Cp4.1LG03g15680 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g15680
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CUGBP Elav-like family member 4
Location	Cp4.1LG03 : 13616319 .. 13617069 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGTCCACAGACAGAGCGCAGCCACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGCAGAGATGGGTGATAAGGAGGCAGTGGAGGAGGGGACTACCAACGGAGGAGGTGACCTGAACCCAAATGCAAAGGAGTGGAGCCCCATTCACGATTCCGCGCCGGAGGAAGATCGCTGCCTGTTTCTGACCTTCTCCAATGGGTACCCGCTGACTGAGCACCAGATCGTCCACTTCTTCACCCGGTACGCACGCACGCACGCATGCCCTGTTTTTCTCTCTGTCTGTGTGTGTGTGTTTGTTCTGTGTTATTAATAAGGAATTGGATGTGTCATATAATTTTTGATGTAGAAAATTCGGAGCGTGCATTGAGAGGGTGTATGTGCACTACCGTGAGGGAGGGAAGGAACCGCCGTTGTTTGGGAAGGTGGTGTTTGTGGCGTCTTCGATACCAGCCATCATTCTGGAAGGAAAAGATGAAGCCAAGTTTTGTATTGAGAGCAGGACGATGTGGTGTAAGAGGTACGAGGCCAGAAAGGCTCGCTACAGGCTTTGCCGAGGGCGATGATGAACCAACTCATCCAAATCACCGCCGCCGCCACCACCAGCACCAGCACCAGCACCAGCACCAGCACCACCCTTATCATCATGTTCTCATATCAGATCAAAAGTATCT

mRNA sequence

TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGTCCACAGACAGAGCGCAGCCACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGCAGAGATGGGTGATAAGGAGGCAGTGGAGGAGGGGACTACCAACGGAGGAGGTGACCTGAACCCAAATGCAAAGGAGTGGAGCCCCATTCACGATTCCGCGCCGGAGGAAGATCGCTGCCTGTTTCTGACCTTCTCCAATGGGTACCCGCTGACTGAGCACCAGATCGTCCACTTCTTCACCCGAAAATTCGGAGCGTGCATTGAGAGGGTGTATGTGCACTACCGTGAGGGAGGGAAGGAACCGCCGTTGTTTGGGAAGGTGGTGTTTGTGGCGTCTTCGATACCAGCCATCATTCTGGAAGGAAAAGATGAAGCCAAGTTTTGTATTGAGAGCAGGACGATGTGGTGTAAGAGGTACGAGGCCAGAAAGGCTCGCTACAGGCTTTGCCGAGGGCGATGATGAACCAACTCATCCAAATCACCGCCGCCGCCACCACCAGCACCAGCACCAGCACCAGCACCAGCACCACCCTTATCATCATGTTCTCATATCAGATCAAAAGTATCT

Coding sequence (CDS)

ATGGGTGATAAGGAGGCAGTGGAGGAGGGGACTACCAACGGAGGAGGTGACCTGAACCCAAATGCAAAGGAGTGGAGCCCCATTCACGATTCCGCGCCGGAGGAAGATCGCTGCCTGTTTCTGACCTTCTCCAATGGGTACCCGCTGACTGAGCACCAGATCGTCCACTTCTTCACCCGAAAATTCGGAGCGTGCATTGAGAGGGTGTATGTGCACTACCGTGAGGGAGGGAAGGAACCGCCGTTGTTTGGGAAGGTGGTGTTTGTGGCGTCTTCGATACCAGCCATCATTCTGGAAGGAAAAGATGAAGCCAAGTTTTGTATTGAGAGCAGGACGATGTGGTGTAAGAGGTACGAGGCCAGAAAGGCTCGCTACAGGCTTTGCCGAGGGCGATGA

Protein sequence

MGDKEAVEEGTTNGGGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYREGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKARYRLCRGR

Homology

[Close]

BLAST of Cp4.1LG03g15680 vs. TrEMBL
Match: A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 15  GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYR 74
           G DLNPNAKEW+PI+D APEEDRCLFLTFSNG+PLTE+QIV FFTR        VYVHY 
Sbjct: 9   GADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR--------VYVHYP 68

