CmaCh06G009740 (gene) Cucurbita maxima (Rimu)

NameCmaCh06G009740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
LocationCma_Chr06 : 6608577 .. 6609171 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACACACACTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCCAATGGAAACCCGCTCTCCGAGCACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTCTAACCTTCTTTCATAAACTATCGTATCTATTATTTCTTGTAGTGTTCTGTTCACGAGAGGGTGTTCTCTAGAAGTTTTTGTAAGGAGGGGTGGATAGAATTTAAGGGATTTTAAAAAGATTTGAACTTTTTAACCGATCTATCAACAAAATAGAGTTTTAGGGCGAACGAAAAACGAAGCTCTCGTTATTTCGATTTCGTTTCGTTATTGAATCTTCTTTGCTTTTAATTGATCTAAACAGAAAATACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGAAGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAGACTCGATTTAGAGTTTAG

mRNA sequence

ACACACACACTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCCAATGGAAACCCGCTCTCCGAGCACCAAATTGTTAACTTCTTCACTCGAAAATACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGAAGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAGACTCGATTTAGAGTTTAG

Coding sequence (CDS)

ACACACACACTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCCAATGGAAACCCGCTCTCCGAGCACCAAATTGTTAACTTCTTCACTCGAAAATACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGAAGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAGACTCGATTTAGAGTTTAG

Protein sequence

THTLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARKTRFRV
BLAST of CmaCh06G009740 vs. TrEMBL
Match: A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-42
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGG 63
           LNP AKEWNP++DCAPEEDRCLFLTFSNG PL+E+QIV FFTR        VYVHYP+GG
Sbjct: 12  LNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR--------VYVHYPEGG 71

Query: 64  TQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARKTRFR 113
            QLPLFGKVVFVASSIPAI+LGGKEEAKFSI++KT+WCK++E+RK R R
Sbjct: 72  KQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

BLAST of CmaCh06G009740 vs. TrEMBL
Match: A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-33
Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYP--- 63
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QI NFFT+KYG  +ERVYVH+P   
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 64  DGGTQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARKTRFR 113
           +G    PLFGKVVF AS IP +IL G+ E KF +++K LWCKR++  K   R
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRR 282

BLAST of CmaCh06G009740 vs. TrEMBL
Match: V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 7.4e-33
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPD-- 63
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QIV FFT K+G C+E+VYVH P+  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 64  GGTQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
             ++ PLFGKVVF AS IPA+IL G ++ KF ++ K LWCK++E +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

BLAST of CmaCh06G009740 vs. TrEMBL
Match: B9MV19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.2e-32
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGG 63
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT  YGSC+ERVYVH+P+  
Sbjct: 171 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPK 230

Query: 64  TQ--LPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
            Q   PLFGKVVF AS IPA+IL GK EAKF +++K LW KR+  +K
Sbjct: 231 DQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

BLAST of CmaCh06G009740 vs. TrEMBL
Match: B9RD30_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.1e-31
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYG-SCIERVYVHYPD- 63
           LNP A+EWNP  +   EEDRCLFLTFSNG PL+E QI+ FF  KYG SC+ERVYVH+PD 
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFNEKYGPSCVERVYVHWPDP 221

Query: 64  --GGTQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
             G  + PLFGKVVF A  IP +IL GK+EAKF ++ + LWCKR++ +K
Sbjct: 222 RSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKRPLWCKRFDPKK 270

BLAST of CmaCh06G009740 vs. TAIR10
Match: AT5G13620.1 (AT5G13620.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.5e-13
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1

Query: 18  APEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGGTQLPLFGKVVFVAS 77
           A E+DR +FLTFS G PLSE ++  +FTR++G  IE + +   +G  Q      V+  A+
Sbjct: 197 AREDDRTVFLTFSRGYPLSEAEVHAYFTRRFGEIIEAIIMPGGEGNEQALYAKMVLHSAA 256

