Carg17670 (gene) Silver-seed gourd

NameCarg17670
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRho guanine nucleotide exchange factor
LocationCucurbita_argyrosperma_scaffold_119 : 736451 .. 736945 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATAAGGAGGCAGTGGAGGAGGGGACTACCAACGGAGGAGGTGACCTCAACCCAAATGCAAAGGAGTGGAGCCCCATTCACGATTCCGCGCCGGAGGAAGATCGCTGCCTGTTTCTGACCTTCTCCAATGGGTACCCGCTGACTGAGCACCAGATCGTCCACTTCTTCACCCGGTACGCACGCATGCCCTGTTTTTCTCTCTGTCTGTGTGTGTTTGTGTGTTTGTTCTGTGTTATTAAAGAATTGGATGTAAAATATAACTTTTGATGTAGAAAATTCGGAGCGTGCATTGAGAGGGTGTATGTGCACTACCGTGAGGGAGGGAAGGAGCCGCCGTTGTTTGGGAAGGTGGTGTTTGTGGCGTCTTCGATACCAGCCATCATTCTGGAAGGGAAAGATGAAGCCAAGTTTTCTATTGAGAGCAGGACGATGTGGTGTAAGAGGTACGAGGCCAGAAAGGCTCGCTACAGGCTTTGCCGAGGGCGATGA

mRNA sequence

ATGGGTGATAAGGAGGCAGTGGAGGAGGGGACTACCAACGGAGGAGGTGACCTCAACCCAAATGCAAAGGAGTGGAGCCCCATTCACGATTCCGCGCCGGAGGAAGATCGCTGCCTGTTTCTGACCTTCTCCAATGGGTACCCGCTGACTGAGCACCAGATCGTCCACTTCTTCACCCGAAAATTCGGAGCGTGCATTGAGAGGGTGTATGTGCACTACCGTGAGGGAGGGAAGGAGCCGCCGTTGTTTGGGAAGGTGGTGTTTGTGGCGTCTTCGATACCAGCCATCATTCTGGAAGGGAAAGATGAAGCCAAGTTTTCTATTGAGAGCAGGACGATGTGGTGTAAGAGGTACGAGGCCAGAAAGGCTCGCTACAGGCTTTGCCGAGGGCGATGA

Coding sequence (CDS)

ATGGGTGATAAGGAGGCAGTGGAGGAGGGGACTACCAACGGAGGAGGTGACCTCAACCCAAATGCAAAGGAGTGGAGCCCCATTCACGATTCCGCGCCGGAGGAAGATCGCTGCCTGTTTCTGACCTTCTCCAATGGGTACCCGCTGACTGAGCACCAGATCGTCCACTTCTTCACCCGAAAATTCGGAGCGTGCATTGAGAGGGTGTATGTGCACTACCGTGAGGGAGGGAAGGAGCCGCCGTTGTTTGGGAAGGTGGTGTTTGTGGCGTCTTCGATACCAGCCATCATTCTGGAAGGGAAAGATGAAGCCAAGTTTTCTATTGAGAGCAGGACGATGTGGTGTAAGAGGTACGAGGCCAGAAAGGCTCGCTACAGGCTTTGCCGAGGGCGATGA

Protein sequence

MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARKARYRLCRGR
BLAST of Carg17670 vs. NCBI nr
Match: XP_022924654.1 (uncharacterized protein LOC111432088 [Cucurbita moschata])

HSP 1 Score: 276.9 bits (707), Expect = 3.4e-71
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60
           MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR
Sbjct: 1   MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60

Query: 61  KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEA 120
           KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEA
Sbjct: 61  KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEA 120

Query: 121 RKARYRLCRGR 132
           RKARYRLCRGR
Sbjct: 121 RKARYRLCRGR 131

BLAST of Carg17670 vs. NCBI nr
Match: XP_023528303.1 (uncharacterized protein LOC111791264 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 1.3e-70
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0

Query: 1   MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60
           MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR
Sbjct: 1   MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60

Query: 61  KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEA 120
           KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKF IESRTMWCKRYEA
Sbjct: 61  KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEA 120

Query: 121 RKARYRLCRGR 132
           RKARYRLCRGR
Sbjct: 121 RKARYRLCRGR 131

BLAST of Carg17670 vs. NCBI nr
Match: XP_022979539.1 (uncharacterized protein LOC111479214 [Cucurbita maxima])

HSP 1 Score: 273.5 bits (698), Expect = 3.8e-70
Identity = 129/131 (98.47%), Postives = 130/131 (99.24%), Query Frame = 0

Query: 1   MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60
           MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR
Sbjct: 1   MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60

Query: 61  KFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEA 120
           +FGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKF IESRTMWCKRYEA
Sbjct: 61  QFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEA 120

