Bhi01G000420 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G000420
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Histidine phosphatase superfamily, clade-1
Location	chr1 : 10123388 .. 10123636 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACAGTTGAAGCCTTTAATGGTCCTGATTTGAACCCTAATGCAAAAGAATGGAACCCTATTTACGATGGCGCTCCAGAGGAAGATCGATGCCTCTTTCTCACTTTCTCGAATGGCTTCCCGCTTAACGAGCACCAAATCATCACCTTCTTCACTCGGTATGCTCAATTTTCTCTTTCTTTTGACAATAACATGTGGACGGGAAGAATGGAACATTTGATCTCAAGATTGACAGTACAAATTTAG

mRNA sequence

ATGGGCACAGTTGAAGCCTTTAATGGTCCTGATTTGAACCCTAATGCAAAAGAATGGAACCCTATTTACGATGGCGCTCCAGAGGAAGATCGATGCCTCTTTCTCACTTTCTCGAATGGCTTCCCGCTTAACGAGCACCAAATCATCACCTTCTTCACTCGGTATGCTCAATTTTCTCTTTCTTTTGACAATAACATGTGGACGGGAAGAATGGAACATTTGATCTCAAGATTGACAGTACAAATTTAG

Coding sequence (CDS)

ATGGGCACAGTTGAAGCCTTTAATGGTCCTGATTTGAACCCTAATGCAAAAGAATGGAACCCTATTTACGATGGCGCTCCAGAGGAAGATCGATGCCTCTTTCTCACTTTCTCGAATGGCTTCCCGCTTAACGAGCACCAAATCATCACCTTCTTCACTCGGTATGCTCAATTTTCTCTTTCTTTTGACAATAACATGTGGACGGGAAGAATGGAACATTTGATCTCAAGATTGACAGTACAAATTTAG

Protein sequence

MGTVEAFNGPDLNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTRYAQFSLSFDNNMWTGRMEHLISRLTVQI

Homology

[Close]

BLAST of Bhi01G000420 vs. TrEMBL
Match: tr|A0A0A0L3N4|A0A0A0L3N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118030 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-21
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGTVEAFNGPDLNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          MGTVE FNG DLNPNAKEWNPIYD APEEDRCLFLTFSNGFPL E+QI+TFFTR
Sbjct: 1  MGTVEVFNGADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR 54

[Close]

BLAST of Bhi01G000420 vs. TrEMBL
Match: tr|V4TYD6|V4TYD6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024012mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 12 LNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFT 54
          LNP AKEWNP  + APEEDRCLFLTFSNG+PL E+QI+TFFT
Sbjct: 46 LNPCAKEWNPFKERAPEEDRCLFLTFSNGYPLAENQIVTFFT 87

[Close]

BLAST of Bhi01G000420 vs. TrEMBL
Match: tr|A0A067K989|A0A067K989_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14611 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.2e-11
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 12  LNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFT-RYAQF 59
           LNP AKEWNP  + APEEDRCLFLTFSNG+PL E+QI  FFT +Y  F
Sbjct: 171 LNPFAKEWNPTLEKAPEEDRCLFLTFSNGYPLTEYQITNFFTQKYGPF 218

[Close]

BLAST of Bhi01G000420 vs. TrEMBL
Match: tr|A0A2P5CIM7|A0A2P5CIM7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_150270 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.3e-10
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 12 LNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          LNP AKEW+P  + APE+DRCLFLTFSNG+PLN+ QI  FFTR
Sbjct: 35 LNPYAKEWDPYTNKAPEQDRCLFLTFSNGYPLNQRQIRAFFTR 77

[Close]

BLAST of Bhi01G000420 vs. TrEMBL
Match: tr|A0A2K1XQX1|A0A2K1XQX1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G054900v3 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-10
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 4   VEAFNGPDLNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFT 54
           +  + G  LNP+AKEWNP+ + A EE+RCLFLTFSNG+PL E QI  FFT
Sbjct: 163 IAPYVGSKLNPSAKEWNPVTERAAEENRCLFLTFSNGYPLTESQISRFFT 212

[Close]

BLAST of Bhi01G000420 vs. NCBI nr
Match: KGN56368.1 (hypothetical protein Csa_3G118030 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 5.9e-21
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGTVEAFNGPDLNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          MGTVE FNG DLNPNAKEWNPIYD APEEDRCLFLTFSNGFPL E+QI+TFFTR
Sbjct: 1  MGTVEVFNGADLNPNAKEWNPIYDCAPEEDRCLFLTFSNGFPLTENQIVTFFTR 54

[Close]

BLAST of Bhi01G000420 vs. NCBI nr
Match: XP_022944781.1 (uncharacterized protein LOC111449194 [Cucurbita moschata])

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGTVEAFNGPD-LNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          M +++ FNG D LNP AKEWNP++D APEEDRCLFLTFSNG PL+EHQI+ FFTR
Sbjct: 1  MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR 55

[Close]

