Cla021102 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021102
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 460917 .. 461507 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACTGTTGAGGGCTTTAATGGTGCTGATTTGAACCCTAATGCAAAAGAATGGAACCCTGTTTACGATTGCGCTCCGGAGGAAGATCGATGCCTCTTTCTCACCTTCTCGAATGGTTTCCCCCTTAACGAGCACCAAATCGTCACCTTCTTCACCCGGTACGCCCACCTTTGTTCCCAATTTTCTTTCTTTCATTCAACAGTAAAAAAACGAAGACATGAATTCAAAGTTGATAATACAAGTTGAAAACAAGATAGTATAATTTCAACACAGATCTAAGTTATATATATATGTTTATGCATGCATCATATGTGTAATAGATGTTGTTATAGATCTTTCTTCACTTTTAACTGATGTAGAAAATACGGAGCGTGCATCGAAAGGGTGTACGTGCATTATCCGGACGGAGGGAAACAACCGCCATTGTTTGGAAAGGTGGTGTTTGTTGCATCTTCAATTCCAGCAGTCATTCTGGAAGGGAAAGAAGAAGCTAAGTTTTTTATTGATAGCAAGACGATGTGGTGTAAGAAATTTGAGGCTCGAAAAGCTCGGACTAGGGCTTCGGCCCCAGCGTCTCAACGACGGTGA

mRNA sequence

ATGGGCACTGTTGAGGGCTTTAATGGTGCTGATTTGAACCCTAATGCAAAAGAATGGAACCCTGTTTACGATTGCGCTCCGGAGGAAGATCGATGCCTCTTTCTCACCTTCTCGAATGGTTTCCCCCTTAACGAGCACCAAATCGTCACCTTCTTCACCCGAAAATACGGAGCGTGCATCGAAAGGGTGTACGTGCATTATCCGGACGGAGGGAAACAACCGCCATTGTTTGGAAAGGTGGTGTTTGTTGCATCTTCAATTCCAGCAGTCATTCTGGAAGGGAAAGAAGAAGCTAAGTTTTTTATTGATAGCAAGACGATGTGGTGTAAGAAATTTGAGGCTCGAAAAGCTCGGACTAGGGCTTCGGCCCCAGCGTCTCAACGACGGTGA

Coding sequence (CDS)

ATGGGCACTGTTGAGGGCTTTAATGGTGCTGATTTGAACCCTAATGCAAAAGAATGGAACCCTGTTTACGATTGCGCTCCGGAGGAAGATCGATGCCTCTTTCTCACCTTCTCGAATGGTTTCCCCCTTAACGAGCACCAAATCGTCACCTTCTTCACCCGAAAATACGGAGCGTGCATCGAAAGGGTGTACGTGCATTATCCGGACGGAGGGAAACAACCGCCATTGTTTGGAAAGGTGGTGTTTGTTGCATCTTCAATTCCAGCAGTCATTCTGGAAGGGAAAGAAGAAGCTAAGTTTTTTATTGATAGCAAGACGATGTGGTGTAAGAAATTTGAGGCTCGAAAAGCTCGGACTAGGGCTTCGGCCCCAGCGTCTCAACGACGGTGA

Protein sequence

MGTVEGFNGADLNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYPDGGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARKARTRASAPASQRR

Homology

[Close]

BLAST of Cla021102 vs. TrEMBL
Match: A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-55
Identity = 107/129 (82.95%), Postives = 116/129 (89.92%), Query Frame = 1


Query: 1   MGTVEGFNGADLNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACI 60
           MGTVE FNGADLNPNAKEWNP+YDCAPEEDRCLFLTFSNGFPL E+QIVTFFTR      
Sbjct: 1   MGTVEVFNGADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR------ 60

Query: 61  ERVYVHYPDGGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARKARTR 120
             VYVHYP+GGKQ PLFGKVVFVASSIPA++L GKEEAKF ID+KTMWCKKFE+RKAR+R
Sbjct: 61  --VYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 120

Query: 121 ASAPASQRR 130
           ASAPAS+RR
Sbjct: 121 ASAPASRRR 121

[Close]

