MELO3C006766 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006766
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	50S ribosomal protein L18
Location	chr6 : 5804132 .. 5807790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACCATTGCGCAAAGTGGATAAGGCAACCCCAACTCAACTACAAAACACTATCAAATCCCCAAGAAGAAGGAGACGAGAGAAGCAGGGCGACAATGGCTTCAACCACTGCTCCATGTTCGTTCCTGGGCACTTCCTTTCTAAGCGTATCTTATTCACAGAACATTCTCAACCGTCCCCACCTTCATTTTCCGGCAACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTCGAAGCCAAGGCTACGACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATTAGGAAGAAGGTAATTCCACCCTCTAATTTGGGTCAATTTTAAATATTGTGCTAATTCCGCGTTTCTCTTGTTCAACATTGTTCTTCTGTACCTTGAATAGCTTTAGAGATTGGCTGGAAATGGAGGGGGTCTTTTGATTTTTCTTGTAATGGATGTATCGGGGTTTCATTTTATTACCCTATGTTATGTGCTAAACAATTGTTAGTGTACTTCCGTTTGGATATTGTTTTAGTTATCTGTTTATTGTGAACTTCTAAAGGATTGCTTTGATAGCTTATCAATTCATTGATTTTTTTTTCTCTTTTTAGTTTAGAAGTTCTGGTTAGATTAGCTAATAAGTTACTTGTTTCTTAGAACATTGCCACTACTTCGATACACAAGTCATGGGTTTCTGAAGATTGAGGGAAAGAGGAAACAGAATAAAGAAATTGTTGTTTTTCATTGCAGGGAGTCAAAACTTCAAAATAAAATTAATATACTCTTCTCGGCTTCAAATGATAGTCGTGATAGCAGTAATCAAAACTTGTTTCGTGTTAGGATCTGCTAAGATTTACATTTCTCTCCTTTGGAACTCAGATGACTTGAAAGTAGATTTATTTGTTGGCGAAACCAAAATCTATAGGAAGAAGTAGCTTGTACAAAGAATAGATAGGCAACAAAAGGTTGGACACCAGAACACAAAACAAAATAAGAAAGATATCCCCCATTTTATATATATGTTAGTTAAGATATAAGCCTCACATGAGGATCCACAATTGACTGCAGTGAAAATGGTGAGATGGTGATCGCCCAAAGCTGGAGGCCCAATATGTTACTAGAACATCAACCCTTCAATTATCAATGTTGAGCAAAAAAAACATGGTTACTATATGTTCCAGCGTGAGTGTTGAATCTAATGCTACCATTCTACAAAGGAATGCGTCGTTTATCAGATCTTTTAGCATTGTAATTCTCCAGTAATGGGACAGGGTAGCATTCTGCATAGGACTTCAGAGACATTAAAAGAGCAACAAGGTAATGCTTAGTGGAGAAAACACTGTTGAAAGCTTTTCCTTGAACCTCTACCAAGTTGCCCAATTACATGCTCGAACTATTTTCTGTGCTCCACTGTTATTCACGTGGAAGATACATGCAGCATGCACAGAACAAGAGGATCATGGCACATGCACCTGCATACAATATGAATCAAGTTCATGCATCCAGTGGATGAGTAGTTTCAAATCCAAATTTTCCTTATCCATGGAACTAAGCACAGAAACTTGCCCAAGATTATTAAGGAGATCCAAATGGAAGATAAACTTCAGTCAGTCGGCCATCTTCAAGGAGATTAGCACTAGGACTTCCCACAGTTGTGGTGATTGGGCGAGATTTAGTAGGTTTAAGTTCAAATGGAAGGTTTTGATCTAAAGATTCAAGCTACTGGATAGAGTTAATTGACACTATTTCTACGAAGCAAGGATTTAGTTGAACATTAAAGAGCTCTGTTGGCCTTGATGAGAGGGAAGAGAATAAAAGTGCAAGAGGTTGGTGAGGCAGTCATTATCATTGAGGGAGCATGTAAGACTGACACTTTTTTTTTCATTACTATCGATGCGGACAAAGTTGGGAAGCATTTTTCTGAATCTTGTGGGTTGGATTTTGATTTCAGCTTTCTTGCATGTTCACTGTTTCCCTAGTTGTAGAATGGTTGTACTTAACTAGGGCAAATTGGAACAAAACACTACATCCTTGACCTGGATATGACACTTGAGAAGATAGCATTTCCATTCATGCCCTACGATCTGTCTTCAACTGAATTTTTTTTAAAATACATTTAGAATGGTTAAATAAAGTCAATAGGATTTTCAATGGGAAGTATATCTTCCTGCTCTAACTCAAAGATTTACGTTTACTTCTCTCTATTTAAACATCTGAACCTGTAGTTACACGATCAATTGAATCTTTTTAGTCTTCCTTTTTTCATATATCTGGATCCCTTTAGAACTACTTTGGTTTATAATTGTTGTCTTTATAATAGCAAATTAATCCTTGCGGGTATAGGTGGTAGATACTAAAGTACAGTTCACCTGTACAATCATCTTTTGTCTTAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCGGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATCGTGAGTCACTATAACTAAAACGTAGTTGATTGATCTACTGATGTAGATATATATGTGTATTTGTGTGTGTGTGTGTGTGTATATATATATTGGTCCTATTATTTTCCATTGGAGTCCTATAGTAATCTTTAGCTTTCATCCACCCTTTTCCAGACTTTGTTCCACTAGTTTGATGTCTATGTAGATCTTCTTACCTATACTAAATAAGATACCATCCATTAAAATCGGCCCACTAATTTGGTCAGATATTCTGAGAGATTTGATTACTGAACTTGAATACATAAATGAAACAGCAAAAGAAAAGAAAAAACTATTACTGCCAAGACCAATAGCTAGTCTTTAAAGGAACATTAAGTTTAGTTATTGTACAGAGCCTTACTTGAATATATGAGTTCTATCTGTATGTCAACAAATTAAAATTTTTAGTCTCTAAAGGCTAAATTTGAAAAAGTTTTGTCTTACTTGTCATTCTATTAACACTGCTAACCAAACCTACGACGTGACAAAGACTGATAGAATTACAAGCCCAAGTTAATGGATGAAATTAAGTTTAGAGACCAAATAGATGTCTTGATCGAAGCAGAATTCTTATTATTATGTGGAAATATGATTGTTACAGGAAGTGGCAAAGAAAGTAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCGTACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTTTTTTTCATATCTTTTAGCTTGGTATTCTGTAACAGTGCCATCATTTGAGATTATTTTTCTGTTGATTAGACGAGAGTTATAGTCGTTTGACCTGAAATTAAGAGGGAAATTGTTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGGCCAGTTTAACTAGTGTTTGCAAACATTTAGATGAACAAAATTCAAAAGGAGATGTTCTTTTAGTACAAATAAGGATAGGGGATTGGAATCACATACATCTCCATTCTTGCCACGTATTGATGTCAATTGAGTTAAATTCCTTTTGGCACAAAAAATAAAAAGTTTTCTATTTATAACCT

