Carg24162 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24162
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rho guanine nucleotide exchange factor
Location	Cucurbita_argyrosperma_scaffold_221 : 50682 .. 54232 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCCTTCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCGAATGGAAACCCGCTCTCGGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCGTAAGCTATCGTATCTATTATTTCTTGTAGTGTTCTATTCAGTGGAAGGTGTTCTCTAAGAGTTTTTGTAAGGAGGGGTTGATAGAATTAAGGGATTTTAAAAATATTTGAACTTTTTAACAGATCTATTGATAAAATAGATTTTTAGGGCGAACGAAAAACGAAGCTCTCGTTATTTCGATTTCGTTTCGTTATTGAATCTTCTTCGCTTTTAATTGATATAAACAGAAACTACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAGGGTTTAGAGTTCAGAGCCTCTACGACGAAGAAACTAAGGAGGGGCCGGTTTGAATGTGTTTAGATCCACCTGATCTCGATCAAAAAGTCGAAAGTTTGTTCATGGTTTGAAATGGAAGGGTAATGTCAGTTTCTTTGCTGAAATAAAGAGCAATTAATGAGGGTTTTGTGCTTGTGATCTTCATTTCTTCTATGTTCTTTGATTTTTTTAGGAACTCAAATGAATCAGATCCTCAATTGATGAACATTGCATTTAGAGAAACATCCAACCTAGAAACTAATGAGATTTTCCTTTAACAACAACCAAAATTTAAGGATCCTTCGTGTATAATCTCGATATTCATTACTCGTTCATAGAAAAAGATATATAAATGTATAAGAACGAGTTCAACCATTACCCGCCAAGGATCGAAGAATTGATTTTTATGATTATAATTGATATCTTATCTATTAAATTATGTTCGGGTTTACGCAGTGATGCACTCGTGAAAACCCCAGTCTCGAAATCTACAAAATTTTGACTCCAATCTTTTTACTATAAAAATTAATTATGATTAATTAAAAATATATTTTAAGGTTACTTTGAATACGACAAAAAAGTAATTTTAATATCGATCACAAAGTTAGAGGTTCAAAGTCTTCATTCCATATATGTTGAATCGAAAAACGTGCAAAACAATATATACAATTTACTTACCTTATAAAATGCCAAATTTATACTTCCCTTAGATAATATAATAATAATAATAATAATAATATTTTAATTTAAATATTTTAATTTGTATCAAAATTGAAAAAATAAAATAAAATTCACCTTTGAAGTAACTGGTTAATTAATGGGTTGTTTGGTTGAAAGTTTTGAGGATAAATAATTAATATAATAATTAAATAAAATTTAATTATAAATGTTATATTTCAAAAATAAGTAACTAAATATATAAAAAGACATAATTTAATTAATTATTAATTAAACTTGCATAAATAATTGGAATTAAATAGTATGAAATATATTTTAATAAAAATATACCAAAAATATAAAATTTCATTATTAACGTAATGATTCAAAATCCTCCGAATTTTGTGTCACGTGCTAACACCATGACACCCTTCACAATCTTCTACGAACTCATGCCAAACTCGGTTGCATAACCTGTGTTATCTAACTAACCATCAGAATCAGGTTCTTCTTCAGATTAGGAATATATCTGACATCCTTTAATGTTCACTGATTCCAATCTGGAGTTTGTAAGGAGACATCTCTCTTTTCTTCAATCTCCAAGGTTTTGTCGTCAGCAAGGTTTTGTTATCAGCAAGATATACATTCCCCAAAGTTTCCTGATTTGAAATTTTGAAATGATCCCTAATTTGGAAACGATGCACCTGAATTCAAGATTCAATTGAGTTATCCACACTAAGGATTAGAGCATCCTTAGTATCTTCTGCTGAATGTATAGAATCATCTCATCTTCAGATTTGTGATTTTTTTTTTTTTTTTTTCGCATCAAATACACCTTATTCATAGCCGACGGTTTCTCATAAATATTCGACAACGCCTTCAGCAGATTTGACGTTGTCTTCTCCTTGATGATATTAAACGCCATGTTTTTGGACAACGTCAACCGGATCAACCCTAAGGCTTGATGATTCTTAAGCTTTCACTGCTCCGTGGTCATAGTATCCGGCTTCACCCGTAACAAAGGTTCGTGAAGACCTTTATGGTACCGATAATCTTCAATTTGCATCTTTCAGAAACTGAAATCGGATCCATCAAACTTTCCAATTCCAATCTTTGAAATTTCCATCTTCACAGATTGTGGTGAATCTCGCCCCGCTCTAATACCAGTTGTTAGCTATGATACCAATTGTTAGGATCACTCAACAACGCACACACTCGATCAAGATGAACACAAAGAACATGAGAGAGAAAATATAATGAGGAATGTTCTAAAGGTTTTATCATTGATGACTTCGAGTATGTACAATAAGGTAAAAAACAAAGGATTAAGAAAAGTACATTTGGCTAATGGGATATATATGGTTTCAATTTTCTAGATAGAGCTTCCAAACATTTAAACCTACTAATATAATCTAACAAATATATCTTTATCAAATCTTTACCAAACATCTACCATATATATCTCTATCAGATCTTTACTAAATATCTTCCAAATATATCTCTACCTGTTCTAGGCATTAGGCTCCATATCTGAACAGGTACAACATCTGAATGAGAGTGATCCTCTAGATATGATGACTAAAATAGACTTAAAATAATATTTTCTTGTTGACCTCCTAGGAATTTTCTTTTTGACCTCCGAGGAATTTTCTTTTTGACCTCCGAGGAATTTTCTTTTTGACCTCCGAGGAATTTTCTTAAGATGCATGTAAATAACAACAAAACATGCTGAAATGACTCGTGTTGGTCTATGGGGATAGTCTTCACTCTCGAGAAGCGAGCATGTGAGTGAGGACTAAACATGTTGTAAGGACTCGTGTTGGTCTATGGGGATAATCTTCACTCTTAAGAAGCGAACATGTGAGTGATGATAAAATATGTTGGAAGGACTCATGTTGGTCTGTGGTGATAGTCTTCCCTCTTAAGAAGCGAGGATGTGAGTGAGGACAAAACATGTTGGAAGGACTCGTGTTGGTCTGTGGGGATAATCTTCCCTCTTAAGAAGCGAGGAGTAGGTAACATGACAATGTCGCAGAGGATGCATGGGAAAGTTAGGGCCTTCAAGTGATATGGATTTTGAATCTTGAACATAGGGCGTGACAATTAAGAAGCGAGAAGTAGGTAACATGACCATGTCACAAGGGATGCAAGAGAATGTCGGGATAGTCTACACTCTTAAAAAGCAAGGAGTAGGTAACGTGACCATGTCGCAGGGGATGCAAGGGAATGTCGAGGCCACCAAGTGGTCAATCTAG