BLAST of Cla021102 vs. TrEMBL
Match: V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 6.9e-35
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 12  LNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYPD-- 71
           LNP AKEWNP  + APEEDRCLFLTFSNG+PL E+QIVTFFT K+G C+E+VYVH P+  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 72  GGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARK 117
              +PPLFGKVVF AS IPAVIL G ++ KF +D K +WCKKFE +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

[Close]

BLAST of Cla021102 vs. TrEMBL
Match: A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.9e-34
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 12  LNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYP--- 71
           LNP AKEWNP  + APEEDRCLFLTFSNG+PL E+QI  FFT+KYG  +ERVYVH+P   
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 72  DGGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARKARTRAS 123
           +G K  PLFGKVVF AS IP +IL G+ E KF++D+K +WCK+F+  K   R S
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRRNS 284

[Close]

BLAST of Cla021102 vs. TrEMBL
Match: B9MV19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.9e-34
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 9   GADLNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYP 68
           G+ LNP+AKEWNPV + A EE+RCLFLTFSNG+PL E QI  FFT  YG+C+ERVYVH+P
Sbjct: 168 GSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWP 227

Query: 69  DGGKQ--PPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARK 117
           +   Q  PPLFGKVVF AS IPA+IL GK EAKF++D+K +W K+F  +K
Sbjct: 228 EPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

[Close]

BLAST of Cla021102 vs. TrEMBL
Match: B9RD30_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.0e-33
Identity = 69/109 (63.30%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 12  LNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYG-ACIERVYVHYPD- 71
           LNP A+EWNP  +   EEDRCLFLTFSNG+PL E QI+ FF  KYG +C+ERVYVH+PD 
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDP 221

Query: 72  --GGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARK 117
             G K+PPLFGKVVF A  IP VIL GK+EAKF++D + +WCK+F+ +K
Sbjct: 222 RSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

[Close]

BLAST of Cla021102 vs. NCBI nr
Match: gi|700201235|gb|KGN56368.1| (hypothetical protein Csa_3G118030 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 3.9e-55
Identity = 107/129 (82.95%), Postives = 116/129 (89.92%), Query Frame = 1


Query: 1   MGTVEGFNGADLNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACI 60
           MGTVE FNGADLNPNAKEWNP+YDCAPEEDRCLFLTFSNGFPL E+QIVTFFTR      
Sbjct: 1   MGTVEVFNGADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR------ 60

Query: 61  ERVYVHYPDGGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARKARTR 120
             VYVHYP+GGKQ PLFGKVVFVASSIPA++L GKEEAKF ID+KTMWCKKFE+RKAR+R
Sbjct: 61  --VYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 120

Query: 121 ASAPASQRR 130
           ASAPAS+RR
Sbjct: 121 ASAPASRRR 121

[Close]

BLAST of Cla021102 vs. NCBI nr
Match: gi|567905778|ref|XP_006445377.1| (hypothetical protein CICLE_v10024012mg [Citrus clementina])

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-34
Identity = 72/107 (67.29%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 12  LNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYPD-- 71
           LNP AKEWNP  + APEEDRCLFLTFSNG+PL E+QIVTFFT K+G C+E+VYVH P+  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 72  GGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARK 117
              +PPLFGKVVF AS IPAVIL G ++ KF +D K +WCKKFE +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

[Close]

BLAST of Cla021102 vs. NCBI nr
Match: gi|802700956|ref|XP_012083856.1| (PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas])

HSP 1 Score: 151.8 bits (382), Expect = 8.4e-34
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 12  LNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYP--- 71
           LNP AKEWNP  + APEEDRCLFLTFSNG+PL E+QI  FFT+KYG  +ERVYVH+P   
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 72  DGGKQPPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARKARTRAS 123
           +G K  PLFGKVVF AS IP +IL G+ E KF++D+K +WCK+F+  K   R S
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRRNS 284

[Close]

BLAST of Cla021102 vs. NCBI nr
Match: gi|566202713|ref|XP_006375225.1| (hypothetical protein POPTR_0014s05440g [Populus trichocarpa])

HSP 1 Score: 151.8 bits (382), Expect = 8.4e-34
Identity = 71/110 (64.55%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 9   GADLNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYP 68
           G+ LNP+AKEWNPV + A EE+RCLFLTFSNG+PL E QI  FFT  YG+C+ERVYVH+P
Sbjct: 168 GSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWP 227

