Cucsa.252040 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.252040
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	50S ribosomal protein L18
Location	scaffold02229 : 1053668 .. 1057085 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTAATTCCACCCTCTAATTTGGGTCAATTTTAAATGTTGTGCTAATTCCTCCTTTCTCTTGTTCAACATTGTTCTTCTCTACCTTGAATACTTTTAGAGGTTGGCTGGAAATGGAGGGGGTCTTTTGATTATTCTTGCAATGGATGTATCGGGGTTTCATTTTATCACCCTATGTTATGTGCTAAACAATTGTTAGTGTACTTCCCTTTGGATATTGTTTCGTTTTTGTTTTTTTTTTTTTTTGATAGCTTATCAATTCATTGATTTTTTTTTTCTTCTCTTTTTAGTTTAGAAGTTCTGGTTAGACTACCTAATAGGTTACTTCTTTCTTAGAACATTGCCACTACTTCGTTACACAAGTTATGGGTTTCTGAAGATTGAGGGAAAAAGGGAACAGAATAAAGAAATTGTTATTTGTCATTGCTGCGAGTCAAAACTTCAAAATAGAATTAATATATTTTCAAACGATAGTCTTCATAGCTGTAATCAAAACTTGTTTCGTGATAGGATCTGCTAAGATTTACATTTCTCTCCTTTGGAACTCAGATGACTTGAAAGTAGATTTATTTGTTGGAGAAACCAAAATCCTTAGGAAGAAGTAACTTGTACAAGGAATAGACAGGCAACAGGAGGTTGGACCCCAGAACACAAAATACGAAAGATATCCCCATTTTATATGTATGTTAGCTAAGAAATAAGCCTCATATGTGGAACCACAACTAATTACAACGGAAATGGTGAGATGGTGATCGCCCAGAGCTGGAGGCCCAATATGTTACTAGAACACCAACCCTTCAATTATCAATGTTGAGCAAAAAAAACAGGGTTACTATATGTTCCAGCGTGAGTGTTGAATCTAATGCTACCATTGTACAAAGGAATATGTCCTTTTTCGGATCTTTTAGCACTGTAATTCTCCAGTAATGGGACAGGGTAGCATTATGCATAGGACTTCAGAGACATGAAAAGAGCAACAAGGTAATGCTCAGTGGAGAAAACATTGTTGAAAGCATTTCCTTGAACCCTACCAAGTTACCCAATTATATGCTCGAACTATATTCTGTGTTCCACTGTTATTCATGTGGAAGGTACGTGCAGCATGCACAGAACAGGAGGATCATGGCACATGCACCTGCATACAATATGAATCAAGTTCATGCATCCAGTGGATGACTAGTTTCAAATCTAAATTTTCCTTATCCATGGAACTAAGCACAGAAACTTGCCCAATATTACTAAGGAGATCCAAATGGAAGATAAACTTCAGTCAGTCAGCCATCTTCAAGGAAATTTGCACTAGGACTTCCTACGGTTGTGGTGATTGTGTGAGCTTTAGTAGGTTTAAGTTCAAATGGAAGGTTTTGTTCTAAAGATTCAAGCTACTGGATAGAGTTAATTGACACTATTTCTATGAAGCAAGGATTTAGTTGAACATTTAGAGAGCTCTGTTGACCTTGATGAGAGGGAAGAGAATAAGAGAGCCAGAGATTGGTGAATCAGTCATTATCATTGAGGGAGCATGTGAGACTGACACTTTTTTTTCATTACTATTGATGCGGACAATGTTGGGAAGCATTTTTCTGAATCTTGTGGGTTGGATTTTGATTTCAGCTTTCTTGCATGTTCACTGTATCCCTAGTTATAGAATCTTGGTATTGATGGTTTTGGAAGGCTGACTAAGCGAGGGAGGTTGCTTAGGTTGTACTTTACTAGGGCAAATCGGAACAAAACACTACATGCTTGACCTGCATATGACACTTGGGACGATAGCATTTCCATTCTGCCATAAGATCTGTGTTCAACTGAATTTTTTTAAAATACATTTAGAATGGTGAAATAAAGTTAATAGGATTTTTAATGGGAAGTATATCCTCCCGCTCTAACTCAAAGATTTATGGATAATTCTCTTTAATTAAACATCTGAACGTAGTACATGATCAGTTGAATCTTTTTAATCTTCCTTTTTTCATACATCTGGATCCCTTCAGAACTGTTCTGGTTTACAATTGTTGTCTTTATAATAGCAAATTGATCCTTGCGGGTATAGATGGTAGATACTAAAGTACAGTTCACCTGTACAATCATCTTTTGTCTTAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGTGAGTCACTTAACTAAGAATTAGTTGATTGATCTACTGATGTAGATATATATGTGTATGCGTGTGCAGATATATATATATATATATATTGGTCCTATGGTAATCTTTAGCTTTCATCCACCCTTTTCCAAACTTTGTTCCACTGGTTTGATGTCTATGTAGATCTTCATACCTCTACTAAATAAGAGAGCATCCATTAATTTGGTCAGACATCCTGAGAGATTTGATTACTGAACTTGAATACATAAATGAAACAGCAAAAGAAAAGAAAAACAAAACTATAAATGCCAAGACCAATAGCTAGTCTTTAAAGGAGCATTAAGTTTAGTTATTGTACAAAGCCTTACTTGAATAGATGAGTTCTATCTGTATGTCAACAAATTAAACTTTTTAGTCTCTAAAGGCTAAATTTGAAAAAGTTTGTCTTACTTGTCAGTCATTCTATTAACACTGCTAATCAACCTAAGACGTGACAAAGACTGGATAGAATTACAAGCCCAAGTTAAAGGATGAGATTAAATTTAGAGACCAAGTAGATGTCTTGATCGAAGCAGAATTCTTATTATTATGTGGATAATATGATTGTTACAGGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGC

mRNA sequence

GCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGC

Coding sequence (CDS)

ATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA

Protein sequence

MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF*

Homology

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BLAST of Cucsa.252040 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.7e-56
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 33  PPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKK+GE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of Cucsa.252040 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-48
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = 1


Query: 28  PHLHFPPTTSSSGRHSLVVEAKA--TTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKH 87
           P +  P  + +  R SLVV AK   +T + DR ARH R+RKKV GTTERPRLSVFRSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 88  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAF 147
           LY QVIDD+K  TL + STM KS+S+ L+YSAGPT+EVA+KIGE IAKSCLEKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 148 DRGGYPYHGRVEALADAAREHGLQF 171
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

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BLAST of Cucsa.252040 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-34
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 1


Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD +    IE AKK+GE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of Cucsa.252040 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.6e-34
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD +    IE AKK+GE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of Cucsa.252040 vs. Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-33
Identity = 71/118 (60.17%), Postives = 85/118 (72.03%), Query Frame = 1


Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+R+RKK+ GT ERPRL+VFRSNKH+Y Q+IDD K  T+ + ST+ K     
Sbjct: 7   RNAVRKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDKEF--- 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
            D  +   IE AKK+GE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  -DLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of Cucsa.252040 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 5.9e-90
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Cucsa.252040 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58
Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   TAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSG--RHSLVVEAKATTRREDRTARHS 64
           +A  SFL T+   ++ SQ +  RP L    TT S      SLVVEAKATT+REDRTARH 
Sbjct: 2   SASISFLGTA---IASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

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BLAST of Cucsa.252040 vs. TrEMBL
Match: A0A0V0H236_SOLCH (Putative 50S ribosomal protein L18, chloroplastic-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 44  LVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVS 103
           L VEAKA TRREDRTARH RIRKKVEGT ERPR+ VFRSNKH+YVQVIDDSKMHTLA+ S
Sbjct: 36  LTVEAKAKTRREDRTARHIRIRKKVEGTPERPRMCVFRSNKHIYVQVIDDSKMHTLASAS 95

Query: 104 TMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAA 163
           TMQK ISE  DYSAGPT EVAKK+GE IAK+CLEKGITKVAFDRGGYPYHGR+EALADAA
Sbjct: 96  TMQKPISEEFDYSAGPTAEVAKKVGEVIAKACLEKGITKVAFDRGGYPYHGRIEALADAA 155