Query: 75  EGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKARYR 127
           EGGK+ PLFGKVVFVASSIPAI+L GK+EAKF I+++TMWCK++E+RKAR R
Sbjct: 69  EGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

[Close]

BLAST of Cp4.1LG03g15680 vs. TrEMBL
Match: V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYRE-- 77
           LNP AKEW+P  + APEEDRCLFLTFSNGYPL E+QIV FFT KFG C+E+VYVH  E  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 78  GGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
              EPPLFGKVVF AS IPA+IL G  + KF ++ + +WCK++E +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

[Close]

BLAST of Cp4.1LG03g15680 vs. TrEMBL
Match: A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHY---R 77
           LNP AKEW+P  + APEEDRCLFLTFSNGYPLTE+QI +FFT+K+G  +ERVYVH+   +
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 78  EGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKARYR 127
            G K  PLFGKVVF AS IP +IL G++E KF ++++ +WCKR++  K   R
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRR 282

[Close]

BLAST of Cp4.1LG03g15680 vs. TrEMBL
Match: B9MV19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.3e-32
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 15  GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYR 74
           G  LNP+AKEW+P+ + A EE+RCLFLTFSNGYPLTE QI  FFT  +G+C+ERVYVH+ 
Sbjct: 168 GSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWP 227

Query: 75  EGGKE--PPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
           E   +  PPLFGKVVF AS IPA+IL GK EAKF ++++ +W KR+  +K
Sbjct: 228 EPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

[Close]

BLAST of Cp4.1LG03g15680 vs. TrEMBL
Match: B9RD30_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-32
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFG-ACIERVYVHY--- 77
           LNP A+EW+P  +   EEDRCLFLTFSNGYPLTE QI+ FF  K+G +C+ERVYVH+   
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDP 221

Query: 78  REGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
           R G KEPPLFGKVVF A  IP +IL GK EAKF ++ R +WCKR++ +K
Sbjct: 222 RSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

[Close]

BLAST of Cp4.1LG03g15680 vs. TAIR10
Match: AT5G13620.1 (AT5G13620.1 unknown protein)

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-14
Identity = 34/94 (36.17%), Postives = 57/94 (60.64%), Query Frame = 1


Query: 30  DSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYREGGKEPPLFGKVVFV 89
           + A E+DR +FLTFS GYPL+E ++  +FTR+FG  IE + +   EG ++      V+  
Sbjct: 195 EQAREDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMPGGEGNEQALYAKMVLHS 254

Query: 90  ASSIPAIILEGKDEAKFCIESRTMWCKRYEARKA 124
           A+ IP I+ +G +  K+ I  + +W ++Y  R +
Sbjct: 255 AAMIPEIVSDGIERNKYTINGKHVWARKYIPRSS 288

[Close]

BLAST of Cp4.1LG03g15680 vs. TAIR10
Match: AT1G49290.1 (AT1G49290.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-10
Identity = 36/93 (38.71%), Postives = 55/93 (59.14%), Query Frame = 1


Query: 35  EDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYREGGKEPPLFGKVV--FVASS 94
           +DR +FLTFS GYP++E ++  +FTR+FG  IE V +   E   E PLF K+V     +S
Sbjct: 240 DDRTVFLTFSKGYPISEAEVRVYFTRRFGEVIEAVEMQEVE-ANEQPLFAKMVMKLQCAS 299

Query: 95  IPAIILEGKDEAKFCIESRTMWCKRYEARKARY 126
           +   I+  +   KF I+ + +W ++Y  RK  Y
Sbjct: 300 MMDEIVSARFRNKFTIDGKHVWARKY-VRKNPY 330

[Close]

BLAST of Cp4.1LG03g15680 vs. TAIR10
Match: AT1G64870.1 (AT1G64870.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-10
Identity = 33/111 (29.73%), Postives = 62/111 (55.86%), Query Frame = 1


Query: 25  WSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGA-CIERVYVHYREGG------ 84
           W+  H  A +++R +FLTFS G+P++  +++H FT  +G  C+E VY+   +GG      
Sbjct: 192 WNANH-VATDKERTVFLTFSRGFPVSHAEVIHLFTEIYGEDCVESVYMP-EDGGNSSNDN 251