Query: 78  SIPAIILGGKEEAKFSIESKTLWCKRYEARKT 110
            IP I+  G E  K++I  K +W ++Y  R +
Sbjct: 257 MIPEIVSDGIERNKYTINGKHVWARKYIPRSS 288

BLAST of CmaCh06G009740 vs. TAIR10
Match: AT1G64870.1 (AT1G64870.1 unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11
Identity = 36/104 (34.62%), Postives = 57/104 (54.81%), Query Frame = 1

Query: 18  APEEDRCLFLTFSNGNPLSEHQIVNFFTRKYG-SCIERVYVHYPDGGT------------ 77
           A +++R +FLTFS G P+S  ++++ FT  YG  C+E VY+   DGG             
Sbjct: 198 ATDKERTVFLTFSRGFPVSHAEVIHLFTEIYGEDCVESVYMP-EDGGNSSNDNTNCNGHQ 257

Query: 78  QLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
           Q PLF K+V  +      IL G+E+ K+ I  K +W ++++  K
Sbjct: 258 QQPLFAKMVLDSVVTVDRILSGQEKQKYKINGKHIWARKFKNNK 300

BLAST of CmaCh06G009740 vs. TAIR10
Match: AT1G49290.1 (AT1G49290.1 unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-10
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1

Query: 21  EDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGGTQLPLFGKVV--FVASS 80
           +DR +FLTFS G P+SE ++  +FTR++G  IE V +   +   Q PLF K+V     +S
Sbjct: 240 DDRTVFLTFSKGYPISEAEVRVYFTRRFGEVIEAVEMQEVEANEQ-PLFAKMVMKLQCAS 299

Query: 81  IPAIILGGKEEAKFSIESKTLWCKRY 105
           +   I+  +   KF+I+ K +W ++Y
Sbjct: 300 MMDEIVSARFRNKFTIDGKHVWARKY 324

BLAST of CmaCh06G009740 vs. TAIR10
Match: AT5G11220.1 (AT5G11220.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.7e-10
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 1

Query: 18  APEEDRCLFLTFSNGNPLSEHQIVNFFTRKYG-SCIERVYV----------HYPDGGTQL 77
           A + +R +F+TFS G P+S+ ++  FFT+ YG +C+E VY+          +  D G Q 
Sbjct: 162 ATDNERTMFITFSRGFPVSQAEVKRFFTKNYGENCVEGVYMKEDNKNFLNANGNDNGQQQ 221

Query: 78  PLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRY 105
            LF K+V  + +    IL G++  +F    K +W ++Y
Sbjct: 222 SLFAKLVLNSVATVDRILDGEKIKRFKSNGKHIWARKY 259

BLAST of CmaCh06G009740 vs. TAIR10
Match: AT3G45200.1 (AT3G45200.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = 1

Query: 11  WNPLFDC-APEEDRCLFLTFSNGNPLSEHQIVNFFTRKYG-SCIERVYVHYPDGGT---- 70
           WN   +C A E DR LFLTFS G P++  +I+  FT++YG +C+E VY+ + +  +    
Sbjct: 193 WNA--NCIATENDRTLFLTFSRGYPVTHAEIIELFTKEYGENCVEGVYMQHDNKRSFNAN 252

Query: 71  ------QLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
                 Q  LF ++V  + +    +L  +++ +  I  K +W ++Y+ R+
Sbjct: 253 ANRSCEQQSLFARLVLDSVTTVDRVLDDEQKKELMIYGKNIWARKYDKRE 300

BLAST of CmaCh06G009740 vs. NCBI nr
Match: gi|700201235|gb|KGN56368.1| (hypothetical protein Csa_3G118030 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.3e-42
Identity = 83/109 (76.15%), Postives = 95/109 (87.16%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGG 63
           LNP AKEWNP++DCAPEEDRCLFLTFSNG PL+E+QIV FFTR        VYVHYP+GG
Sbjct: 12  LNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR--------VYVHYPEGG 71

