CmoCh14G015820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G015820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L18
Location	Cmo_Chr14 : 12587118 .. 12590472 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAATCGGCTGCACATATGGATAAGGCACCGCAACTGAAGAAGGAAAAGGAAAACGAACCAGAAGCCGTCGGAAGAAGAAGAAGAAGAGGAGGAAGAGAGGAGGAGGACGACAATGTCTTCAGCCGCTGCTTCCTTATCGTTCCTTGGCAGTTCCTTTCTCGGCGGTGCTTCCTCACAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGGCTACGACCAGACGAGAGGATCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTAATCGCAGACTTCATTTCCCCAATTTAAAACTTAGTGCCTTACCTCCTTCGCGTCCATTGCTGCGCTAATCGGGCGATTCTCTTGATCAACTTTGTTATCTGCCTCAAATAATTTCACTGGAAATGGTGGTAGGTTATTTGAATAATTCTTGCTATGTACGCATCTGGCTTTCATCTTATTACCCTATCTTATCTGGATATTGTTTCATTTTAGGTATAAATATTGTGAACCTCCTAAGGATTGATTTGATAGTTCATCAATTCATCGTTTCTTGAGTTTAGAAGTTCTGGTTCTACTAGCTAAGAGGTGTGCTTGTTTCTTAGAAGAAATTGATGCTTCCGTGTGGATATTGTTTCACTTTAGCTTAGAGGTGCATTTGGCCAATACATGAGTCCTGGATTTCTGATGATTAATAGCGTAACAGCTCAAGTCCGTCCTCTTTTCGATTTTCCTTTCAAGCTTCTCCTTTCAGTTTTTAAAATGCATATGCTAGGGGAGGTTTTCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCTAACAGATATGGGATCTCACAATTCACCTCCCTTCAGGGCCTAGTGTCCTCGCTGGCACACCGCTCAGTGTCCACCCCTTTGGGGCTCAACGTCCTCACTGTCACATTGCCTAGTGCCAGGCTTTAATACCATTTGTAACAGCCAAAGTCCACCGCTAGCGGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTAAAATGCGTCTGGTAGGGAGAGGTTTCCACACGTTTATAAAGAATGTTTTGTTTCCCCTTTCCAACCGATGTGAGATCTCACGTGCAAGGACTAGACTTCCCACCGTTGTAGGAACTGGATGAGAGTTAGGAGGTTTAGTTTAAATCAGACGCTTTGATTTATCAAGCTACTGGATAGAGTTTATTCACACTATTTTCTATGAAGCAAGGATTTAGTTGAACATTTAAGGAGCAATATTGGCGTTGATGAGAGGCAGGAGAATAAGAGAACAAGAGATTGGTGAGGCAGTCATCGTCAATGGGGGAGCTTGTGAGATTGACTCTTTTCTTTTCTCATTCCTATTGATACATACAAGGTTGGGAAGCGTTTTTCTCTCTCATGGATTGGAATTTGATTGCAGCTTTTGTAACAACCCGAGCCCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTCCGGACTTTCCCTCAAGGTTTTTAAAACGCATCTACTAGGGAAAGATTTCCACACCCTTATAAAGGATGCTTCGTTCCCCTCTCTAACTGACGTGGAATCTCACCGCTTTCTTGCATGTTAGCTTTATCTTTAGTTGTTGAATCTCGTTGTATTGGGAGATTGCTTAGGCTACACTTAGCGAGGGCAAACTCCAAACAAAACACTACGCATCCTCGACCTGCATATGACGCTTGGGAAGGTGACATTCAATTCATGCCATAGGACCTCTCTTCAACTCGAAATCTTTTAAATTCATCTATAACGGTTAAACAAAGATCTACGAACATTTTTAATTTTCATTCTTGTAAACATCTGGATCCTTTCAGCTCTGGTTCACAGTTGTTATCTTTACTATAGCAAATTGATTCTTGCTGATATACATGTAGATAATAAAGTATAGTTTACCCATTCAATCATCTTGTGCCTCAGGTTGAAGGAACATCAGAGAGGCCAAGGTTATCTGTGTTCCGTTCGAACAAGCATTTGTACGTACAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGTGAGTTCACTATAACTAAGAATCAAATGTGATTGATACACCGATAATCTTTTGTTGGGTTCGATTATTTCCTTTGCGGGCTTCTCTCAAGGTTTTTAAAACGTGTTTGCTAGGAAGAGGTTTCCACATCCTTATAAAAGATATTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAGCGTCCTCGCTGGCACTCGTTCTATTCTCCAATCGATGTGGAACCCCCCCAATTCACCTCATTTGGGGCTTAGCCCTCCGCTTGCGCATCGCCGTTTGACTCTGATACCATTTGTAATGGTCTAAGCCCACCACTAGCAGATATTGTCCTCTTTGATCTTTCCCTTTCGGGCTTCCTCTTAAGGTTTATAAAACGCGTCTACTAGAGAGAGGTTTCCACACACTTATAAAGAATGTTTCGTTCTTCTCTCCAACCGAGGTAGGATCTCACAGAATGTCTCTGCATGGGCATAGAGTTTTAGTTATTGTACATAGTTTACTTGAATAAGTTCTTCATACATGCCCTCAAGTTCTAAAAAGTTATCAAACAAATTATAAATTTAATTTTCGTGTCATTCTATGCATTCTCTTACATTAACACGGATGATTAAATAGCAACATGGCCGATAATTTAAATAAATATTGACTGATTTAACACGTCACATGGTCGTTTAAGGCTACATAGAAGGCTACATAGAATTACAAGGGTAAGTTTAAGGCATATTATATGATTATATGTGGATAATATGGTTACAGGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGAAAATCCCTCTGTTTTTCTGTATCTTCTTGCTTGGTATGCTGTAACATTGCCATCAGATGACCTTGTTGATTCGAATGAGAATTGTAGTGGTTCAGCCTGAAATTAAGAAGGAATTTGTTTCTTGATTCATCTCTTCTTCGGAAATCAAATCAATGTCTTTGGACATTAAATTAAAGCTCGAGAAGTCATTCCAAACCGACTCTAAGCTTGTCCCATGTTTAATGGTTGAATAGTTTGATACTGAAAAGAGTATGCAAACCACATTTAGTTTAA