Query: 69  DGGKQ--PPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARK 117
           +   Q  PPLFGKVVF AS IPA+IL GK EAKF++D+K +W K+F  +K
Sbjct: 228 EPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

[Close]

BLAST of Cla021102 vs. NCBI nr
Match: gi|743935671|ref|XP_011012208.1| (PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica])

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-33
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 1


Query: 9   GADLNPNAKEWNPVYDCAPEEDRCLFLTFSNGFPLNEHQIVTFFTRKYGACIERVYVHYP 68
           G+ LNP+AKEWNPV + A EE+RCLFLTFSNG+PL E QI  FFT  YG+C+ERVYVH+P
Sbjct: 169 GSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWP 228

Query: 69  DGGKQ--PPLFGKVVFVASSIPAVILEGKEEAKFFIDSKTMWCKKFEARK 117
           +   Q  PPLFGKVVF AS +PA+IL GK EAKF++D+K +W K+F+ +K
Sbjct: 229 EPKDQGAPPLFGKVVFTASYVPAMILNGKIEAKFWVDAKPLWGKRFKPKK 278

The following BLAST results are available for this feature:

BLAST of Cla021102 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3N4_CUCSA	2.7e-55	82.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1	[more]
V4TYD6_9ROSI	6.9e-35	67.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1	[more]
A0A067K989_JATCU	5.9e-34	62.28	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1	[more]
B9MV19_POPTR	5.9e-34	64.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1	[more]
B9RD30_RICCO	5.0e-33	63.30	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1	[more]

BLAST of Cla021102 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201235\|gb\|KGN56368.1\|	3.9e-55	82.95	hypothetical protein Csa_3G118030 [Cucumis sativus]	[more]
gi\|567905778\|ref\|XP_006445377.1\|	1.0e-34	67.29	hypothetical protein CICLE_v10024012mg [Citrus clementina]	[more]
gi\|802700956\|ref\|XP_012083856.1\|	8.4e-34	62.28	PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas]	[more]
gi\|566202713\|ref\|XP_006375225.1\|	8.4e-34	64.55	hypothetical protein POPTR_0014s05440g [Populus trichocarpa]	[more]
gi\|743935671\|ref\|XP_011012208.1\|	1.4e-33	63.64	PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021102	Cla021102.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33527	FAMILY NOT NAMED	coord: 9..117 score: 2.8
None	No IPR available	PANTHER	PTHR33527:SF6	SUBFAMILY NOT NAMED	coord: 9..117 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021102	Cla97C05G080320	Watermelon (97103) v2	wmwmbB206
Cla021102	Csa3G118030	Cucumber (Chinese Long) v2	cuwmB233
Cla021102	MELO3C005973	Melon (DHL92) v3.5.1	mewmB461
Cla021102	ClCG05G000350	Watermelon (Charleston Gray)	wcgwmB286
Cla021102	CSPI03G07390	Wild cucumber (PI 183967)	cpiwmB231
Cla021102	CmaCh14G021470	Cucurbita maxima (Rimu)	cmawmB242
Cla021102	CmaCh06G009740	Cucurbita maxima (Rimu)	cmawmB799
Cla021102	CmoCh14G022150	Cucurbita moschata (Rifu)	cmowmB231
Cla021102	CmoCh06G009960	Cucurbita moschata (Rifu)	cmowmB793
Cla021102	Lsi05G021880	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021102	Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	cpewmB613
Cla021102	Cp4.1LG08g00550	Cucurbita pepo (Zucchini)	cpewmB845
Cla021102	CsGy3G007510	Cucumber (Gy14) v2	cgybwmB217
Cla021102	MELO3C005973.2	Melon (DHL92) v3.6.1	medwmB447
Cla021102	Carg24162	Silver-seed gourd	carwmB0094
Cla021102	Carg17670	Silver-seed gourd	carwmB0130
Cla021102	CsaV3_3G007510	Cucumber (Chinese Long) v3	cucwmB239
Cla021102	Bhi01G000420	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021102	Cucumber (Gy14) v1	cgywmB479