Cp4.1LG08g00550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	CUGBP Elav-like family member 4
Location	Cp4.1LG08 : 4174872 .. 4175487 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCCCTCCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCCAATGGAAACCCGCTCTCCGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTTTCACCTTGAAACTATCGTATCTATTATTTCTTGTAGTGTTCTGTTCACCCGAGGGTGTTCTCTCGAGGTTTTTGTAAGGAGGGGTCGATAGAATTTGAGGGATTTTAAAAAGATTTGAACTTTTTAATAGATCTATCGACAAAATAGAGTTCTAGGGCGAACGAAAAACGAAGCTCTCGTTATTTCGATTTCGTTTCGTTATTGAATCTTCTTCGTTTTTAATTGATATAAACAGAAAATACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAG

mRNA sequence

ATGGACTCCCTCCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCCAATGGAAACCCGCTCTCCGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTTTCACCTTGAAACTATCGTATCTATTATTTCTTGTAGTGTTCTGTTCACCCGAGGAAAATACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAG

Coding sequence (CDS)

ATGGACTCCCTCCAGGGCTTTAATGGCGCTGATCATTTGAACCCTCAGGCCAAAGAATGGAACCCTCTTTTCGATTGCGCTCCCGAGGAAGATCGCTGCCTCTTTCTCACTTTCTCCAATGGAAACCCGCTCTCCGAACACCAAATTGTTAACTTCTTCACTCGGTACGCCCTTTTTCACCTTGAAACTATCGTATCTATTATTTCTTGTAGTGTTCTGTTCACCCGAGGAAAATACGGGTCGTGCATCGAAAGGGTATACGTGCATTATCCGGACGGAGGGACTCAATTGCCATTGTTTGGGAAGGTGGTATTTGTTGCATCTTCAATACCAGCAATAATTCTAGGAGGAAAAGACGAAGCCAAGTTTTCGATTGAGAGCAAGACGTTATGGTGTAAGAGATACGAGGCTCGAAAAACTCGATTTAGAGTTTAG

Protein sequence

MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSVLFTRGKYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKTRFRV

Homology

[Close]

BLAST of Cp4.1LG08g00550 vs. TrEMBL
Match: A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 1


Query: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFH 60
           M +++ FNGAD LNP AKEWNP++DCAPEEDRCLFLTFSNG PL+E+QIV FFTR     
Sbjct: 1   MGTVEVFNGAD-LNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR----- 60

Query: 61  LETIVSIISCSVLFTRGKYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDE 120
                                    VYVHYP+GG QLPLFGKVVFVASSIPAI+LGGK+E
Sbjct: 61  -------------------------VYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEE 112

Query: 121 AKFSIESKTLWCKRYEARKTRFR 144
           AKFSI++KT+WCK++E+RK R R
Sbjct: 121 AKFSIDTKTMWCKKFESRKARSR 112

[Close]

BLAST of Cp4.1LG08g00550 vs. TrEMBL
Match: A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 70/134 (52.24%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QI NFFT+                 
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQ----------------- 230

Query: 73  LFTRGKYGSCIERVYVHYP---DGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKT 132
                KYG  +ERVYVH+P   +G    PLFGKVVF AS IP +IL G++E KF +++K 
Sbjct: 231 -----KYGPFVERVYVHWPNPKNGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKP 282

Query: 133 LWCKRYEARKTRFR 144
           LWCKR++  K   R
Sbjct: 291 LWCKRFDPEKKNRR 282

[Close]

BLAST of Cp4.1LG08g00550 vs. TrEMBL
Match: V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.3e-29
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QIV FFT                  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTN----------------- 105

Query: 73  LFTRGKYGSCIERVYVHYPD--GGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTL 132
                K+G C+E+VYVH P+    ++ PLFGKVVF AS IPA+IL G  + KF ++ K L
Sbjct: 106 -----KFGPCVEKVYVHSPEPTSVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPL 152

Query: 133 WCKRYEARK 140
           WCK++E +K
Sbjct: 166 WCKKFEPKK 152

[Close]

BLAST of Cp4.1LG08g00550 vs. TrEMBL
Match: B9MV19_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-28
Identity = 69/129 (53.49%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT                  
Sbjct: 171 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTM----------------- 230

Query: 73  LFTRGKYGSCIERVYVHYPDGGTQ--LPLFGKVVFVASSIPAIILGGKDEAKFSIESKTL 132
                 YGSC+ERVYVH+P+   Q   PLFGKVVF AS IPA+IL GK EAKF +++K L
Sbjct: 231 -----NYGSCVERVYVHWPEPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPL 277