mRNA sequence

TATTAATCGGCTGCACATATGGATAAGGCACCGCAACTGAAGAAGGAAAAGGAAAACGAACCAGAAGCCGTCGGAAGAAGAAGAAGAAGAGGAGGAAGAGAGGAGGAGGACGACAATGTCTTCAGCCGCTGCTTCCTTATCGTTCCTTGGCAGTTCCTTTCTCGGCGGTGCTTCCTCACAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGGCTACGACCAGACGAGAGGATCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTATCTGTGTTCCGTTCGAACAAGCATTTGTACGTACAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGAAAATCCCTCTGTTTTTCTGTATCTTCTTGCTTGGTATGCTGTAACATTGCCATCAGATGACCTTGTTGATTCGAATGAGAATTGTAGTGGTTCAGCCTGAAATTAAGAAGGAATTTGTTTCTTGATTCATCTCTTCTTCGGAAATCAAATCAATGTCTTTGGACATTAAATTAAAGCTCGAGAAGTCATTCCAAACCGACTCTAAGCTTGTCCCATGTTTAATGGTTGAATAGTTTGATACTGAAAAGAGTATGCAAACCACATTTAGTTTAA

Coding sequence (CDS)

ATGTCTTCAGCCGCTGCTTCCTTATCGTTCCTTGGCAGTTCCTTTCTCGGCGGTGCTTCCTCACAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGGCTACGACCAGACGAGAGGATCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTATCTGTGTTCCGTTCGAACAAGCATTTGTACGTACAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGA

Homology

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BLAST of CmoCh14G015820 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-53
Identity = 114/158 (72.15%), Postives = 127/158 (80.38%), Query Frame = 1