Query: 121 RKARYRLCRGR 132
           RKARYRLCRGR
Sbjct: 121 RKARYRLCRGR 131

BLAST of Carg17670 vs. NCBI nr
Match: XP_023540960.1 (uncharacterized protein LOC111801189 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-47
Identity = 91/115 (79.13%), Postives = 103/115 (89.57%), Query Frame = 0

Query: 13  NGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVH 72
           NG   LNP AKEW+P+ D APEEDRCLFLTFSNG PL+EHQIV+FFTRK+G+CIERVYVH
Sbjct: 8   NGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVH 67

Query: 73  YREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARKARYRL 128
           Y +GG + PLFGKVVFVASSIPAIIL GKDEAKFSIES+T+WCKRYEARK R+R+
Sbjct: 68  YPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFRV 122

BLAST of Carg17670 vs. NCBI nr
Match: XP_022944781.1 (uncharacterized protein LOC111449194 [Cucurbita moschata])

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 90/115 (78.26%), Postives = 102/115 (88.70%), Query Frame = 0

Query: 13  NGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVH 72
           NG   LNP AKEW+P+ D APEEDRCLFLTFSNG PL+EHQIV+FFTR +G+CIERVYVH
Sbjct: 8   NGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRNYGSCIERVYVH 67

Query: 73  YREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARKARYRL 128
           Y +GG + PLFGKVVFVASSIPAIIL GKDEAKFSIES+T+WCKRYEARK R+R+
Sbjct: 68  YPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFRV 122

BLAST of Carg17670 vs. TAIR10
Match: AT5G13620.1 (unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-14
Identity = 34/94 (36.17%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 30  DSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYREGGKEPPLFGKVVFV 89
           + A E+DR +FLTFS GYPL+E ++  +FTR+FG  IE + +   EG ++      V+  
Sbjct: 195 EQAREDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMPGGEGNEQALYAKMVLHS 254

Query: 90  ASSIPAIILEGKDEAKFSIESRTMWCKRYEARKA 124
           A+ IP I+ +G +  K++I  + +W ++Y  R +
Sbjct: 255 AAMIPEIVSDGIERNKYTINGKHVWARKYIPRSS 288

BLAST of Carg17670 vs. TAIR10
Match: AT1G49290.1 (unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 8.3e-11
Identity = 36/93 (38.71%), Postives = 56/93 (60.22%), Query Frame = 0

Query: 35  EDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYREGGKEPPLFGKVV--FVASS 94
           +DR +FLTFS GYP++E ++  +FTR+FG  IE V +   E   E PLF K+V     +S
Sbjct: 240 DDRTVFLTFSKGYPISEAEVRVYFTRRFGEVIEAVEMQEVE-ANEQPLFAKMVMKLQCAS 299

Query: 95  IPAIILEGKDEAKFSIESRTMWCKRYEARKARY 126
           +   I+  +   KF+I+ + +W ++Y  RK  Y
Sbjct: 300 MMDEIVSARFRNKFTIDGKHVWARKY-VRKNPY 330

BLAST of Carg17670 vs. TAIR10
Match: AT1G64870.1 (unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 33/111 (29.73%), Postives = 62/111 (55.86%), Query Frame = 0

Query: 25  WSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGA-CIERVYVHYREGG------ 84
           W+  H  A +++R +FLTFS G+P++  +++H FT  +G  C+E VY+   +GG      
Sbjct: 192 WNANH-VATDKERTVFLTFSRGFPVSHAEVIHLFTEIYGEDCVESVYMP-EDGGNSSNDN 251

Query: 85  ------KEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARK 123
                 ++ PLF K+V  +      IL G+++ K+ I  + +W ++++  K
Sbjct: 252 TNCNGHQQQPLFAKMVLDSVVTVDRILSGQEKQKYKINGKHIWARKFKNNK 300

BLAST of Carg17670 vs. TAIR10
Match: AT3G45200.1 (unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-10
Identity = 30/102 (29.41%), Postives = 56/102 (54.90%), Query Frame = 0

Query: 32  APEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGA-CIERVYVHY----------REGGKEP 91
           A E DR LFLTFS GYP+T  +I+  FT+++G  C+E VY+ +              ++ 
Sbjct: 199 ATENDRTLFLTFSRGYPVTHAEIIELFTKEYGENCVEGVYMQHDNKRSFNANANRSCEQQ 258

Query: 92  PLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARK 123
            LF ++V  + +    +L+ + + +  I  + +W ++Y+ R+
Sbjct: 259 SLFARLVLDSVTTVDRVLDDEQKKELMIYGKNIWARKYDKRE 300

BLAST of Carg17670 vs. TAIR10
Match: AT5G11220.1 (unknown protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.5e-09
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 0