Query: 133 WCKRYEARK 140
           W KR+  +K
Sbjct: 291 WGKRFNPKK 277

[Close]

BLAST of Cp4.1LG08g00550 vs. TrEMBL
Match: B9RD30_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.6e-27
Identity = 67/131 (51.15%), Postives = 81/131 (61.83%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP A+EWNP  +   EEDRCLFLTFSNG PL+E QI+ FF                   
Sbjct: 162 LNPFAEEWNPTVERVSEEDRCLFLTFSNGYPLTETQILKFFNE----------------- 221

Query: 73  LFTRGKYG-SCIERVYVHYPD---GGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESK 132
                KYG SC+ERVYVH+PD   G  + PLFGKVVF A  IP +IL GK EAKF ++ +
Sbjct: 222 -----KYGPSCVERVYVHWPDPRSGRKEPPLFGKVVFKAFYIPVVILNGKKEAKFWVDKR 270

Query: 133 TLWCKRYEARK 140
            LWCKR++ +K
Sbjct: 282 PLWCKRFDPKK 270

[Close]

BLAST of Cp4.1LG08g00550 vs. TAIR10
Match: AT5G13620.1 (AT5G13620.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-09
Identity = 34/114 (29.82%), Postives = 54/114 (47.37%), Query Frame = 1


Query: 27  APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSVLFTRGKYGSCIERV 86
           A E+DR +FLTFS G PLSE ++  +FTR                      ++G  IE +
Sbjct: 197 AREDDRTVFLTFSRGYPLSEAEVHAYFTR----------------------RFGEIIEAI 256

Query: 87  YVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRYEARKT 141
            +   +G  Q      V+  A+ IP I+  G +  K++I  K +W ++Y  R +
Sbjct: 257 IMPGGEGNEQALYAKMVLHSAAMIPEIVSDGIERNKYTINGKHVWARKYIPRSS 288

[Close]

BLAST of Cp4.1LG08g00550 vs. TAIR10
Match: AT1G64870.1 (AT1G64870.1 unknown protein)

HSP 1 Score: 51.6 bits (122), Expect = 4.7e-07
Identity = 35/126 (27.78%), Postives = 57/126 (45.24%), Query Frame = 1


Query: 27  APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSVLFTRGKYG-SCIER 86
           A +++R +FLTFS G P+S  ++++ FT                        YG  C+E 
Sbjct: 198 ATDKERTVFLTFSRGFPVSHAEVIHLFTEI----------------------YGEDCVES 257

Query: 87  VYVHYPDGGT------------QLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCK 140
           VY+   DGG             Q PLF K+V  +      IL G+++ K+ I  K +W +
Sbjct: 258 VYMP-EDGGNSSNDNTNCNGHQQQPLFAKMVLDSVVTVDRILSGQEKQKYKINGKHIWAR 300

[Close]

BLAST of Cp4.1LG08g00550 vs. TAIR10
Match: AT1G49290.1 (AT1G49290.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 32/108 (29.63%), Postives = 52/108 (48.15%), Query Frame = 1


Query: 30  EDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSVLFTRGKYGSCIERVYVH 89
           +DR +FLTFS G P+SE ++  +FTR                      ++G  IE V + 
Sbjct: 240 DDRTVFLTFSKGYPISEAEVRVYFTR----------------------RFGEVIEAVEMQ 299

Query: 90  YPDGGTQLPLFGKVV--FVASSIPAIILGGKDEAKFSIESKTLWCKRY 136
             +   Q PLF K+V     +S+   I+  +   KF+I+ K +W ++Y
Sbjct: 300 EVEANEQ-PLFAKMVMKLQCASMMDEIVSARFRNKFTIDGKHVWARKY 324

[Close]

BLAST of Cp4.1LG08g00550 vs. TAIR10
Match: AT5G11220.1 (AT5G11220.1 unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 4.0e-06
Identity = 32/120 (26.67%), Postives = 53/120 (44.17%), Query Frame = 1


Query: 27  APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSVLFTRGKYG-SCIER 86
           A + +R +F+TFS G P+S+ ++  FFT+                       YG +C+E 
Sbjct: 162 ATDNERTMFITFSRGFPVSQAEVKRFFTK----------------------NYGENCVEG 221

Query: 87  VYV----------HYPDGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTLWCKRY 136
           VY+          +  D G Q  LF K+V  + +    IL G+   +F    K +W ++Y
Sbjct: 222 VYMKEDNKNFLNANGNDNGQQQSLFAKLVLNSVATVDRILDGEKIKRFKSNGKHIWARKY 259