mRNA sequence

ATGGACTCCCTTCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCGAATGGAAACCCGCTCTCGGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCAAACTACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAAAACTGAAATCGGATCCATCAAACTTTCCAATTCCAATCTTTGAAATTTCCATCTTCACAGATTGTGGTGAATCTCGCCCCGCTCTAATACCAGTTTCTTCCCTCTTAAGAAGCGAGGATGTGAGTGAGGACAAAACATGTTGGAAGGACTCGTGTTGGTCTGTGGGGATAATCTTCCCTCTTAAGAAGCGAGGAGGCGTGACAATTAAGAAGCGAGAAGTAGGTAACATGACCATGTCACAAGGGATGCAAGAGAATGTCGGGATAGTCTACACTCTTAAAAAGCAAGGAGTAGGTAACGTGACCATGTCGCAGGGGATGCAAGGGAATGTCGAGGCCACCAAGTGGTCAATCTAG

Coding sequence (CDS)

ATGGACTCCCTTCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCGAATGGAAACCCGCTCTCGGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCAAACTACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAAAACTGAAATCGGATCCATCAAACTTTCCAATTCCAATCTTTGAAATTTCCATCTTCACAGATTGTGGTGAATCTCGCCCCGCTCTAATACCAGTTTCTTCCCTCTTAAGAAGCGAGGATGTGAGTGAGGACAAAACATGTTGGAAGGACTCGTGTTGGTCTGTGGGGATAATCTTCCCTCTTAAGAAGCGAGGAGGCGTGACAATTAAGAAGCGAGAAGTAGGTAACATGACCATGTCACAAGGGATGCAAGAGAATGTCGGGATAGTCTACACTCTTAAAAAGCAAGGAGTAGGTAACGTGACCATGTCGCAGGGGATGCAAGGGAATGTCGAGGCCACCAAGTGGTCAATCTAG

Protein sequence

MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFRKLKSDPSNFPIPIFEISIFTDCGESRPALIPVSSLLRSEDVSEDKTCWKDSCWSVGIIFPLKKRGGVTIKKREVGNMTMSQGMQENVGIVYTLKKQGVGNVTMSQGMQGNVEATKWSI