Query: 64  TQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARKTRFR 113
            QLPLFGKVVFVASSIPAI+LGGKEEAKFSI++KT+WCK++E+RK R R
Sbjct: 72  KQLPLFGKVVFVASSIPAIVLGGKEEAKFSIDTKTMWCKKFESRKARSR 112

BLAST of CmaCh06G009740 vs. NCBI nr
Match: gi|802700956|ref|XP_012083856.1| (PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas])

HSP 1 Score: 148.7 bits (374), Expect = 6.3e-33
Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYP--- 63
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QI NFFT+KYG  +ERVYVH+P   
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPFVERVYVHWPNPK 230

Query: 64  DGGTQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARKTRFR 113
           +G    PLFGKVVF AS IP +IL G+ E KF +++K LWCKR++  K   R
Sbjct: 231 NGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKPLWCKRFDPEKKNRR 282

BLAST of CmaCh06G009740 vs. NCBI nr
Match: gi|567905778|ref|XP_006445377.1| (hypothetical protein CICLE_v10024012mg [Citrus clementina])

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 67/107 (62.62%), Postives = 84/107 (78.50%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPD-- 63
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QIV FFT K+G C+E+VYVH P+  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTNKFGPCVEKVYVHSPEPT 105

Query: 64  GGTQLPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
             ++ PLFGKVVF AS IPA+IL G ++ KF ++ K LWCK++E +K
Sbjct: 106 SVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPLWCKKFEPKK 152

BLAST of CmaCh06G009740 vs. NCBI nr
Match: gi|566202713|ref|XP_006375225.1| (hypothetical protein POPTR_0014s05440g [Populus trichocarpa])

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGG 63
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT  YGSC+ERVYVH+P+  
Sbjct: 171 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPK 230

Query: 64  TQ--LPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
            Q   PLFGKVVF AS IPA+IL GK EAKF +++K LW KR+  +K
Sbjct: 231 DQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPLWGKRFNPKK 277

BLAST of CmaCh06G009740 vs. NCBI nr
Match: gi|743935671|ref|XP_011012208.1| (PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica])

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-31
Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = 1

Query: 4   LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRKYGSCIERVYVHYPDGG 63
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT  YGSC+ERVYVH+P+  
Sbjct: 172 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTMNYGSCVERVYVHWPEPK 231

Query: 64  TQ--LPLFGKVVFVASSIPAIILGGKEEAKFSIESKTLWCKRYEARK 109
            Q   PLFGKVVF AS +PA+IL GK EAKF +++K LW KR++ +K
Sbjct: 232 DQGAPPLFGKVVFTASYVPAMILNGKIEAKFWVDAKPLWGKRFKPKK 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3N4_CUCSA2.3e-4276.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1[more]
A0A067K989_JATCU4.4e-3362.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1[more]
V4TYD6_9ROSI7.4e-3362.62Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1[more]
B9MV19_POPTR8.2e-3264.49Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1[more]
B9RD30_RICCO4.1e-3161.47Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G13620.14.5e-1338.04 unknown protein[more]
AT1G64870.13.2e-1134.62 unknown protein[more]
AT1G49290.12.1e-1037.21 unknown protein[more]
AT5G11220.12.7e-1032.65 unknown protein[more]
AT3G45200.13.5e-1030.91 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700201235|gb|KGN56368.1|3.3e-4276.15hypothetical protein Csa_3G118030 [Cucumis sativus][more]
gi|802700956|ref|XP_012083856.1|6.3e-3362.50PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas][more]
gi|567905778|ref|XP_006445377.1|1.1e-3262.62hypothetical protein CICLE_v10024012mg [Citrus clementina][more]
gi|566202713|ref|XP_006375225.1|1.2e-3164.49hypothetical protein POPTR_0014s05440g [Populus trichocarpa][more]
gi|743935671|ref|XP_011012208.1|2.0e-3163.55PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G009740.1CmaCh06G009740.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33527FAMILY NOT NAMEDcoord: 4..108
score: 1.6
NoneNo IPR availablePANTHERPTHR33527:SF6SUBFAMILY NOT NAMEDcoord: 4..108
score: 1.6