRALMKDFAKAF 83

BLAST of Carg24222 vs. NCBI nr
Match: XP_022982739.1 (polcalcin Syr v 3-like [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-16
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 0

Query: 1   MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
           MAESDISAAECERIFKRFDANGDGMISAAEL DALNGLGXXXXXXXXXXXXXXXXXXXXX
Sbjct: 30  MAESDISAAECERIFKRFDANGDGMISAAELGDALNGLGXXXXXXXXXXXXXXXXXXXXX 89

Query: 61  XXXXXXXFAKDNRALMKDFAKAF 84
           XXXXXXXF K+NRALMKDFAKAF
Sbjct: 90  XXXXXXXFTKENRALMKDFAKAF 112

BLAST of Carg24222 vs. NCBI nr
Match: XP_022948513.1 (probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 probable calcium-binding protein CML28 [Cucurbita maxima] >XP_023523664.1 probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
          MA++ + +AECERIFKRFDANGDG ISA EL DALNG+ XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXFAKDNRALMKDFAKAF 84
          XXXX   FAKDNRALMKDFAKAF
Sbjct: 61 XXXXFFEFAKDNRALMKDFAKAF 83

BLAST of Carg24222 vs. NCBI nr
Match: XP_016902062.1 (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
          MA+S +++A+CERIFKRFDANGDG ISA EL DALNG  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXFAKDNRALMKDFAKAF 84
          XXXXXXX AKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of Carg24222 vs. TAIR10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-08
Identity = 35/76 (46.05%), Postives = 37/76 (48.68%), Query Frame = 0

Query: 9  AECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
          AE +RIFK+FDANGDG ISAAEL DAL  LG                             
Sbjct: 8  AEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYISYQEFID 67

Query: 69 FAKDNRALMKDFAKAF 84
          FA  NR LMKD AK F
Sbjct: 68 FASANRGLMKDVAKIF 83

BLAST of Carg24222 vs. TAIR10
Match: AT5G17480.1 (pollen calcium-binding protein 1)

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-07
Identity = 34/76 (44.74%), Postives = 37/76 (48.68%), Query Frame = 0

Query: 9  AECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
          AE +RIFK+FDANGDG ISAAEL +AL  LG                             
Sbjct: 8  AEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNISYQEFTD 67

Query: 69 FAKDNRALMKDFAKAF 84
          FA  NR LMKD AK F
Sbjct: 68 FAGANRGLMKDVAKIF 83

BLAST of Carg24222 vs. Swiss-Prot
Match: sp|Q9SRP7|CML28_ARATH (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 35/76 (46.05%), Postives = 37/76 (48.68%), Query Frame = 0

Query: 9  AECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
          AE +RIFK+FDANGDG ISAAEL DAL  LG                             
Sbjct: 8  AEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYISYQEFID 67

Query: 69 FAKDNRALMKDFAKAF 84
          FA  NR LMKD AK F
Sbjct: 68 FASANRGLMKDVAKIF 83

BLAST of Carg24222 vs. Swiss-Prot
Match: sp|P69199|POLC2_BRACM (Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-06
Identity = 49/76 (64.47%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 9  AECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
          AE +RIFK+FDANGDG ISA+EL DAL  LG            XXXXXXXXXXXXXXX  
Sbjct: 8  AEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAXXXXXXXXXXXXXXXSD 67

Query: 69 FAKDNRALMKDFAKAF 84
          FA  NR LMKD AK F
Sbjct: 68 FASANRGLMKDVAKIF 83

BLAST of Carg24222 vs. Swiss-Prot
Match: sp|P69198|POLC2_BRANA (Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-06
Identity = 49/76 (64.47%), Postives = 52/76 (68.42%), Query Frame = 0

Query: 9  AECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
          AE +RIFK+FDANGDG ISA+EL DAL  LG            XXXXXXXXXXXXXXX  
Sbjct: 8  AEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAXXXXXXXXXXXXXXXSD 67

Query: 69 FAKDNRALMKDFAKAF 84
          FA  NR LMKD AK F
Sbjct: 68 FASANRGLMKDVAKIF 83

BLAST of Carg24222 vs. Swiss-Prot
Match: sp|Q39419|POLC4_BETPN (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.9e-06
Identity = 34/76 (44.74%), Postives = 37/76 (48.68%), Query Frame = 0

Query: 9  AECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXXXXXXX 68
          AE ERIFKRFDANGDG ISAAEL +AL  LG                             
Sbjct: 10 AERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFISFQEFTD 69

Query: 69 FAKDNRALMKDFAKAF 84
          F + NR L+KD AK F
Sbjct: 70 FGRANRGLLKDVAKIF 85

BLAST of Carg24222 vs. Swiss-Prot
Match: sp|O81092|ALL3_OLEEU (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-06
Identity = 34/84 (40.48%), Postives = 40/84 (47.62%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXX 60
          MA+     AE ERIFKRFDANGDG IS++EL + L  LG                     
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 XXXXXXXXFAKDNRALMKDFAKAF 84
                  FA+ NR L+KD AK F
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