Homology

[Close]

BLAST of Carg24162 vs. NCBI nr
Match: XP_022944781.1 (uncharacterized protein LOC111449194 [Cucurbita moschata])

HSP 1 Score: 254.2 bits (648), Expect = 4.5e-64
Identity = 121/129 (93.80%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSN 60
           MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR     
Sbjct: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR----- 60

Query: 61  LLSNYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR 120
              NYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR
Sbjct: 61  ---NYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR 120

Query: 121 YEARKTRFR 130
           YEARKTRFR
Sbjct: 121 YEARKTRFR 121

[Close]

BLAST of Carg24162 vs. NCBI nr
Match: XP_023540960.1 (uncharacterized protein LOC111801189 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 2.2e-63
Identity = 120/129 (93.02%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSN 60
           MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR     
Sbjct: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR----- 60

Query: 61  LLSNYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR 120
               YGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR
Sbjct: 61  ---KYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR 120

Query: 121 YEARKTRFR 130
           YEARKTRFR
Sbjct: 121 YEARKTRFR 121

[Close]

BLAST of Carg24162 vs. NCBI nr
Match: XP_022924654.1 (uncharacterized protein LOC111432088 [Cucurbita moschata])

HSP 1 Score: 190.3 bits (482), Expect = 8.0e-45
Identity = 90/122 (73.77%), Postives = 101/122 (82.79%), Query Frame = 0


Query: 8   NGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGS 67
           NG   LNP AKEW+P+ D APEEDRCLFLTFSNG PL+EHQIV+FFTR         +G+
Sbjct: 13  NGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR--------KFGA 72

Query: 68  CIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTR 127
           CIERVYVHY +GG + PLFGKVVFVASSIPAIIL GKDEAKFSIES+T+WCKRYEARK R
Sbjct: 73  CIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFSIESRTMWCKRYEARKAR 126

Query: 128 FR 130
           +R
Sbjct: 133 YR 126

[Close]

BLAST of Carg24162 vs. NCBI nr
Match: XP_022979539.1 (uncharacterized protein LOC111479214 [Cucurbita maxima])

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 8   NGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGS 67
           NG   LNP AKEW+P+ D APEEDRCLFLTFSNG PL+EHQIV+FFTR         +G+
Sbjct: 13  NGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR--------QFGA 72

Query: 68  CIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTR 127
           CIERVYVHY +GG + PLFGKVVFVASSIPAIIL GKDEAKF IES+T+WCKRYEARK R
Sbjct: 73  CIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKAR 126

Query: 128 FR 130
           +R
Sbjct: 133 YR 126

[Close]

BLAST of Carg24162 vs. NCBI nr
Match: XP_023528303.1 (uncharacterized protein LOC111791264 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 89/122 (72.95%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 8   NGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGS 67
           NG   LNP AKEW+P+ D APEEDRCLFLTFSNG PL+EHQIV+FFTR         +G+
Sbjct: 13  NGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR--------KFGA 72

Query: 68  CIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTR 127
           CIERVYVHY +GG + PLFGKVVFVASSIPAIIL GKDEAKF IES+T+WCKRYEARK R
Sbjct: 73  CIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKAR 126

Query: 128 FR 130
           +R
Sbjct: 133 YR 126

[Close]

BLAST of Carg24162 vs. TAIR10
Match: AT5G13620.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.5e-10
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 27  APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGSCIERVYVHYPDGGTQLPLF 86
           A E+DR +FLTFS G PLSE ++  +FTR         +G  IE + +   +G  Q    
Sbjct: 197 AREDDRTVFLTFSRGYPLSEAEVHAYFTR--------RFGEIIEAIIMPGGEGNEQALYA 256

Query: 87  GKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKT 127
             V+  A+ IP I+  G +  K++I  K +W ++Y  R +
Sbjct: 257 KMVLHSAAMIPEIVSDGIERNKYTINGKHVWARKYIPRSS 288

[Close]

BLAST of Carg24162 vs. TAIR10
Match: AT1G64870.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-08
Identity = 35/112 (31.25%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 27  APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYG-SCIERVYVHYPDGGT---- 86
           A +++R +FLTFS G P+S  ++++ FT          YG  C+E VY+   DGG     
Sbjct: 198 ATDKERTVFLTFSRGFPVSHAEVIHLFTEI--------YGEDCVESVYMP-EDGGNSSND 257