mRNA sequence

GAAAAACCATTGCGCAAAGTGGATAAGGCAACCCCAACTCAACTACAAAACACTATCAAATCCCCAAGAAGAAGGAGACGAGAGAAGCAGGGCGACAATGGCTTCAACCACTGCTCCATGTTCGTTCCTGGGCACTTCCTTTCTAAGCGTATCTTATTCACAGAACATTCTCAACCGTCCCCACCTTCATTTTCCGGCAACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTCGAAGCCAAGGCTACGACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCGGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATCGAAGTGGCAAAGAAAGTAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCGTACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTTTTTTTCATATCTTTTAGCTTGGTATTCTGTAACAGTGCCATCATTTGAGATTATTTTTCTGTTGATTAGACGAGAGTTATAGTCGTTTGACCTGAAATTAAGAGGGAAATTGTTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGGCCAGTTTAACTAGTGTTTGCAAACATTTAGATGAACAAAATTCAAAAGGAGATGTTCTTTTAGTACAAATAAGGATAGGGGATTGGAATCACATACATCTCCATTCTTGCCACGTATTGATGTCAATTGAGTTAAATTCCTTTTGGCACAAAAAATAAAAAGTTTTCTATTTATAACCT

Coding sequence (CDS)

ATGGCTTCAACCACTGCTCCATGTTCGTTCCTGGGCACTTCCTTTCTAAGCGTATCTTATTCACAGAACATTCTCAACCGTCCCCACCTTCATTTTCCGGCAACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTCGAAGCCAAGGCTACGACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCGGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATCGAAGTGGCAAAGAAAGTAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCGTACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA

Protein sequence

MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF*

Homology

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BLAST of MELO3C006766 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-56
Identity = 111/138 (80.43%), Postives = 117/138 (84.78%), Query Frame = 1


Query: 33  PATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of MELO3C006766 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.1e-48
Identity = 98/145 (67.59%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 28  PHLHFPATTSSSGRHSLVVEAKA--TTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKH 87
           P +  P+ + +  R SLVV AK   +T + DR ARH R+RKKV GTTERPRLSVFRSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 88  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAF 147
           LY QVIDD+K  TL + STM KS+S+ L+YSAGPT+EVA+K+GE IAKSCLEKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 148 DRGGYPYHGRVEALADAAREHGLQF 171
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

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BLAST of MELO3C006766 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.6e-34
Identity = 76/118 (64.41%), Postives = 86/118 (72.88%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD +    IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of MELO3C006766 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.6e-34
Identity = 76/118 (64.41%), Postives = 87/118 (73.73%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD +    IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of MELO3C006766 vs. Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.5e-33
Identity = 72/118 (61.02%), Postives = 83/118 (70.34%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+R+RKK+ GT ERPRL+VFRSNKH+Y Q+IDD K  T+ + ST+ K     
Sbjct: 7   RNAVRKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDKEF--- 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
            D  +   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  -DLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of MELO3C006766 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 4.7e-87
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 1


Query: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of MELO3C006766 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.4e-59
Identity = 126/168 (75.00%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 5   TAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSG--RHSLVVEAKATTRREDRAARHS 64
           +A  SFLGT+  S   SQ +  RP L    TT S      SLVVEAKATT+REDR ARH 
Sbjct: 2   SASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

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BLAST of MELO3C006766 vs. TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 5.5e-56
Identity = 121/163 (74.23%), Postives = 130/163 (79.75%), Query Frame = 1


Query: 10  FLGTS--FLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAARHSRIRKK 69
           FLG+S   LSVS     +    +  P     S      VEA+A TRREDR ARHSRIRKK
Sbjct: 15  FLGSSQNVLSVSICPKFVGTVPMQRPPQRQPS----FAVEARAKTRREDRLARHSRIRKK 74

Query: 70  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKV 129
           VEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAAVSTMQK +SE  DYS+GPTIEVAK+V
Sbjct: 75  VEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYSSGPTIEVAKRV 134

Query: 130 GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           GE IAKSCLEKGITKVAFDRGGYPYHGRVEALA+AAREHGLQF
Sbjct: 135 GEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

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BLAST of MELO3C006766 vs. TrEMBL
Match: A0A068VFP3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003540001 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-55
Identity = 117/168 (69.64%), Postives = 133/168 (79.17%), Query Frame = 1


Query: 3   STTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAARHS 62
           S  A     G  F +  ++   L  P L   + ++    ++L +EAKA TRR DR ARHS
Sbjct: 2   SCNATSLSFGLGFRTPKFASPFLPSP-LRLSSFSTQWQPNALSIEAKAGTRRVDRTARHS 61

Query: 63  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 122
           RIRKKVEGT ERPRLSVFRSNKHLYVQVIDDSKMHTLA+ STMQK IS+ L+YS+ PTI+
Sbjct: 62  RIRKKVEGTPERPRLSVFRSNKHLYVQVIDDSKMHTLASASTMQKPISDDLNYSSAPTID 121