[Close]

BLAST of Cp4.1LG08g00550 vs. TAIR10
Match: AT3G45200.1 (AT3G45200.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 34/132 (25.76%), Postives = 60/132 (45.45%), Query Frame = 1


Query: 20  WNPLFDC-APEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSVLFTRGK 79
           WN   +C A E DR LFLTFS G P++  +I+  FT+                      +
Sbjct: 193 WNA--NCIATENDRTLFLTFSRGYPVTHAEIIELFTK----------------------E 252

Query: 80  YG-SCIERVYVHYPDGGT----------QLPLFGKVVFVASSIPAIILGGKDEAKFSIES 139
           YG +C+E VY+ + +  +          Q  LF ++V  + +    +L  + + +  I  
Sbjct: 253 YGENCVEGVYMQHDNKRSFNANANRSCEQQSLFARLVLDSVTTVDRVLDDEQKKELMIYG 300

[Close]

BLAST of Cp4.1LG08g00550 vs. NCBI nr
Match: gi|700201235|gb|KGN56368.1| (hypothetical protein Csa_3G118030 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 9.4e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 1


Query: 1   MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFH 60
           M +++ FNGAD LNP AKEWNP++DCAPEEDRCLFLTFSNG PL+E+QIV FFTR     
Sbjct: 1   MGTVEVFNGAD-LNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR----- 60

Query: 61  LETIVSIISCSVLFTRGKYGSCIERVYVHYPDGGTQLPLFGKVVFVASSIPAIILGGKDE 120
                                    VYVHYP+GG QLPLFGKVVFVASSIPAI+LGGK+E
Sbjct: 61  -------------------------VYVHYPEGGKQLPLFGKVVFVASSIPAIVLGGKEE 112

Query: 121 AKFSIESKTLWCKRYEARKTRFR 144
           AKFSI++KT+WCK++E+RK R R
Sbjct: 121 AKFSIDTKTMWCKKFESRKARSR 112

[Close]

BLAST of Cp4.1LG08g00550 vs. NCBI nr
Match: gi|802700956|ref|XP_012083856.1| (PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas])

HSP 1 Score: 136.3 bits (342), Expect = 4.1e-29
Identity = 70/134 (52.24%), Postives = 85/134 (63.43%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QI NFFT+                 
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQ----------------- 230

Query: 73  LFTRGKYGSCIERVYVHYP---DGGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKT 132
                KYG  +ERVYVH+P   +G    PLFGKVVF AS IP +IL G++E KF +++K 
Sbjct: 231 -----KYGPFVERVYVHWPNPKNGKKTSPLFGKVVFRASFIPILILNGQNEVKFWVDAKP 282

Query: 133 LWCKRYEARKTRFR 144
           LWCKR++  K   R
Sbjct: 291 LWCKRFDPEKKNRR 282

[Close]

BLAST of Cp4.1LG08g00550 vs. NCBI nr
Match: gi|567905778|ref|XP_006445377.1| (hypothetical protein CICLE_v10024012mg [Citrus clementina])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP  + APEEDRCLFLTFSNG PL+E+QIV FFT                  
Sbjct: 46  LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFTN----------------- 105

Query: 73  LFTRGKYGSCIERVYVHYPD--GGTQLPLFGKVVFVASSIPAIILGGKDEAKFSIESKTL 132
                K+G C+E+VYVH P+    ++ PLFGKVVF AS IPA+IL G  + KF ++ K L
Sbjct: 106 -----KFGPCVEKVYVHSPEPTSVSEPPLFGKVVFTASYIPAVILCGAKQTKFMVDGKPL 152

Query: 133 WCKRYEARK 140
           WCK++E +K
Sbjct: 166 WCKKFEPKK 152

[Close]

BLAST of Cp4.1LG08g00550 vs. NCBI nr
Match: gi|566202713|ref|XP_006375225.1| (hypothetical protein POPTR_0014s05440g [Populus trichocarpa])

HSP 1 Score: 132.1 bits (331), Expect = 7.7e-28
Identity = 69/129 (53.49%), Postives = 82/129 (63.57%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT                  
Sbjct: 171 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTM----------------- 230

Query: 73  LFTRGKYGSCIERVYVHYPDGGTQ--LPLFGKVVFVASSIPAIILGGKDEAKFSIESKTL 132
                 YGSC+ERVYVH+P+   Q   PLFGKVVF AS IPA+IL GK EAKF +++K L
Sbjct: 231 -----NYGSCVERVYVHWPEPKDQGAPPLFGKVVFTASYIPAMILNGKTEAKFWVDAKPL 277