Query: 32  APEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGA-CIERVYV----------HYREGGKEP 91
           A + +R +F+TFS G+P+++ ++  FFT+ +G  C+E VY+          +  + G++ 
Sbjct: 162 ATDNERTMFITFSRGFPVSQAEVKRFFTKNYGENCVEGVYMKEDNKNFLNANGNDNGQQQ 221

Query: 92  PLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRY 119
            LF K+V  + +    IL+G+   +F    + +W ++Y
Sbjct: 222 SLFAKLVLNSVATVDRILDGEKIKRFKSNGKHIWARKY 259

BLAST of Carg17670 vs. TrEMBL
Match: tr|A0A0A0L3N4|A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.1e-41
Identity = 84/112 (75.00%), Postives = 97/112 (86.61%), Query Frame = 0

Query: 15  GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYR 74
           G DLNPNAKEW+PI+D APEEDRCLFLTFSNG+PLTE+QIV FFT        RVYVHY 
Sbjct: 9   GADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFT--------RVYVHYP 68

Query: 75  EGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARKARYR 127
           EGGK+ PLFGKVVFVASSIPAI+L GK+EAKFSI+++TMWCK++E+RKAR R
Sbjct: 69  EGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

BLAST of Carg17670 vs. TrEMBL
Match: tr|V4TYD6|V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-33
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYRE-- 77
           LNP AKEW+P  + APEEDRCLFLTFSNGYPL E+QIV FFT KFG C+E+VYVH  E  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 78  GGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARK 123
              EPPLFGKVVF AS IPA+IL G  + KF ++ + +WCK++E +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

BLAST of Carg17670 vs. TrEMBL
Match: tr|A0A067K989|A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.0e-32
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 0

Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHY---R 77
           LNP AKEW+P  + APEEDRCLFLTFSNGYPLTE+QI +FFT+K+G  +ERVYVH+   +
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 78  EGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARKARYR 127
            G K  PLFGKVVF AS IP +IL G++E KF ++++ +WCKR++  K   R
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRR 282

BLAST of Carg17670 vs. TrEMBL
Match: tr|B9RD30|B9RD30_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 0

Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFG-ACIERVYVHY--- 77
           LNP A+EW+P  +   EEDRCLFLTFSNGYPLTE QI+ FF  K+G +C+ERVYVH+   
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDP 221

Query: 78  REGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARK 123
           R G KEPPLFGKVVF A  IP +IL GK EAKF ++ R +WCKR++ +K
Sbjct: 222 RSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

BLAST of Carg17670 vs. TrEMBL
Match: tr|A0A2K1XQX1|A0A2K1XQX1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G054900v3 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 0

Query: 15  GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYR 74
           G  LNP+AKEW+P+ + A EE+RCLFLTFSNGYPLTE QI  FFT  +G+C+ERVYVH+ 
Sbjct: 168 GSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWP 227

Query: 75  EGGKE--PPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARK 123
           E   +  PPLFGKVVF AS IPA+IL GK EAKF ++++ +W KR+  +K
Sbjct: 228 EPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022924654.13.4e-71100.00uncharacterized protein LOC111432088 [Cucurbita moschata][more]
XP_023528303.11.3e-7099.24uncharacterized protein LOC111791264 [Cucurbita pepo subsp. pepo][more]
XP_022979539.13.8e-7098.47uncharacterized protein LOC111479214 [Cucurbita maxima][more]
XP_023540960.12.6e-4779.13uncharacterized protein LOC111801189 [Cucurbita pepo subsp. pepo][more]
XP_022944781.11.0e-4678.26uncharacterized protein LOC111449194 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT5G13620.16.1e-1436.17unknown protein[more]
AT1G49290.18.3e-1138.71unknown protein[more]
AT1G64870.11.1e-1029.73unknown protein[more]
AT3G45200.14.1e-1029.41unknown protein[more]
AT5G11220.13.5e-0927.55unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L3N4|A0A0A0L3N4_CUCSA7.1e-4175.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118030 PE=4 SV=1[more]
tr|V4TYD6|V4TYD6_9ROSI5.5e-3363.55Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024012mg PE=4 ... [more]
tr|A0A067K989|A0A067K989_JATCU6.0e-3259.82Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14611 PE=4 SV=1[more]
tr|B9RD30|B9RD30_RICCO1.0e-3162.39Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1609130 PE=4 SV=1[more]
tr|A0A2K1XQX1|A0A2K1XQX1_POPTR1.0e-3160.91Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G054900v3 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17670-RACarg17670-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availablePANTHERPTHR33527:SF8SUBFAMILY NOT NAMEDcoord: 15..123
NoneNo IPR availablePANTHERPTHR33527FAMILY NOT NAMEDcoord: 15..123