Query: 164 REHGLQF 171
           REHGLQF
Sbjct: 156 REHGLQF 162

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BLAST of Cucsa.252040 vs. TrEMBL
Match: K4DHR2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 1


Query: 44  LVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVS 103
           L VEAKA TRREDRTARH RIRKKVEGT ERPR+ VFRSNKH+YVQVIDDSKMHTLA+ S
Sbjct: 36  LTVEAKAKTRREDRTARHIRIRKKVEGTPERPRMCVFRSNKHIYVQVIDDSKMHTLASAS 95

Query: 104 TMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAA 163
           TMQK ISE  DYSAGPT EVAKK+GE IAK+CLEKGITKVAFDRGGYPYHGR+EALADAA
Sbjct: 96  TMQKPISEEFDYSAGPTAEVAKKVGEVIAKACLEKGITKVAFDRGGYPYHGRIEALADAA 155

Query: 164 REHGLQF 171
           REHGLQF
Sbjct: 156 REHGLQF 162

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BLAST of Cucsa.252040 vs. TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 116/155 (74.84%), Postives = 126/155 (81.29%), Query Frame = 1


Query: 16  LTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERP 75
           L+VS     +    +  PP    S      VEA+A TRREDR ARHSRIRKKVEGT ERP
Sbjct: 23  LSVSICPKFVGTVPMQRPPQRQPS----FAVEARAKTRREDRLARHSRIRKKVEGTPERP 82

Query: 76  RLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSC 135
           RL VFRSNKHLYVQVIDD+KMHTLAAVSTMQK +SE  DYS+GPTIEVAK++GE IAKSC
Sbjct: 83  RLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYSSGPTIEVAKRVGEIIAKSC 142

Query: 136 LEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LEKGITKVAFDRGGYPYHGRVEALA+AAREHGLQF
Sbjct: 143 LEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

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BLAST of Cucsa.252040 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-57
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 1


Query: 33  PPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKK+GE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of Cucsa.252040 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 1


Query: 13  TSFLTVSYS-QNILN---RPHLHFP-PTTSSSGRHSLVVEAKATTRREDRTARHSRIRKK 72
           TS  TV +   +IL    +P+  FP   T+ S     V+EA+  TR E    R+ R RKK
Sbjct: 5   TSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKK 64

Query: 73  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKI 132
             GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      +    IE AK++
Sbjct: 65  FTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKRV 124

Query: 133 GEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHG 168
           GE + K+ ++  I ++ ++DR G     R++A   A  +HG
Sbjct: 125 GEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHG 162

[Close]

BLAST of Cucsa.252040 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 118 GPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           G TIE+AKK+GE I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

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BLAST of Cucsa.252040 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 338.2 bits (866), Expect = 8.4e-90
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of Cucsa.252040 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 328.6 bits (841), Expect = 6.7e-87
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 1


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of Cucsa.252040 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 235.3 bits (599), Expect = 7.7e-59
Identity = 125/168 (74.40%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   TAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSG--RHSLVVEAKATTRREDRTARHS 64
           +A  SFL T+   ++ SQ +  RP L    TT S      SLVVEAKATT+REDRTARH 
Sbjct: 2   SASISFLGTA---IASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +SE  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSEEFDYTAGPTIE 121

Query: 125 VAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of Cucsa.252040 vs. NCBI nr
Match: gi|596288596|ref|XP_007225963.1| (hypothetical protein PRUPE_ppa012509mg [Prunus persica])

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   TAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSG--RHSLVVEAKATTRREDRTARHS 64
           +A  SFL T+   ++ SQ +  RP L    TT S      SLVVEAKATT+REDRTARH 
Sbjct: 2   SASISFLGTA---IASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of Cucsa.252040 vs. NCBI nr
Match: gi|694359441|ref|XP_009359828.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 229.6 bits (584), Expect = 4.2e-57
Identity = 119/162 (73.46%), Postives = 134/162 (82.72%), Query Frame = 1


Query: 11  LRTSFLTVSYSQNILNRPHLHFPPTTSSSG--RHSLVVEAKATTRREDRTARHSRIRKKV 70
           +  S   ++ SQ +  RP L     T S      SLVVEAKATT+REDRTARH+RIRKKV
Sbjct: 1   MSASLSFLASSQQLWLRPQLVGVAATPSPRPQSRSLVVEAKATTKREDRTARHTRIRKKV 60