Query: 133 WCKRYEARK 140
           W KR+  +K
Sbjct: 291 WGKRFNPKK 277

[Close]

BLAST of Cp4.1LG08g00550 vs. NCBI nr
Match: gi|743935671|ref|XP_011012208.1| (PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica])

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 68/129 (52.71%), Postives = 83/129 (64.34%), Query Frame = 1


Query: 13  LNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTRYALFHLETIVSIISCSV 72
           LNP AKEWNP+ + A EE+RCLFLTFSNG PL+E QI  FFT                  
Sbjct: 172 LNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFTM----------------- 231

Query: 73  LFTRGKYGSCIERVYVHYPDGGTQ--LPLFGKVVFVASSIPAIILGGKDEAKFSIESKTL 132
                 YGSC+ERVYVH+P+   Q   PLFGKVVF AS +PA+IL GK EAKF +++K L
Sbjct: 232 -----NYGSCVERVYVHWPEPKDQGAPPLFGKVVFTASYVPAMILNGKIEAKFWVDAKPL 278

Query: 133 WCKRYEARK 140
           W KR++ +K
Sbjct: 292 WGKRFKPKK 278

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g00550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3N4_CUCSA	6.5e-42	61.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118030 PE=4 SV=1	[more]
A0A067K989_JATCU	2.9e-29	52.24	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14611 PE=4 SV=1	[more]
V4TYD6_9ROSI	8.3e-29	51.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024012mg PE=4 SV=1	[more]
B9MV19_POPTR	5.4e-28	53.49	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s05440g PE=4 SV=1	[more]
B9RD30_RICCO	4.6e-27	51.15	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1609130 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g00550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13620.1	6.5e-09	29.82	unknown protein	[more]
AT1G64870.1	4.7e-07	27.78	unknown protein	[more]
AT1G49290.1	1.8e-06	29.63	unknown protein	[more]
AT5G11220.1	4.0e-06	26.67	unknown protein	[more]
AT3G45200.1	5.2e-06	25.76	unknown protein	[more]

BLAST of Cp4.1LG08g00550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201235\|gb\|KGN56368.1\|	9.4e-42	61.54	hypothetical protein Csa_3G118030 [Cucumis sativus]	[more]
gi\|802700956\|ref\|XP_012083856.1\|	4.1e-29	52.24	PREDICTED: uncharacterized protein LOC105643369 [Jatropha curcas]	[more]
gi\|567905778\|ref\|XP_006445377.1\|	1.2e-28	51.94	hypothetical protein CICLE_v10024012mg [Citrus clementina]	[more]
gi\|566202713\|ref\|XP_006375225.1\|	7.7e-28	53.49	hypothetical protein POPTR_0014s05440g [Populus trichocarpa]	[more]
gi\|743935671\|ref\|XP_011012208.1\|	1.3e-27	52.71	PREDICTED: uncharacterized protein LOC105116509 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00550.1	Cp4.1LG08g00550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33527	FAMILY NOT NAMED	coord: 10..55 score: 4.1E-33coord: 78..139 score: 4.1
None	No IPR available	PANTHER	PTHR33527:SF6	SUBFAMILY NOT NAMED	coord: 10..55 score: 4.1E-33coord: 78..139 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g00550	CmaCh14G021470	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g00550	CmaCh06G009740	Cucurbita maxima (Rimu)	cmacpeB855
Cp4.1LG08g00550	CmoCh14G022150	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g00550	CmoCh06G009960	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g00550	Cla021102	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g00550	Csa3G118030	Cucumber (Chinese Long) v2	cpecuB862
Cp4.1LG08g00550	MELO3C005973	Melon (DHL92) v3.5.1	cpemeB815
Cp4.1LG08g00550	ClCG05G000350	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g00550	CSPI03G07390	Wild cucumber (PI 183967)	cpecpiB864
Cp4.1LG08g00550	Lsi05G021880	Bottle gourd (USVL1VR-Ls)	cpelsiB714
Cp4.1LG08g00550	MELO3C005973.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g00550	CsaV3_3G007510	Cucumber (Chinese Long) v3	cpecucB1058
Cp4.1LG08g00550	Bhi01G000420	Wax gourd	cpewgoB1105
Cp4.1LG08g00550	CsGy3G007510	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g00550	Carg17670	Silver-seed gourd	carcpeB0194
Cp4.1LG08g00550	Carg24162	Silver-seed gourd	carcpeB0145

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g00550	Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g00550	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g00550	Cucurbita maxima (Rimu)	cmacpeB023