Query: 85  ------KEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
                 ++ PLF K+V  +      IL G+++ K+ I  + +W ++++  K
Sbjct: 252 TNCNGHQQQPLFAKMVLDSVVTVDRILSGQEKQKYKINGKHIWARKFKNNK 300

[Close]

BLAST of Cp4.1LG03g15680 vs. TAIR10
Match: AT3G45200.1 (AT3G45200.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 30/102 (29.41%), Postives = 56/102 (54.90%), Query Frame = 1


Query: 32  APEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGA-CIERVYVHY----------REGGKEP 91
           A E DR LFLTFS GYP+T  +I+  FT+++G  C+E VY+ +              ++ 
Sbjct: 199 ATENDRTLFLTFSRGYPVTHAEIIELFTKEYGENCVEGVYMQHDNKRSFNANANRSCEQQ 258

Query: 92  PLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
            LF ++V  + +    +L+ + + +  I  + +W ++Y+ R+
Sbjct: 259 SLFARLVLDSVTTVDRVLDDEQKKELMIYGKNIWARKYDKRE 300

[Close]

BLAST of Cp4.1LG03g15680 vs. TAIR10
Match: AT5G11220.1 (AT5G11220.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 5.9e-09
Identity = 27/98 (27.55%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 32  APEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGA-CIERVYV----------HYREGGKEP 91
           A + +R +F+TFS G+P+++ ++  FFT+ +G  C+E VY+          +  + G++ 
Sbjct: 162 ATDNERTMFITFSRGFPVSQAEVKRFFTKNYGENCVEGVYMKEDNKNFLNANGNDNGQQQ 221

Query: 92  PLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRY 119
            LF K+V  + +    IL+G+   +F    + +W ++Y
Sbjct: 222 SLFAKLVLNSVATVDRILDGEKIKRFKSNGKHIWARKY 259

[Close]

BLAST of Cp4.1LG03g15680 vs. NCBI nr
Match: gi|700201235|gb|KGN56368.1| (hypothetical protein Csa_3G118030 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 15  GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYR 74
           G DLNPNAKEW+PI+D APEEDRCLFLTFSNG+PLTE+QIV FFTR        VYVHY 
Sbjct: 9   GADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR--------VYVHYP 68

Query: 75  EGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKARYR 127
           EGGK+ PLFGKVVFVASSIPAI+L GK+EAKF I+++TMWCK++E+RKAR R
Sbjct: 69  EGGKQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

[Close]

BLAST of Cp4.1LG03g15680 vs. NCBI nr
Match: gi|567905778|ref|XP_006445377.1| (hypothetical protein CICLE_v10024012mg [Citrus clementina])

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-33
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1


Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYRE-- 77
           LNP AKEW+P  + APEEDRCLFLTFSNGYPL E+QIV FFT KFG C+E+VYVH  E  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 78  GGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
              EPPLFGKVVF AS IPA+IL G  + KF ++ + +WCK++E +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

[Close]

BLAST of Cp4.1LG03g15680 vs. NCBI nr
Match: gi|802700956|ref|XP_012083856.1| (PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas])

HSP 1 Score: 146.7 bits (369), Expect = 2.8e-32
Identity = 67/112 (59.82%), Postives = 86/112 (76.79%), Query Frame = 1


Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHY---R 77
           LNP AKEW+P  + APEEDRCLFLTFSNGYPLTE+QI +FFT+K+G  +ERVYVH+   +
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 78  EGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARKARYR 127
            G K  PLFGKVVF AS IP +IL G++E KF ++++ +WCKR++  K   R
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRR 282

[Close]

BLAST of Cp4.1LG03g15680 vs. NCBI nr
Match: gi|566202713|ref|XP_006375225.1| (hypothetical protein POPTR_0014s05440g [Populus trichocarpa])

HSP 1 Score: 146.0 bits (367), Expect = 4.7e-32
Identity = 67/110 (60.91%), Postives = 85/110 (77.27%), Query Frame = 1


Query: 15  GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFGACIERVYVHYR 74
           G  LNP+AKEW+P+ + A EE+RCLFLTFSNGYPLTE QI  FFT  +G+C+ERVYVH+ 
Sbjct: 168 GSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWP 227

Query: 75  EGGKE--PPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
           E   +  PPLFGKVVF AS IPA+IL GK EAKF ++++ +W KR+  +K
Sbjct: 228 EPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

