CmoCh06G015910 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L18
Location	Cmo_Chr06 : 11154841 .. 11157437 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACCGGTGCACAAAAGGATAAGGCAATTCCCAAGAAGAAAAGGAACGAACCAGTAGAGCCTTCGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGCAGGACGACAATGTCTTCAGCCATTGCTCCATTATCGTTCCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCAACCATTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGCCATTCTCGCATCAGGAAGAAGGTAATCATCGAGTCCTTATTCCTCTATTTAACAACTTACCGCCTTCCCTCCCCTTCGCGTACTTTGTTGTCCTAATTCGGCGTTTCTCTTGTTCCGCATTGTTCTGTGCCCTAAAATTTTTCGGAGATTCACCGGAAATGGAGGTAGGTTGGGATTATTCTTGAAATGAGGTATCTAGGTTTCGTTTGTTTTAATTATTCCCGGGAATTACTCGGTGTTTCTTGGTTCTTATTGCAAGTGTGTGATGTTGTTTTACTTCCTTGTGGATATTGTTTCATTCTAGGTATCTATTTATTGTGAACTTCCAAAGGATTGATTTGATAATTCATGAACTCGTCGTTTATTTTAGAAGTTCTGGTTAGACTAGCTTGGAGGTGTACTTGTATATTAGAATTTTGTCATTGTTCCACTACCAAGGTCCTGGATTTCTGAAGATTGAGGAAAAGAGGGAAAAGAACAATGAGCTTGTTTATTTGTCATTGCAGGGAGTCAAAATTTCAAAATAGAAATATTTTATTGTTCTCAGCATCAAATGATGTTCATGAAAGCTGTAATTGGAATTTGTTTCAAGATAAGATCTGCGGAGACTTACAGTGCTTTGGGCCTCAGATGACTTGAAAGTAAATTTACTCATTGGAGAAGCTAAAATTTATAGAAAAATGTAGCTTGTACAAAGAATAGATAGGAAACCAGAGTTTGGAGCCTAGAACACAAAACAAGATAAGAAAGATATCCCGCATACTACTTATTTTTTTAGTTAGGAAACAAGCCTCATATATGGAACCACAATCGATTACAGTCGAAATGTGGGATGGTAACTGATCTCTCAAAACTGGAGGCTAAAGATGGTACAAGAATGGATCATTCTACACATAAATGCCTCTATGAGATCCCTCATTGGTTGGAGATGATAACGAAACATTCCTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAACCTTGAGGGGAAGCCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGGACGGTTACAAATGGTACCAGAGCCAGACATCGGGCGGTGTACCAACGAGGACGCTAGGCCTCCAAGGGGGTGGATTGTGAGATCCCACGTTGGTTGGAGAGGAAAACGAAGCATTCCTTATGAGGGCGGGGAACCTCTCCCTAGTAGATGCGTTTTAAAATCAAGAGGCTGACGGCGATACGTAACGGGCCAAAGTGGATGATATATGCTAGTAGTGGGCTTGAGCTGTTACAAAAACACTACACATCCTTGACCCAACACATGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATTAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGGCTCCCTTTAGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGTGAGTTCACTGCAACTAAGAATTAATTCATTTATGTTTAGCTTTCATTCTTACCCAGCTTCTGTAACGGTCCAAGCTCACCACTAGCAGATATTGTTCTCTTTGGACTTTCCCTTTTGGACTTCCTCTAATAGATATTGCCCCCTTCAAAATGTCTTTACATGGACACTGAGTTTAGTTATCGTACATGGCCTTGCTTGAAAAGATTTATTCAATAAGTTCCATCTCTATGCCCTTGAGCACTAGTCCAACTTGTCATTCTATGTACTCTTACATATGTAGCAGGCCATATCGACAGTAGAATTACAAGTTTAGAAACTAAACAGACACCATCATAATTTACGGTCGCATCCGCACCTTCAGAAGTGAAATCTTTGTTATATGTGGATAATATATGATTGCAGGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGGTCTGA

mRNA sequence

GAAAAACCGGTGCACAAAAGGATAAGGCAATTCCCAAGAAGAAAAGGAACGAACCAGTAGAGCCTTCGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGCAGGACGACAATGTCTTCAGCCATTGCTCCATTATCGTTCCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCAACCATTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGGTCTGA

Coding sequence (CDS)

ATGTCTTCAGCCATTGCTCCATTATCGTTCCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCAACCATTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGGTCTGA

Homology

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BLAST of CmoCh06G015910 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.3e-54
Identity = 110/136 (80.88%), Postives = 116/136 (85.29%), Query Frame = 1


Query: 33  PSTISSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P + SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGL 169
           HGR+EALA AAREHGL
Sbjct: 153 HGRIEALAAAAREHGL 168

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BLAST of CmoCh06G015910 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.1e-46
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 5   IAPLSFLGSSILGVSYSQNLRIP-PHLNFPSTISSSGRHSLVIEAKA--TTRREDRAARH 64
           +A  +  G+     + S +L IP P ++ PS   +  R SLV+ AK   +T + DR ARH
Sbjct: 2   LASPALAGARAFAATVSGSLGIPIPAISAPSPSQARRRASLVVVAKVKVSTPQADRIARH 61

Query: 65  SRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTI 124
            R+RKKV GTTERPRLSVFRSNKHLY QVIDD+K  TL + STM KS+S+ L+Y++GPT+
Sbjct: 62  VRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTV 121

Query: 125 EVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++ALADAARE+GL
Sbjct: 122 EVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGL 168

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BLAST of CmoCh06G015910 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           LD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGL 118

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BLAST of CmoCh06G015910 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           LD T+   IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGL 118

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BLAST of CmoCh06G015910 vs. Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 74/116 (63.79%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD K  T+ + ST+ K  S  
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDKEFS-- 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           LD T+   I+ AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL
Sbjct: 67  LDSTN--NIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGL 118

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BLAST of CmoCh06G015910 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.0e-74
Identity = 148/168 (88.10%), Postives = 156/168 (92.86%), Query Frame = 1


Query: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60
           M+S  AP SFL +S L VSYSQN+   PHL+FP T SSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 168

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BLAST of CmoCh06G015910 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 121/165 (73.33%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 6   APLSFLGSSILGVSYSQNLRIPPHL-NFPSTISSSGR-HSLVIEAKATTRREDRAARHSR 65
           A +SFLG++I     SQ L + P L    +T+S   +  SLV+EAKATT+REDR ARH R
Sbjct: 3   ASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHIR 62

Query: 66  IRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEV 125
           IRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYT+GPTIEV
Sbjct: 63  IRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIEV 122

Query: 126 AKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           AKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 123 AKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 164

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BLAST of CmoCh06G015910 vs. TrEMBL
Match: A0A0K9QQ60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.3e-54
Identity = 121/171 (70.76%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 3   SAIAPLSFLGSSILGVSYS--QNLRIPPH-LNF-PSTISSSGRHSLVIEAKATTRREDRA 62
           +A   LSF  S++   S S  Q L +PP  +NF P T+        +I+AKA TRREDR 
Sbjct: 2   AAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP-------LIQAKAHTRREDRT 61

Query: 63  ARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSG 122
           ARH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DY++G
Sbjct: 62  ARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAG 121

Query: 123 PTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV 170
           PT+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGLV
Sbjct: 122 PTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLV 165

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BLAST of CmoCh06G015910 vs. TrEMBL
Match: W9QXJ8_9ROSA (50S ribosomal protein L18 OS=Morus notabilis GN=L484_010458 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.8e-54
Identity = 118/161 (73.29%), Postives = 132/161 (81.99%), Query Frame = 1


Query: 8   LSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAARHSRIRKK 67
           LSF  S+++  S    L++   L+FP         SLV+EAKA TR+EDR ARHSRIRKK
Sbjct: 3   LSFFQSAVVP-SQQLQLQVGIGLSFPRL---QRVQSLVVEAKAKTRQEDRIARHSRIRKK 62

Query: 68  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKV 127
           VEGT ERPRLSVFRSNKHLYVQVIDD+KM TLAA STMQK+ISE   YTSGPT+EVAKK+
Sbjct: 63  VEGTPERPRLSVFRSNKHLYVQVIDDTKMRTLAAASTMQKAISEEFSYTSGPTLEVAKKI 122

