CmoCh06G009960 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G009960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	CUGBP Elav-like family member 4
Location	Cmo_Chr06 : 7827399 .. 7828019 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCCTTCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCGAATGGAAACCCGCTCTCGGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCGTAAGCTATCGTATCTATTATTTCTTGTAGTGTTCTGTTCAGTCGAAGGTGTTCTCTAAGAGTTTTTGTAAGGAGGGGTTGATAGAATTAAGGGATTTTAAAAAGATTTGAACTTTTTAACAGATCTATTGATAAAATAGATTTTTAGGGCGAACGAAAAACGAAGCTCTCGTTATTTCGATTTCGTTTCGTTATTGAATCTTCTTCGCTTTTAATTGATATAAACAGAAACTACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAG

mRNA sequence

ATGGACTCCCTTCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCGAATGGAAACCCGCTCTCGGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCTCGAAGGTGTTCTCTAAGAGTTTTTGGCGAACGAAAAACGAAGCTCTCGTTATTTCGATTTCGTTTCGTTATTGAATCTTCTTCGCTTTTAATTGATATAAACAGAAACTACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAG

Coding sequence (CDS)

ATGGACTCCCTTCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCGAATGGAAACCCGCTCTCGGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCTCGAAGGTGTTCTCTAAGAGTTTTTGGCGAACGAAAAACGAAGCTCTCGTTATTTCGATTTCGTTTCGTTATTGAATCTTCTTCGCTTTTAATTGATATAAACAGAAACTACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAG

Homology

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BLAST of CmoCh06G009960 vs. TrEMBL
Match: A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-20
Identity = 47/59 (79.66%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 106 RVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFR 165
           RVYVHYP+GG QLPLFGKVVFVASSIPAI+LGGK+EAKFSI++KT+WCK++E+RK R R
Sbjct: 54  RVYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

[Close]

BLAST of CmoCh06G009960 vs. TrEMBL
Match: B9RD30_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-13
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 69  RVFGERKTKLSLFRFRFVIESSSLLIDINRNYG-SCIERVYVHYPD---GGTQLPLFGKV 128
           RV  E +     F   + +  + +L   N  YG SC+ERVYVH+PD   G  + PLFGKV
Sbjct: 175 RVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDPRSGRKEPPLFGKV 234

Query: 129 VFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 161
           VF A  IP +IL GK EAKF ++ + LWCKR++ +K
Sbjct: 235 VFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

[Close]

BLAST of CmoCh06G009960 vs. TrEMBL
Match: B9MV19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 1


Query: 69  RVFGERKTKLSLFRFRFVIESSSLLIDINRNYGSCIERVYVHYPDGGTQ--LPLFGKVVF 128
           R   E +     F   + +  S +      NYGSC+ERVYVH+P+   Q   PLFGKVVF
Sbjct: 184 RAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPKDQGAPPLFGKVVF 243

Query: 129 VASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 161
            AS IPA+IL GK EAKF +++K LW KR+  +K
Sbjct: 244 TASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

[Close]

BLAST of CmoCh06G009960 vs. TrEMBL
Match: V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-11
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 85  FVIESSSLLIDINRNYGSCIERVYVHYPD--GGTQLPLFGKVVFVASSIPAIILGGKDEA 144
           + +  + ++      +G C+E+VYVH P+    ++ PLFGKVVF AS IPA+IL G  + 
Sbjct: 75  YPLAENQIVTFFTNKFGPCVEKVYVHSPEPTSVSEPPLFGKVVFTASYIPAVILCGAKQT 134

Query: 145 KFSIESKTLWCKRYEARK 161
           KF ++ K LWCK++E +K
Sbjct: 135 KFMVDGKPLWCKKFEPKK 152

[Close]

BLAST of CmoCh06G009960 vs. TrEMBL
Match: A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR 56
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QI NFFT+
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQ 213

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BLAST of CmoCh06G009960 vs. NCBI nr
Match: gi|700201235|gb|KGN56368.1| (hypothetical protein Csa_3G118030 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 5.2e-20
Identity = 47/59 (79.66%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 106 RVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFR 165
           RVYVHYP+GG QLPLFGKVVFVASSIPAI+LGGK+EAKFSI++KT+WCK++E+RK R R
Sbjct: 54  RVYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

[Close]

BLAST of CmoCh06G009960 vs. NCBI nr
Match: gi|255541110|ref|XP_002511619.1| (PREDICTED: uncharacterized protein LOC8265814 [Ricinus communis])

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 44/96 (45.83%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 69  RVFGERKTKLSLFRFRFVIESSSLLIDINRNYG-SCIERVYVHYPD---GGTQLPLFGKV 128
           RV  E +     F   + +  + +L   N  YG SC+ERVYVH+PD   G  + PLFGKV
Sbjct: 175 RVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDPRSGRKEPPLFGKV 234

Query: 129 VFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 161
           VF A  IP +IL GK EAKF ++ + LWCKR++ +K
Sbjct: 235 VFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