Query: 123 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVG+AIAKSCLEKGITKVAFDRGGYPYHGR+EALADAAREHGLQF
Sbjct: 122 VAKKVGKAIAKSCLEKGITKVAFDRGGYPYHGRIEALADAAREHGLQF 168

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BLAST of MELO3C006766 vs. TrEMBL
Match: M1A0E2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004682 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-55
Identity = 110/127 (86.61%), Postives = 115/127 (90.55%), Query Frame = 1


Query: 44  LVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVS 103
           L VEAKA TRREDR ARH RIRKKVEGT ERPR+ VFRSNKH+YVQVIDDSKMHTLA+ S
Sbjct: 36  LTVEAKAKTRREDRTARHIRIRKKVEGTPERPRMCVFRSNKHIYVQVIDDSKMHTLASAS 95

Query: 104 TMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAA 163
           TMQK ISE  DYSAGPT EVAKKVGE IAK+CLEKGITKVAFDRGGYPYHGR+EALADAA
Sbjct: 96  TMQKPISEEFDYSAGPTAEVAKKVGEVIAKACLEKGITKVAFDRGGYPYHGRIEALADAA 155

Query: 164 REHGLQF 171
           REHGLQF
Sbjct: 156 REHGLQF 162

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BLAST of MELO3C006766 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 220.3 bits (560), Expect = 9.0e-58
Identity = 111/138 (80.43%), Postives = 117/138 (84.78%), Query Frame = 1


Query: 33  PATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of MELO3C006766 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-16
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1


Query: 27  RPHLHFPAT-TSSSGRHSLVVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKH 86
           +P+  FP   T+ S     V+EA+  TR E    R+ R RKK  GT  +PRLSVF S+K 
Sbjct: 23  KPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQ 82

Query: 87  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKV-A 146
           LY  ++DD     L   ST+QKSI      +    IE AK+VGE + K+ ++  I ++ +
Sbjct: 83  LYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKRVGEELIKASIDLKINEISS 142

Query: 147 FDRGGYPYHGRVEALADAAREHG 168
           +DR G     R++A   A  +HG
Sbjct: 143 YDRNGNKRGERMQAFEIAIAQHG 162

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BLAST of MELO3C006766 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = 1


Query: 118 GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

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BLAST of MELO3C006766 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 336.7 bits (862), Expect = 2.5e-89
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1


Query: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60
           MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 6.7e-87
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 1


Query: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59
Identity = 127/168 (75.60%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 5   TAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSG--RHSLVVEAKATTRREDRAARHS 64
           +A  SFLGT+  S   SQ +  RP L    TT S      SLVVEAKATT+REDR ARH 
Sbjct: 2   SASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +SE  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSEEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: gi|596288596|ref|XP_007225963.1| (hypothetical protein PRUPE_ppa012509mg [Prunus persica])

HSP 1 Score: 236.5 bits (602), Expect = 3.5e-59
Identity = 126/168 (75.00%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 5   TAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSG--RHSLVVEAKATTRREDRAARHS 64
           +A  SFLGT+  S   SQ +  RP L    TT S      SLVVEAKATT+REDR ARH 
Sbjct: 2   SASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of MELO3C006766 vs. NCBI nr
Match: gi|694359441|ref|XP_009359828.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 230.3 bits (586), Expect = 2.5e-57
Identity = 120/162 (74.07%), Postives = 134/162 (82.72%), Query Frame = 1


Query: 11  LGTSFLSVSYSQNILNRPHLHFPATTSSSG--RHSLVVEAKATTRREDRAARHSRIRKKV 70
           +  S   ++ SQ +  RP L   A T S      SLVVEAKATT+REDR ARH+RIRKKV
Sbjct: 1   MSASLSFLASSQQLWLRPQLVGVAATPSPRPQSRSLVVEAKATTKREDRTARHTRIRKKV 60