Query: 13  SSFLGGASSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTS 72
           S+FLG      L++R     P ++SS    S+ V+AK  T  EDR ARHSRIRKKV GT+
Sbjct: 17  SAFLGNG----LQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTT 76

Query: 73  ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIA 132
           ERPRL VFRSNKHLYVQVIDD+KMHTLA+ ST QK ISE  DYT+GPTIEVAKKVGE IA
Sbjct: 77  ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIA 136

Query: 133 KSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           KSCLEKGI+KVAFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 137 KSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170

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BLAST of CmoCh14G015820 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.5e-43
Identity = 92/143 (64.34%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 30  LNFPATTSSSGQHSLAVQAKA--TTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLY 89
           ++ P+ + +  + SL V AK   +T + DR ARH R+RKKV GT+ERPRLSVFRSNKHLY
Sbjct: 28  ISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLY 87

Query: 90  VQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDR 149
            QVIDD+K  TL + STM KS+S+ L+Y+AGPT+EVA+K+GE IAKSCLEKGI+KV FDR
Sbjct: 88  AQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDR 147

Query: 150 GGYPYHGRVEALADAAREHGLQF 171
           GG+ YHGR++ALADAARE+GL F
Sbjct: 148 GGFLYHGRIKALADAARENGLDF 170

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BLAST of CmoCh14G015820 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-33
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 53  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD T    IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CmoCh14G015820 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-33
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 53  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD T    IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CmoCh14G015820 vs. Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.1e-32
Identity = 72/118 (61.02%), Postives = 87/118 (73.73%), Query Frame = 1


Query: 53  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R+ RH+R+RKK+ GT+ERPRL+VFRSNKH+Y Q+IDD K  T+ + ST+ K     
Sbjct: 7   RNAVRKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDKEF--- 66

Query: 113 LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
            D  +   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  -DLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CmoCh14G015820 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.3e-70
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 1   MSSAAASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           M+S  A  SFL +SFL  + SQN+ NR  L+FP TTSSSG+HSL V+AKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CmoCh14G015820 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 125/168 (74.40%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 5   AASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSG--QHSLAVQAKATTRREDRQARHS 64
           +AS+SFLG++    ASSQ L  R +L    TT S      SL V+AKATT+REDR ARH 
Sbjct: 2   SASISFLGTAI---ASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYTAGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

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BLAST of CmoCh14G015820 vs. TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 124/174 (71.26%), Postives = 140/174 (80.46%), Query Frame = 1


Query: 3   SAAASLSFLGSS-FLGGASSQNLRN-----RLQLNFPATTSSSGQHSLAVQAKATTRRED 62
           +A+ S+SFL  + FLG  SSQN+ +     +     P       Q S AV+A+A TRRED
Sbjct: 2   AASTSISFLSQNPFLG--SSQNVLSVSICPKFVGTVPMQRPPQRQPSFAVEARAKTRRED 61

Query: 63  RQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYT 122
           R ARHSRIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAAVSTMQK +SE  DY+
Sbjct: 62  RLARHSRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYS 121

Query: 123 AGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           +GPTIEVAK+VGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALA+AAREHGLQF
Sbjct: 122 SGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

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BLAST of CmoCh14G015820 vs. TrEMBL
Match: A0A0K9QQ60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 120/169 (71.01%), Postives = 139/169 (82.25%), Query Frame = 1


Query: 3   SAAASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSGQHSLA-VQAKATTRREDRQARH 62
           +AA SLSF  S+ L  +SS +++   QL+ P    +    +L  +QAKA TRREDR ARH
Sbjct: 2   AAATSLSFFHST-LASSSSSSVQ---QLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARH 61

Query: 63  SRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTI 122
            RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DY+AGPT+
Sbjct: 62  VRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTV 121

Query: 123 EVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           EVA+K+GE IAKSCLEKGI+KVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 122 EVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

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BLAST of CmoCh14G015820 vs. TrEMBL
Match: A0A059D442_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.8e-52
Identity = 121/174 (69.54%), Postives = 138/174 (79.31%), Query Frame = 1