[Close]

BLAST of CmoCh06G009960 vs. NCBI nr
Match: gi|566202713|ref|XP_006375225.1| (hypothetical protein POPTR_0014s05440g [Populus trichocarpa])

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 44/94 (46.81%), Postives = 57/94 (60.64%), Query Frame = 1


Query: 69  RVFGERKTKLSLFRFRFVIESSSLLIDINRNYGSCIERVYVHYPDGGTQ--LPLFGKVVF 128
           R   E +     F   + +  S +      NYGSC+ERVYVH+P+   Q   PLFGKVVF
Sbjct: 184 RAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPKDQGAPPLFGKVVF 243

Query: 129 VASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 161
            AS IPA+IL GK EAKF +++K LW KR+  +K
Sbjct: 244 TASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

[Close]

BLAST of CmoCh06G009960 vs. NCBI nr
Match: gi|743935671|ref|XP_011012208.1| (PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 69  RVFGERKTKLSLFRFRFVIESSSLLIDINRNYGSCIERVYVHYPDGGTQ--LPLFGKVVF 128
           R   E +     F   + +  S +      NYGSC+ERVYVH+P+   Q   PLFGKVVF
Sbjct: 185 RAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPKDQGAPPLFGKVVF 244

Query: 129 VASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 161
            AS +PA+IL GK EAKF +++K LW KR++ +K
Sbjct: 245 TASYVPAMILNGKIEAKFWVDAKPLWGKRFKPKK 278

[Close]

BLAST of CmoCh06G009960 vs. NCBI nr
Match: gi|743791790|ref|XP_011042422.1| (PREDICTED: uncharacterized protein LOC105138112 [Populus euphratica])

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1


Query: 69  RVFGERKTKLSLFRFRFVIESSSLLIDINRNYGSCIERVYVHYPDGGTQ--LPLFGKVVF 128
           R   E +     F   + +  S +      NYGSC+ERVYVH+P+   Q   PLFGKVVF
Sbjct: 185 RAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPKDQGAPPLFGKVVF 244

Query: 129 VASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 161
            AS +PA+IL GK EAKF +++K LW KR++ +K
Sbjct: 245 TASYVPAMILNGKIEAKFWVDAKPLWGKRFKPKK 278

The following BLAST results are available for this feature:

BLAST of CmoCh06G009960 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G009960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3N4_CUCSA	3.6e-20	79.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1	[more]
B9RD30_RICCO	1.5e-13	45.83	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1	[more]
B9MV19_POPTR	2.5e-13	46.81	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1	[more]
V4TYD6_9ROSI	3.1e-11	42.31	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1	[more]
A0A067K989_JATCU	4.0e-11	76.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1	[more]

BLAST of CmoCh06G009960 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G009960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201235\|gb\|KGN56368.1\|	5.2e-20	79.66	hypothetical protein Csa_3G118030 [Cucumis sativus]	[more]
gi\|255541110\|ref\|XP_002511619.1\|	2.1e-13	45.83	PREDICTED: uncharacterized protein LOC8265814 [Ricinus communis]	[more]
gi\|566202713\|ref\|XP_006375225.1\|	3.6e-13	46.81	hypothetical protein POPTR_0014s05440g [Populus trichocarpa]	[more]
gi\|743935671\|ref\|XP_011012208.1\|	6.2e-13	45.74	PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica]	[more]
gi\|743791790\|ref\|XP_011042422.1\|	6.2e-13	45.74	PREDICTED: uncharacterized protein LOC105138112 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G009960.1	CmoCh06G009960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33527	FAMILY NOT NAMED	coord: 10..55 score: 3.9E-28coord: 99..160 score: 3.9
None	No IPR available	PANTHER	PTHR33527:SF6	SUBFAMILY NOT NAMED	coord: 10..55 score: 3.9E-28coord: 99..160 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G009960	CmaCh14G021470	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G009960	CmaCh06G009740	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G009960	Cla021102	Watermelon (97103) v1	cmowmB793
CmoCh06G009960	Csa3G118030	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G009960	MELO3C005973	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G009960	ClCG05G000350	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G009960	CSPI03G07390	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G009960	Lsi05G021880	Bottle gourd (USVL1VR-Ls)	cmolsiB758
CmoCh06G009960	Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G009960	Cp4.1LG08g00550	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G009960	MELO3C005973.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G009960	CsaV3_3G007510	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G009960	Cla97C05G080320	Watermelon (97103) v2	cmowmbB833
CmoCh06G009960	Bhi01G000420	Wax gourd	cmowgoB1013
CmoCh06G009960	CsGy3G007510	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G009960	Carg17670	Silver-seed gourd	carcmoB0185
CmoCh06G009960	Carg24162	Silver-seed gourd	carcmoB0137

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G009960	CmoCh14G022150	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G009960	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G009960	Cucurbita maxima (Rimu)	cmacmoB017