Query: 128 GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           GE IAK+CLEKGITKVAFDRGGYPYHGRVEA+ADAAREHGL
Sbjct: 123 GEVIAKTCLEKGITKVAFDRGGYPYHGRVEAIADAAREHGL 159

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BLAST of CmoCh06G015910 vs. TrEMBL
Match: A0A061GRD3_THECC (Ribosomal L18p/L5e family protein isoform 1 OS=Theobroma cacao GN=TCM_038745 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.6e-53
Identity = 116/156 (74.36%), Postives = 127/156 (81.41%), Query Frame = 1


Query: 13  SSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTT 72
           SS LGVS S  L  P H + PS +       L ++AKA TRRED  ARHSRIRKKVEGT 
Sbjct: 27  SSFLGVSLSPRLPCP-HPSLPSIL-------LNVQAKARTRREDCQARHSRIRKKVEGTP 86

Query: 73  ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIA 132
           +RPRL VFRSNKHLYVQVIDDSKMHTLA+ STMQK I E  DY+SGPTIEVAKK+GE IA
Sbjct: 87  DRPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKPICEEFDYSSGPTIEVAKKIGECIA 146

Query: 133 KSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           KSCLE+GITKVAFDRGGYPYHGR+EALAD+AREHGL
Sbjct: 147 KSCLEQGITKVAFDRGGYPYHGRIEALADSAREHGL 174

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BLAST of CmoCh06G015910 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-55
Identity = 110/136 (80.88%), Postives = 116/136 (85.29%), Query Frame = 1


Query: 33  PSTISSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P + SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGL 169
           HGR+EALA AAREHGL
Sbjct: 153 HGRIEALAAAAREHGL 168

[Close]

BLAST of CmoCh06G015910 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-17
Identity = 62/169 (36.69%), Postives = 91/169 (53.85%), Query Frame = 1


Query: 3   SAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISS-SGRHSLVIEAKATTRREDRAARH 62
           ++++ + F  S ILG       R+ P+  FP  I++ S     VIEA+  TR E    R+
Sbjct: 5   TSLSTVQFRVSDILGT------RLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRN 64

Query: 63  SRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTI 122
            R RKK  GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      T    I
Sbjct: 65  RRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VI 124

Query: 123 EVAKKVGEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHGLV 170
           E AK+VGE + K+ ++  I ++ ++DR G     R++A   A  +HG +
Sbjct: 125 EAAKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

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BLAST of CmoCh06G015910 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 117 SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 10  TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

[Close]

BLAST of CmoCh06G015910 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 3.1e-76
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 1


Query: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60
           M+S  AP SFLG+S L VSYSQN+   PHL+FP+T SSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 168

[Close]

BLAST of CmoCh06G015910 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 148/168 (88.10%), Postives = 156/168 (92.86%), Query Frame = 1


Query: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60
           M+S  AP SFL +S L VSYSQN+   PHL+FP T SSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 168

[Close]

BLAST of CmoCh06G015910 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 225.3 bits (573), Expect = 7.9e-56
Identity = 122/165 (73.94%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 6   APLSFLGSSILGVSYSQNLRIPPHL-NFPSTISSSGR-HSLVIEAKATTRREDRAARHSR 65
           A +SFLG++I     SQ L + P L    +T+S   +  SLV+EAKATT+REDR ARH R
Sbjct: 3   ASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHIR 62

Query: 66  IRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEV 125
           IRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +SE  DYT+GPTIEV
Sbjct: 63  IRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSEEFDYTAGPTIEV 122

Query: 126 AKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           AKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 123 AKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 164

[Close]

BLAST of CmoCh06G015910 vs. NCBI nr
Match: gi|596288596|ref|XP_007225963.1| (hypothetical protein PRUPE_ppa012509mg [Prunus persica])

HSP 1 Score: 224.2 bits (570), Expect = 1.8e-55
Identity = 121/165 (73.33%), Postives = 137/165 (83.03%), Query Frame = 1


Query: 6   APLSFLGSSILGVSYSQNLRIPPHL-NFPSTISSSGR-HSLVIEAKATTRREDRAARHSR 65
           A +SFLG++I     SQ L + P L    +T+S   +  SLV+EAKATT+REDR ARH R
Sbjct: 3   ASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHIR 62