Query: 71  EGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVG 130
           EGT ERPRL+VFRS+KH+YVQVIDDSKMHTLA+ STMQK ISE  DY++GPTIEVAKKVG
Sbjct: 61  EGTPERPRLAVFRSHKHIYVQVIDDSKMHTLASASTMQKPISEEFDYTSGPTIEVAKKVG 120

Query: 131 EAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           E IAKSCLEKGI+KVAFDRGGYPYHGRV+ALADAAREHGLQF
Sbjct: 121 EVIAKSCLEKGISKVAFDRGGYPYHGRVQALADAAREHGLQF 162

The following BLAST results are available for this feature:

BLAST of MELO3C006766 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	1.6e-56	80.43	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	2.1e-48	67.59	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	6.6e-34	64.41	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	6.6e-34	64.41	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOSW	5.5e-33	61.02	50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1	[more]

BLAST of MELO3C006766 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A4_CUCSA	4.7e-87	97.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1	[more]
M5XM31_PRUPE	2.4e-59	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1	[more]
A0A058ZTZ3_EUCGR	5.5e-56	74.23	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1	[more]
A0A068VFP3_COFCA	1.6e-55	69.64	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003540001 PE=3 SV=1	[more]
M1A0E2_SOLTU	3.6e-55	86.61	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004682 PE=3 SV=1	[more]

BLAST of MELO3C006766 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	9.0e-58	80.43	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	1.0e-16	37.76	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	1.6e-09	75.68	structural constituent of ribosome	[more]

BLAST of MELO3C006766 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077079\|ref\|XP_008439021.1\|	2.5e-89	100.00	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|449459812\|ref\|XP_004147640.1\|	6.7e-87	97.06	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus]	[more]
gi\|645231256\|ref\|XP_008222310.1\|	1.5e-59	75.60	PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]	[more]
gi\|596288596\|ref\|XP_007225963.1\|	3.5e-59	75.00	hypothetical protein PRUPE_ppa012509mg [Prunus persica]	[more]
gi\|694359441\|ref\|XP_009359828.1\|	2.5e-57	74.07	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004389	Ribosomal_L18_bac-type
IPR005484	Ribosomal_L18
IPR004389	Ribosomal_L18_bac-type
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048513	animal organ development
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0048653	anther development
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0065007	biological regulation
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0071669	plant-type cell wall organization or biogenesis
biological_process	GO:0040007	growth
biological_process	GO:0016043	cellular component organization
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008097	5S rRNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45075	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006766T1	MELO3C006766T1	mRNA
MELO3C006766T2	MELO3C006766T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45075	MU45075	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 63..148 score: 1.2
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 67..148 score: 2.6
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 64..148 score: 8.4
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 47..148 score: 1.1
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 53..146 score: 8.07

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006766	Csa3G171790	Cucumber (Chinese Long) v2	cumeB236
MELO3C006766	Cla021845	Watermelon (97103) v1	mewmB461
MELO3C006766	ClCG05G007000	Watermelon (Charleston Gray)	mewcgB427
MELO3C006766	Cla97C05G088670	Watermelon (97103) v2	mewmbB434
MELO3C006766	Bhi01G000838	Wax gourd	mewgoB529
MELO3C006766	CSPI03G15510	Wild cucumber (PI 183967)	cpimeB230
MELO3C006766	Cucsa.252040	Cucumber (Gy14) v1	cgymeB439
MELO3C006766	CmaCh14G015460	Cucurbita maxima (Rimu)	cmameB242
MELO3C006766	CmaCh06G015960	Cucurbita maxima (Rimu)	cmameB763
MELO3C006766	CmoCh06G015910	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006766	CmoCh14G015820	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006766	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	lsimeB379
MELO3C006766	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006766	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006766	CsGy3G015560	Cucumber (Gy14) v2	cgybmeB200
MELO3C006766	Carg15519	Silver-seed gourd	carmeB0693
MELO3C006766	Carg19585	Silver-seed gourd	carmeB0280
MELO3C006766	CsaV3_3G015690	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None