Query: 71  EGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIG 130
           EGT ERPRL+VFRS+KH+YVQVIDDSKMHTLA+ STMQK ISE  DY++GPTIEVAKK+G
Sbjct: 61  EGTPERPRLAVFRSHKHIYVQVIDDSKMHTLASASTMQKPISEEFDYTSGPTIEVAKKVG 120

Query: 131 EAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           E IAKSCLEKGI+KVAFDRGGYPYHGRV+ALADAAREHGLQF
Sbjct: 121 EVIAKSCLEKGISKVAFDRGGYPYHGRVQALADAAREHGLQF 162

The following BLAST results are available for this feature:

BLAST of Cucsa.252040 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	2.7e-56	79.71	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	2.7e-48	68.28	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	8.6e-34	63.56	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	8.6e-34	63.56	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOSW	7.2e-33	60.17	50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1	[more]

BLAST of Cucsa.252040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A4_CUCSA	5.9e-90	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1	[more]
M5XM31_PRUPE	1.2e-58	73.81	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1	[more]
A0A0V0H236_SOLCH	1.2e-55	86.61	Putative 50S ribosomal protein L18, chloroplastic-like OS=Solanum chacoense PE=3...	[more]
K4DHR2_SOLLC	1.2e-55	86.61	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A058ZTZ3_EUCGR	1.2e-55	74.84	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1	[more]

BLAST of Cucsa.252040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	1.5e-57	79.71	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	1.3e-16	36.65	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	2.0e-09	72.97	structural constituent of ribosome	[more]

BLAST of Cucsa.252040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459812\|ref\|XP_004147640.1\|	8.4e-90	100.00	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus]	[more]
gi\|659077079\|ref\|XP_008439021.1\|	6.7e-87	97.06	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|645231256\|ref\|XP_008222310.1\|	7.7e-59	74.40	PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]	[more]
gi\|596288596\|ref\|XP_007225963.1\|	1.7e-58	73.81	hypothetical protein PRUPE_ppa012509mg [Prunus persica]	[more]
gi\|694359441\|ref\|XP_009359828.1\|	4.2e-57	73.46	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004389	Ribosomal_L18_bac-type
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.252040.1	Cucsa.252040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 27
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 54..170 score: 3.9
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..170 score: 2.1
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 70..170 score: 5.6
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 47..170 score: 1.5
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 53..168 score: 1.88

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.252040	Cla021845	Watermelon (97103) v1	cgywmB479
Cucsa.252040	Csa3G171790	Cucumber (Chinese Long) v2	cgycuB366
Cucsa.252040	MELO3C006766	Melon (DHL92) v3.5.1	cgymeB439
Cucsa.252040	ClCG05G007000	Watermelon (Charleston Gray)	cgywcgB451
Cucsa.252040	CSPI03G15510	Wild cucumber (PI 183967)	cgycpiB383
Cucsa.252040	CmaCh14G015460	Cucurbita maxima (Rimu)	cgycmaB0709
Cucsa.252040	CmaCh06G015960	Cucurbita maxima (Rimu)	cgycmaB0727
Cucsa.252040	CmoCh06G015910	Cucurbita moschata (Rifu)	cgycmoB0718
Cucsa.252040	CmoCh14G015820	Cucurbita moschata (Rifu)	cgycmoB0700
Cucsa.252040	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	cgylsiB416
Cucsa.252040	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cgycpeB0682
Cucsa.252040	MELO3C006766.2	Melon (DHL92) v3.6.1	cgymedB432
Cucsa.252040	CsaV3_3G015690	Cucumber (Chinese Long) v3	cgycucB387
Cucsa.252040	Cla97C05G088670	Watermelon (97103) v2	cgywmbB452
Cucsa.252040	Bhi01G000838	Wax gourd	cgywgoB522
Cucsa.252040	Carg15519	Silver-seed gourd	carcgyB0776
Cucsa.252040	Carg19585	Silver-seed gourd	carcgyB0329

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.252040	Cucurbita pepo (Zucchini)	cgycpeB0687