Query: 3   SAAASLSFLGSS-FLGGASSQNLRN-----RLQLNFPATTSSSGQHSLAVQAKATTRRED 62
           +A+ S+SFL  + FLG  SSQN+ +     +     P       Q   AV+A+  TRRED
Sbjct: 2   AASTSISFLSQNPFLG--SSQNVLSVSICPKFVGTVPMQRPPQRQPPFAVEARVKTRRED 61

Query: 63  RQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYT 122
           R ARHSRIRKKV+GT ERPRL VFRSNKHLYVQVIDD+KMHTLAAVSTMQK +SE  DY+
Sbjct: 62  RLARHSRIRKKVQGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYS 121

Query: 123 AGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           +GPTIEVAK+VGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALA+AAREHGLQF
Sbjct: 122 SGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

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BLAST of CmoCh14G015820 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 210.7 bits (535), Expect = 7.1e-55
Identity = 114/158 (72.15%), Postives = 127/158 (80.38%), Query Frame = 1


Query: 13  SSFLGGASSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTS 72
           S+FLG      L++R     P ++SS    S+ V+AK  T  EDR ARHSRIRKKV GT+
Sbjct: 17  SAFLGNG----LQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTT 76

Query: 73  ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIA 132
           ERPRL VFRSNKHLYVQVIDD+KMHTLA+ ST QK ISE  DYT+GPTIEVAKKVGE IA
Sbjct: 77  ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIA 136

Query: 133 KSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           KSCLEKGI+KVAFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 137 KSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170

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BLAST of CmoCh14G015820 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-14
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 1


Query: 36  TSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSK 95
           T+ S      ++A+  TR E  + R+ R RKK  GT  +PRLSVF S+K LY  ++DD  
Sbjct: 33  TTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFN 92

Query: 96  MHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKV-AFDRGGYPYHG 155
              L   ST+QKSI      T    IE AK+VGE + K+ ++  I+++ ++DR G     
Sbjct: 93  KKCLFYASTLQKSIRGDPPCT---VIEAAKRVGEELIKASIDLKINEISSYDRNGNKRGE 152

Query: 156 RVEALADAAREHG 168
           R++A   A  +HG
Sbjct: 153 RMQAFEIAIAQHG 162

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BLAST of CmoCh14G015820 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 118 GPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHG 155
           G TIE+AKKVGE I KSC+E GI+KVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

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BLAST of CmoCh14G015820 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 4.6e-72
Identity = 148/170 (87.06%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MSSAAASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           M+S  A  SFLG+SFL  + SQN+ NR  L+FPATTSSSG+HSL V+AKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of CmoCh14G015820 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 3.3e-70
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 1


Query: 1   MSSAAASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           M+S  A  SFL +SFL  + SQN+ NR  L+FP TTSSSG+HSL V+AKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of CmoCh14G015820 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 225.3 bits (573), Expect = 7.9e-56
Identity = 126/168 (75.00%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 5   AASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSG--QHSLAVQAKATTRREDRQARHS 64
           +AS+SFLG++    ASSQ L  R +L    TT S      SL V+AKATT+REDR ARH 
Sbjct: 2   SASISFLGTAI---ASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +SE  DYTAGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSEEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of CmoCh14G015820 vs. NCBI nr
Match: gi|694359441|ref|XP_009359828.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 224.9 bits (572), Expect = 1.0e-55
Identity = 128/168 (76.19%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   AASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSG--QHSLAVQAKATTRREDRQARHS 64
           +ASLSFL       ASSQ L  R QL   A T S      SL V+AKATT+REDR ARH+
Sbjct: 2   SASLSFL-------ASSQQLWLRPQLVGVAATPSPRPQSRSLVVEAKATTKREDRTARHT 61

Query: 65  RIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIE 124
           RIRKKVEGT ERPRL+VFRS+KH+YVQVIDDSKMHTLA+ STMQK ISE  DYT+GPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSHKHIYVQVIDDSKMHTLASASTMQKPISEEFDYTSGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGISKVAFDRGGYPYHGRV+ALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGISKVAFDRGGYPYHGRVQALADAAREHGLQF 162