BLAST of Bhi01G000420 vs. NCBI nr
Match: XP_023540960.1 (uncharacterized protein LOC111801189 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1  MGTVEAFNGPD-LNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          M +++ FNG D LNP AKEWNP++D APEEDRCLFLTFSNG PL+EHQI+ FFTR
Sbjct: 1  MDSLQGFNGADHLNPQAKEWNPLFDCAPEEDRCLFLTFSNGNPLSEHQIVNFFTR 55

[Close]

BLAST of Bhi01G000420 vs. NCBI nr
Match: XP_022924654.1 (uncharacterized protein LOC111432088 [Cucurbita moschata])

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 9  GPDLNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          G DLNPNAKEW+PI+D APEEDRCLFLTFSNG+PL EHQI+ FFTR
Sbjct: 15 GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60

[Close]

BLAST of Bhi01G000420 vs. NCBI nr
Match: XP_022979539.1 (uncharacterized protein LOC111479214 [Cucurbita maxima])

HSP 1 Score: 89.7 bits (221), Expect = 4.9e-15
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0


Query: 9  GPDLNPNAKEWNPIYDGAPEEDRCLFLTFSNGFPLNEHQIITFFTR 55
          G DLNPNAKEW+PI+D APEEDRCLFLTFSNG+PL EHQI+ FFTR
Sbjct: 15 GGDLNPNAKEWSPIHDSAPEEDRCLFLTFSNGYPLTEHQIVHFFTR 60

The following BLAST results are available for this feature:

BLAST of Bhi01G000420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G000420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G000420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3N4\|A0A0A0L3N4_CUCSA	3.9e-21	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118030 PE=4 SV=1	[more]
tr\|V4TYD6\|V4TYD6_9ROSI	2.8e-11	78.57	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10024012mg PE=4 ...	[more]
tr\|A0A067K989\|A0A067K989_JATCU	8.2e-11	70.83	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14611 PE=4 SV=1	[more]
tr\|A0A2P5CIM7\|A0A2P5CIM7_PARAD	5.3e-10	72.09	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_150270 PE...	[more]
tr\|A0A2K1XQX1\|A0A2K1XQX1_POPTR	6.9e-10	62.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G054900v3 PE=...	[more]

BLAST of Bhi01G000420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56368.1	5.9e-21	88.89	hypothetical protein Csa_3G118030 [Cucumis sativus]	[more]
XP_022944781.1	1.7e-15	72.73	uncharacterized protein LOC111449194 [Cucurbita moschata]	[more]
XP_023540960.1	1.7e-15	72.73	uncharacterized protein LOC111801189 [Cucurbita pepo subsp. pepo]	[more]
XP_022924654.1	4.9e-15	82.61	uncharacterized protein LOC111432088 [Cucurbita moschata]	[more]
XP_022979539.1	4.9e-15	82.61	uncharacterized protein LOC111479214 [Cucurbita maxima]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M000420	Bhi01M000420	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33527	FAMILY NOT NAMED	coord: 6..58
None	No IPR available	PANTHER	PTHR33527:SF8	SUBFAMILY NOT NAMED	coord: 6..58

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G000420	Csa3G118030	Cucumber (Chinese Long) v2	cuwgoB284
Bhi01G000420	MELO3C005973	Melon (DHL92) v3.5.1	mewgoB540
Bhi01G000420	ClCG05G000350	Watermelon (Charleston Gray)	wcgwgoB439
Bhi01G000420	CSPI03G07390	Wild cucumber (PI 183967)	cpiwgoB284
Bhi01G000420	CmaCh14G021470	Cucurbita maxima (Rimu)	cmawgoB0315
Bhi01G000420	CmaCh06G009740	Cucurbita maxima (Rimu)	cmawgoB1017
Bhi01G000420	CmoCh06G009960	Cucurbita moschata (Rifu)	cmowgoB1013
Bhi01G000420	CmoCh14G022150	Cucurbita moschata (Rifu)	cmowgoB0303
Bhi01G000420	Lsi05G021880	Bottle gourd (USVL1VR-Ls)	lsiwgoB433
Bhi01G000420	Cp4.1LG08g00550	Cucurbita pepo (Zucchini)	cpewgoB1105
Bhi01G000420	Cp4.1LG03g15680	Cucurbita pepo (Zucchini)	cpewgoB0770
Bhi01G000420	MELO3C005973.2	Melon (DHL92) v3.6.1	medwgoB542
Bhi01G000420	Carg24162	Silver-seed gourd	carwgoB0111
Bhi01G000420	Carg17670	Silver-seed gourd	carwgoB0166
Bhi01G000420	CsaV3_3G007510	Cucumber (Chinese Long) v3	cucwgoB288
Bhi01G000420	Cla021102	Watermelon (97103) v1	wgowmB212
Bhi01G000420	Cla97C05G080320	Watermelon (97103) v2	wgowmbB191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G000420	Cucumber (Gy14) v1	cgywgoB514
Bhi01G000420	Cucumber (Gy14) v2	cgybwgoB272
Bhi01G000420	Silver-seed gourd	carwgoB1162