BLAST of Carg24222 vs. TrEMBL
Match: tr|A0A1S4E1G1|A0A1S4E1G1_CUCME (polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 71/83 (85.54%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
          MA+S +++A+CERIFKRFDANGDG ISA EL DALNG  XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXFAKDNRALMKDFAKAF 84
          XXXXXXX AKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of Carg24222 vs. TrEMBL
Match: tr|A0A0A0L775|A0A0A0L775_CUCSA (Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGXXXXXXXXXXXXXXXXXXXXX 60
          MA+S +++A+ ERIFKRFDANGDG ISA EL DALN   XXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXFAKDNRALMKDFAKAF 84
          XXXXXXX AKDNRALMKDFAKAF
Sbjct: 61 XXXXXXXXAKDNRALMKDFAKAF 83

BLAST of Carg24222 vs. TrEMBL
Match: tr|A0A2I0KIR2|A0A2I0KIR2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_011201 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-05
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXX 60
          MA+     AE ERIFKRFDANGDG IS+AEL DAL  LG       XXXXXXXXXXXXXX
Sbjct: 1  MADDPQEVAERERIFKRFDANGDGKISSAELGDALKTLGSVTAEEVXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXFAKDNRALMKDFAKAF 84
          XXXXXXX FA+ NR LMKD AK F
Sbjct: 61 XXXXXXXDFARANRGLMKDVAKIF 84

BLAST of Carg24222 vs. TrEMBL
Match: tr|W9RDJ1|W9RDJ1_9ROSA (Polcalcin Syr v 3 OS=Morus notabilis OX=981085 GN=L484_006237 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-05
Identity = 28/39 (71.79%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 1  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLG 40
          MAE     A+CERIFKRFDANGDG IS  EL DALN LG
Sbjct: 1  MAELTEERAQCERIFKRFDANGDGKISWTELADALNSLG 39

BLAST of Carg24222 vs. TrEMBL
Match: tr|A0A164UEU9|A0A164UEU9_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025870 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-05
Identity = 52/81 (64.20%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 4  SDISAAECERIFKRFDANGDGMISAAELVDALNGLG-XXXXXXXXXXXXXXXXXXXXXXX 63
          +D  AAE ERIFK+FDANGDG IS+ EL DAL  LG        XXXXXXXXXXXXXXXX
Sbjct: 2  ADPDAAEHERIFKKFDANGDGQISSTELGDALQNLGNVTVDEVKXXXXXXXXXXXXXXXX 61

Query: 64 XXXXXFAKDNRALMKDFAKAF 84
               FAK N+ LMKD AK F
Sbjct: 62 QEFTEFAKANKGLMKDVAKVF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022935297.16.2e-18100.00probable calcium-binding protein CML28 [Cucurbita moschata][more]
XP_023526616.18.1e-1898.80probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo][more]
XP_022982739.13.4e-1696.39polcalcin Syr v 3-like [Cucurbita maxima][more]
XP_022948513.11.3e-1283.13probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 prob... [more]
XP_016902062.11.9e-1185.54PREDICTED: polcalcin Bra n 2-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT3G03430.17.1e-0846.05Calcium-binding EF-hand family protein[more]
AT5G17480.14.6e-0744.74pollen calcium-binding protein 1[more]
Match NameE-valueIdentityDescription
sp|Q9SRP7|CML28_ARATH1.3e-0646.05Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 ... [more]
sp|P69199|POLC2_BRACM2.9e-0664.47Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1[more]
sp|P69198|POLC2_BRANA2.9e-0664.47Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1[more]
sp|Q39419|POLC4_BETPN4.9e-0644.74Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1[more]
sp|O81092|ALL3_OLEEU6.3e-0640.48Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S4E1G1|A0A1S4E1G1_CUCME1.3e-1185.54polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1[more]
tr|A0A0A0L775|A0A0A0L775_CUCSA1.2e-0983.13Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G34536... [more]
tr|A0A2I0KIR2|A0A2I0KIR2_PUNGR2.3e-0570.24Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_011201 PE=4 SV=1[more]
tr|W9RDJ1|W9RDJ1_9ROSA4.0e-0571.79Polcalcin Syr v 3 OS=Morus notabilis OX=981085 GN=L484_006237 PE=4 SV=1[more]
tr|A0A164UEU9|A0A164UEU9_DAUCA4.0e-0564.20Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025870 ... [more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
IPR002048EF_hand_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24222-RACarg24222-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 10..38
e-value: 8.9E-5
score: 31.9
coord: 44..72
e-value: 1.1E-4
score: 31.6
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 11..69
e-value: 4.1E-12
score: 46.3
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 6..41
score: 15.239
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 43..75
score: 12.951
IPR002048EF-hand domainCDDcd00051EFhcoord: 10..70
e-value: 3.43536E-14
score: 60.6393
NoneNo IPR availableGENE3DG3DSA:1.10.238.10coord: 1..78
e-value: 6.4E-21
score: 77.2
NoneNo IPR availablePANTHERPTHR44833FAMILY NOT NAMEDcoord: 2..83
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 19..31
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 53..65
IPR011992EF-hand domain pairSUPERFAMILYSSF47473EF-handcoord: 9..69