[Close]

BLAST of CmoCh14G015820 vs. NCBI nr
Match: gi|596288596|ref|XP_007225963.1| (hypothetical protein PRUPE_ppa012509mg [Prunus persica])

HSP 1 Score: 224.2 bits (570), Expect = 1.8e-55
Identity = 125/168 (74.40%), Postives = 139/168 (82.74%), Query Frame = 1


Query: 5   AASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSG--QHSLAVQAKATTRREDRQARHS 64
           +AS+SFLG++    ASSQ L  R +L    TT S      SL V+AKATT+REDR ARH 
Sbjct: 2   SASISFLGTAI---ASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYTAGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

The following BLAST results are available for this feature:

BLAST of CmoCh14G015820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	1.3e-53	72.15	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	1.5e-43	64.34	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	1.9e-33	65.25	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	7.2e-33	64.41	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOSW	6.1e-32	61.02	50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1	[more]

BLAST of CmoCh14G015820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A4_CUCSA	2.3e-70	85.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1	[more]
M5XM31_PRUPE	1.2e-55	74.40	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1	[more]
A0A058ZTZ3_EUCGR	1.1e-53	71.26	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1	[more]
A0A0K9QQ60_SPIOL	1.7e-52	71.01	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1	[more]
A0A059D442_EUCGR	2.8e-52	69.54	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1	[more]

BLAST of CmoCh14G015820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	7.1e-55	72.15	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	6.1e-14	37.59	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	5.9e-09	72.97	structural constituent of ribosome	[more]

BLAST of CmoCh14G015820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077079\|ref\|XP_008439021.1\|	4.6e-72	87.06	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|449459812\|ref\|XP_004147640.1\|	3.3e-70	85.29	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus]	[more]
gi\|645231256\|ref\|XP_008222310.1\|	7.9e-56	75.00	PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]	[more]
gi\|694359441\|ref\|XP_009359828.1\|	1.0e-55	76.19	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri...	[more]
gi\|596288596\|ref\|XP_007225963.1\|	1.8e-55	74.40	hypothetical protein PRUPE_ppa012509mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004389	Ribosomal_L18_bac-type
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G015820.1	CmoCh14G015820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 28
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 54..170 score: 6.7
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..170 score: 1.1
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 70..170 score: 1.8
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 48..170 score: 3.7
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 53..168 score: 6.32

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G015820	Cucsa.252040	Cucumber (Gy14) v1	cgycmoB0700
CmoCh14G015820	CmaCh14G015460	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G015820	CmaCh06G015960	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G015820	Cla021845	Watermelon (97103) v1	cmowmB231
CmoCh14G015820	Csa3G171790	Cucumber (Chinese Long) v2	cmocuB239
CmoCh14G015820	MELO3C006766	Melon (DHL92) v3.5.1	cmomeB230
CmoCh14G015820	ClCG05G007000	Watermelon (Charleston Gray)	cmowcgB219
CmoCh14G015820	CSPI03G15510	Wild cucumber (PI 183967)	cmocpiB243
CmoCh14G015820	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	cmolsiB234
CmoCh14G015820	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G015820	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G015820	MELO3C006766.2	Melon (DHL92) v3.6.1	cmomedB260
CmoCh14G015820	CsaV3_3G015690	Cucumber (Chinese Long) v3	cmocucB0283
CmoCh14G015820	Cla97C05G088670	Watermelon (97103) v2	cmowmbB243
CmoCh14G015820	Bhi01G000838	Wax gourd	cmowgoB0317
CmoCh14G015820	CsGy3G015560	Cucumber (Gy14) v2	cgybcmoB290
CmoCh14G015820	Carg15519	Silver-seed gourd	carcmoB0946
CmoCh14G015820	Carg19585	Silver-seed gourd	carcmoB0388

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G015820	CmoCh06G015910	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:

None