Query: 87  --------QLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 126
                   Q PLF K+V  +      IL G+++ K+ I  K +W ++++  K
Sbjct: 258 NTNCNGHQQQPLFAKMVLDSVVTVDRILSGQEKQKYKINGKHIWARKFKNNK 300

[Close]

BLAST of Carg24162 vs. TAIR10
Match: AT5G11220.1 (unknown protein)

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-08
Identity = 33/106 (31.13%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 27  APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYG-SCIERVYV----------H 86
           A + +R +F+TFS G P+S+ ++  FFT+        NYG +C+E VY+          +
Sbjct: 162 ATDNERTMFITFSRGFPVSQAEVKRFFTK--------NYGENCVEGVYMKEDNKNFLNAN 221

Query: 87  YPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRY 122
             D G Q  LF K+V  + +    IL G+   +F    K +W ++Y
Sbjct: 222 GNDNGQQQSLFAKLVLNSVATVDRILDGEKIKRFKSNGKHIWARKY 259

[Close]

BLAST of Carg24162 vs. TAIR10
Match: AT1G49290.1 (unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-07
Identity = 32/94 (34.04%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 30  EDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGSCIERVYVHYPDGGTQLPLFGKV 89
           +DR +FLTFS G P+SE ++  +FTR         +G  IE V +   +   Q PLF K+
Sbjct: 240 DDRTVFLTFSKGYPISEAEVRVYFTR--------RFGEVIEAVEMQEVEANEQ-PLFAKM 299

Query: 90  V--FVASSIPAIILGGKDEAKFSIESKTLWCKRY 122
           V     +S+   I+  +   KF+I+ K +W ++Y
Sbjct: 300 VMKLQCASMMDEIVSARFRNKFTIDGKHVWARKY 324

[Close]

BLAST of Carg24162 vs. TAIR10
Match: AT3G45200.1 (unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 2.8e-07
Identity = 34/118 (28.81%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 20  WNPLFDC-APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYG-SCIERVYVHYP 79
           WN   +C A E DR LFLTFS G P++  +I+  FT+         YG +C+E VY+ + 
Sbjct: 193 WNA--NCIATENDRTLFLTFSRGYPVTHAEIIELFTK--------EYGENCVEGVYMQHD 252

Query: 80  DGGT----------QLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 126
           +  +          Q  LF ++V  + +    +L  + + +  I  K +W ++Y+ R+
Sbjct: 253 NKRSFNANANRSCEQQSLFARLVLDSVTTVDRVLDDEQKKELMIYGKNIWARKYDKRE 300

[Close]

BLAST of Carg24162 vs. TrEMBL
Match: tr|A0A0A0L3N4|A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.8e-43
Identity = 88/129 (68.22%), Postives = 104/129 (80.62%), Query Frame = 0


Query: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSN 60
           M +++ FNGAD LNP AKEWNP++DCAPEEDRCLFLTFSNG PL+E+QIV FFT      
Sbjct: 1   MGTVEVFNGAD-LNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFT------ 60

Query: 61  LLSNYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKR 120
                     RVYVHYP+GG QLPLFGKVVFVASSIPAI+LGGK+EAKFSI++KT+WCK+
Sbjct: 61  ----------RVYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKK 112

Query: 121 YEARKTRFR 130
           +E+RK R R
Sbjct: 121 FESRKARSR 112

[Close]

BLAST of Carg24162 vs. TrEMBL
Match: tr|A0A067K989|A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.3e-30
Identity = 69/120 (57.50%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGSCIERV 72
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QI NFFT+         YG  +ERV
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQ--------KYGPFVERV 230

Query: 73  YVHYP---DGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFR 130
           YVH+P   +G    PLFGKVVF AS IP +IL G++E KF +++K LWCKR++  K   R
Sbjct: 231 YVHWPNPKNGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRR 282

[Close]

BLAST of Carg24162 vs. TrEMBL
Match: tr|A0A2K1XQX1|A0A2K1XQX1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G054900v3 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.2e-30
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 0


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGSCIERV 72
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT         NYGSC+ERV
Sbjct: 171 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFT--------MNYGSCVERV 230

Query: 73  YVHYPDGGTQ--LPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFRK 131
           YVH+P+   Q   PLFGKVVF AS IPA+IL GK EAKF +++K LW KR+  +K   +K
Sbjct: 231 YVHWPEPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKKRSGKK 282

[Close]

BLAST of Carg24162 vs. TrEMBL
Match: tr|V4TYD6|V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 66/115 (57.39%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYGSCIERV 72
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QIV FFT        + +G C+E+V
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFT--------NKFGPCVEKV 105