Query: 66  IRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEV 125
           IRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYT+GPTIEV
Sbjct: 63  IRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIEV 122

Query: 126 AKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           AKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 123 AKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 164

[Close]

BLAST of CmoCh06G015910 vs. NCBI nr
Match: gi|470122011|ref|XP_004297049.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 221.9 bits (564), Expect = 8.7e-55
Identity = 124/163 (76.07%), Postives = 132/163 (80.98%), Query Frame = 1


Query: 6   APLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAARHSRIR 65
           A LSF+GSS       Q L + P     S      + SLVIEAKATT+REDR ARH RIR
Sbjct: 3   ASLSFVGSS-------QQLWMRPKFVGVSAPKPQSQ-SLVIEAKATTKREDRTARHIRIR 62

Query: 66  KKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAK 125
           KKVEGTTERPRL VFRSNKHLYVQVIDD+KMHTLA+ STMQK ISE  DYTSGPTIEVAK
Sbjct: 63  KKVEGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEFDYTSGPTIEVAK 122

Query: 126 KVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           KVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALA+AARE+GL
Sbjct: 123 KVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALANAARENGL 157

The following BLAST results are available for this feature:

BLAST of CmoCh06G015910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	4.3e-54	80.88	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	1.1e-46	60.48	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	1.2e-32	65.52	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	1.2e-32	65.52	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOTN	4.0e-31	63.79	50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=...	[more]

BLAST of CmoCh06G015910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A4_CUCSA	2.0e-74	88.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1	[more]
M5XM31_PRUPE	1.2e-55	73.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1	[more]
A0A0K9QQ60_SPIOL	2.3e-54	70.76	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1	[more]
W9QXJ8_9ROSA	8.8e-54	73.29	50S ribosomal protein L18 OS=Morus notabilis GN=L484_010458 PE=3 SV=1	[more]
A0A061GRD3_THECC	2.6e-53	74.36	Ribosomal L18p/L5e family protein isoform 1 OS=Theobroma cacao GN=TCM_038745 PE=...	[more]

BLAST of CmoCh06G015910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	2.4e-55	80.88	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	5.9e-17	36.69	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	1.2e-09	73.68	structural constituent of ribosome	[more]

BLAST of CmoCh06G015910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077079\|ref\|XP_008439021.1\|	3.1e-76	89.88	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|449459812\|ref\|XP_004147640.1\|	2.9e-74	88.10	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus]	[more]
gi\|645231256\|ref\|XP_008222310.1\|	7.9e-56	73.94	PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]	[more]
gi\|596288596\|ref\|XP_007225963.1\|	1.8e-55	73.33	hypothetical protein PRUPE_ppa012509mg [Prunus persica]	[more]
gi\|470122011\|ref\|XP_004297049.1\|	8.7e-55	76.07	PREDICTED: 50S ribosomal protein L18, chloroplastic [Fragaria vesca subsp. vesca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004389	Ribosomal_L18_bac-type
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048513	animal organ development
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0040007	growth
biological_process	GO:0071669	plant-type cell wall organization or biogenesis
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048653	anther development
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015910.1	CmoCh06G015910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 27
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 54..168 score: 1.3
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..168 score: 8.7
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 70..169 score: 1.1
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 47..170 score: 9.2
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 53..168 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015910	Cucsa.252040	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015910	CmaCh14G015460	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015910	CmaCh06G015960	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015910	Cla021845	Watermelon (97103) v1	cmowmB793
CmoCh06G015910	Csa3G171790	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015910	MELO3C006766	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015910	ClCG05G007000	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015910	CSPI03G15510	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015910	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	cmolsiB759
CmoCh06G015910	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015910	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015910	MELO3C006766.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015910	CsaV3_3G015690	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015910	Cla97C05G088670	Watermelon (97103) v2	cmowmbB833
CmoCh06G015910	Bhi01G000838	Wax gourd	cmowgoB1005
CmoCh06G015910	CsGy3G015560	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015910	Carg15519	Silver-seed gourd	carcmoB0947
CmoCh06G015910	Carg19585	Silver-seed gourd	carcmoB0390

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G015910	CmoCh14G015820	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:

None