[Close]

BLAST of Cp4.1LG03g15680 vs. NCBI nr
Match: gi|255541110|ref|XP_002511619.1| (PREDICTED: uncharacterized protein LOC8265814 [Ricinus communis])

HSP 1 Score: 145.6 bits (366), Expect = 6.1e-32
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1


Query: 18  LNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTRKFG-ACIERVYVHY--- 77
           LNP A+EW+P  +   EEDRCLFLTFSNGYPLTE QI+ FF  K+G +C+ERVYVH+   
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDP 221

Query: 78  REGGKEPPLFGKVVFVASSIPAIILEGKDEAKFCIESRTMWCKRYEARK 123
           R G KEPPLFGKVVF A  IP +IL GK EAKF ++ R +WCKR++ +K
Sbjct: 222 RSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g15680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG03g15680 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3N4_CUCSA	1.1e-40	74.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1	[more]
V4TYD6_9ROSI	3.0e-33	63.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1	[more]
A0A067K989_JATCU	1.9e-32	59.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1	[more]
B9MV19_POPTR	3.3e-32	60.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1	[more]
B9RD30_RICCO	4.3e-32	62.39	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1	[more]

BLAST of Cp4.1LG03g15680 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13620.1	8.0e-14	36.17	unknown protein	[more]
AT1G49290.1	1.1e-10	38.71	unknown protein	[more]
AT1G64870.1	1.8e-10	29.73	unknown protein	[more]
AT3G45200.1	3.1e-10	29.41	unknown protein	[more]
AT5G11220.1	5.9e-09	27.55	unknown protein	[more]

BLAST of Cp4.1LG03g15680 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201235\|gb\|KGN56368.1\|	1.6e-40	74.11	hypothetical protein Csa_3G118030 [Cucumis sativus]	[more]
gi\|567905778\|ref\|XP_006445377.1\|	4.3e-33	63.55	hypothetical protein CICLE_v10024012mg [Citrus clementina]	[more]
gi\|802700956\|ref\|XP_012083856.1\|	2.8e-32	59.82	PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas]	[more]
gi\|566202713\|ref\|XP_006375225.1\|	4.7e-32	60.91	hypothetical protein POPTR_0014s05440g [Populus trichocarpa]	[more]
gi\|255541110\|ref\|XP_002511619.1\|	6.1e-32	62.39	PREDICTED: uncharacterized protein LOC8265814 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g15680.1	Cp4.1LG03g15680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33527	FAMILY NOT NAMED	coord: 15..123 score: 1.7
None	No IPR available	PANTHER	PTHR33527:SF6	SUBFAMILY NOT NAMED	coord: 15..123 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g15680	CmaCh14G021470	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g15680	CmaCh06G009740	Cucurbita maxima (Rimu)	cmacpeB839
Cp4.1LG03g15680	CmoCh06G009960	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g15680	Cla021102	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g15680	Csa3G118030	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g15680	MELO3C005973	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g15680	ClCG05G000350	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g15680	CSPI03G07390	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g15680	Lsi05G021880	Bottle gourd (USVL1VR-Ls)	cpelsiB506
Cp4.1LG03g15680	MELO3C005973.2	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g15680	CsaV3_3G007510	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g15680	Bhi01G000420	Wax gourd	cpewgoB0770
Cp4.1LG03g15680	CsGy3G007510	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g15680	Carg17670	Silver-seed gourd	carcpeB0192
Cp4.1LG03g15680	Carg24162	Silver-seed gourd	carcpeB0144

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g15680	Cp4.1LG08g00550	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g15680	Melon (DHL92) v3.6.1	cpemedB651
Cp4.1LG03g15680	Cucumber (Chinese Long) v3	cpecucB0774
Cp4.1LG03g15680	Wax gourd	cpewgoB0761
Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	cpecpeB217
Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	cpecpeB479
Cp4.1LG03g15680	Cucumber (Gy14) v1	cgycpeB0574
Cp4.1LG03g15680	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g15680	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g15680	Cucurbita moschata (Rifu)	cmocpeB589
Cp4.1LG03g15680	Wild cucumber (PI 183967)	cpecpiB624
Cp4.1LG03g15680	Cucumber (Chinese Long) v2	cpecuB622