Query: 73  YVHYPD--GGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 126
           YVH P+    ++ PLFGKVVF AS IPA+IL G  + KF ++ K LWCK++E +K
Sbjct: 106 YVHSPEPTSVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

[Close]

BLAST of Carg24162 vs. TrEMBL
Match: tr|B9RD30|B9RD30_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 66/117 (56.41%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALSNLLSNYG-SCIER 72
           LNP A+EWNP  +   EEDRCLFLTFSNG PL+E QI+ FF           YG SC+ER
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFN--------EKYGPSCVER 221

Query: 73  VYVHYPD---GGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARK 126
           VYVH+PD   G  + PLFGKVVF A  IP +IL GK EAKF ++ + LWCKR++ +K
Sbjct: 222 VYVHWPDPRSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

The following BLAST results are available for this feature:

BLAST of Carg24162 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944781.1	4.5e-64	93.80	uncharacterized protein LOC111449194 [Cucurbita moschata]	[more]
XP_023540960.1	2.2e-63	93.02	uncharacterized protein LOC111801189 [Cucurbita pepo subsp. pepo]	[more]
XP_022924654.1	8.0e-45	73.77	uncharacterized protein LOC111432088 [Cucurbita moschata]	[more]
XP_022979539.1	3.0e-44	72.95	uncharacterized protein LOC111479214 [Cucurbita maxima]	[more]
XP_023528303.1	3.0e-44	72.95	uncharacterized protein LOC111791264 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg24162 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13620.1	4.5e-10	34.00	unknown protein	[more]
AT1G64870.1	1.9e-08	31.25	unknown protein	[more]
AT5G11220.1	4.3e-08	31.13	unknown protein	[more]
AT1G49290.1	1.6e-07	34.04	unknown protein	[more]
AT3G45200.1	2.8e-07	28.81	unknown protein	[more]

BLAST of Carg24162 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24162 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3N4\|A0A0A0L3N4_CUCSA	3.8e-43	68.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118030 PE=4 SV=1	[more]
tr\|A0A067K989\|A0A067K989_JATCU	6.3e-30	57.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14611 PE=4 SV=1	[more]
tr\|A0A2K1XQX1\|A0A2K1XQX1_POPTR	8.2e-30	59.17	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G054900v3 PE=...	[more]
tr\|V4TYD6\|V4TYD6_9ROSI	2.4e-29	57.39	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024012mg PE=4 ...	[more]
tr\|B9RD30\|B9RD30_RICCO	1.7e-27	56.41	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1609130 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24162-RA	Carg24162-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33527:SF8	SUBFAMILY NOT NAMED	coord: 12..126
None	No IPR available	PANTHER	PTHR33527	FAMILY NOT NAMED	coord: 12..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24162	Cla021102	Watermelon (97103) v1	carwmB0094
Carg24162	Csa3G118030	Cucumber (Chinese Long) v2	carcuB0105
Carg24162	MELO3C005973	Melon (DHL92) v3.5.1	carmeB0099
Carg24162	ClCG05G000350	Watermelon (Charleston Gray)	carwcgB0096
Carg24162	CSPI03G07390	Wild cucumber (PI 183967)	carcpiB0110
Carg24162	CmaCh14G021470	Cucurbita maxima (Rimu)	carcmaB0127
Carg24162	CmaCh06G009740	Cucurbita maxima (Rimu)	carcmaB0128
Carg24162	CmoCh14G022150	Cucurbita moschata (Rifu)	carcmoB0136
Carg24162	CmoCh06G009960	Cucurbita moschata (Rifu)	carcmoB0137
Carg24162	Lsi05G021880	Bottle gourd (USVL1VR-Ls)	carlsiB088
Carg24162	Cp4.1LG08g00550	Cucurbita pepo (Zucchini)	carcpeB0145
Carg24162	Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	carcpeB0144
Carg24162	CsGy3G007510	Cucumber (Gy14) v2	carcgybB0105
Carg24162	MELO3C005973.2	Melon (DHL92) v3.6.1	carmedB0101
Carg24162	CsaV3_3G007510	Cucumber (Chinese Long) v3	carcucB0114
Carg24162	Cla97C05G080320	Watermelon (97103) v2	carwmbB0098
Carg24162	Bhi01G000420	Wax gourd	carwgoB0111

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24162	Carg17670	Silver-seed gourd	carcarB109

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24162	Cucumber (Gy14) v1	carcgyB0117