Cp4.1LG08g05470 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g05470
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein L18
Location	Cp4.1LG08 : 813246 .. 822108 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATTTTATTTTTTGTTCTCTTTTTATTAATTTGCATGGATTTTCCAATTAACATGGTGAAATGACAGAAAAACCGGTACACAAAAGGATAAGGCAATTCTCAGGACGAAAAGAAACGAACCAGTAGAGCCTTCGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGCAGGACGACAATGTCTTCAGCCATTGCTCCTTTATCGTTCCTCGGAACTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGGGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTAATCATCGAGTCCTTATTCCCCTATTTAACAACTTACCGCCTTCCCTCCCCTTCGCGTACTTTGTTATGCTAATTTGGCGTTTCTCTTGTTCCACATTGTTCTGTGCCCTAAAATTTTTCGGAGATTCACCGGAAATGGAGGTAGGTTGGGATTATTCTTGAAATGAGGTATCTAGGTTTCGTTTGTTTTAATTATTCCCGGGAATTACTCGGTGTTTCTCGGTTCTTATTGCAATTGTGTTGTTGTTTTACTTCTTTGTGGATATTGTTTCATTCTAGGTATCTATTTATTGTGAACTTCCAAAGGATTGATTTGATAATTCATGAACTCGTCGTTTATTTTAGAAGTTCTGGTTAGACTAGCTTGGAGGTGTACTTGTATATTAGAATTTTGTCATTGTTCCACTACCTAGGTCCTGGATTTCTGAAGATTGAGGAAAAGAGGGAAAAGAACAATGAGCTTGTTTATTTGTCATTGCAGGGAGTCAAAATTTCAAAATAGAAATATTTTATTGTTCTCAGCATCAAATTATGTTCATGAAAGCTGTAATTGGAATTTGTTTCAAGATACGATCTGCGGAGACTTACAGTGCTTTGGGCCTCAGATGACTTGAAAGTAAATTTACTCATTGGAGAAGCTAAAATTTATAGAAAAATGTAGCTTGTACAAAGAATAGATAGGAAACCAGAGTTTGGAAAGCCTAGAACATGAAAACAAGATAAGAAAGATATCCCGCATACTATTTATTTTTTTAGTTAGGAAACAAGCCTCATATATGGAACCACAATCGATTACAGTCGAAATGTGAGATGGTAACTGATCTCTCAAAGCTGGAGGCTAAAGATGGTACAAGAGTGGATCATTCTACACATAAATGCCTCTATGAGATCCCTCATTGGTTGGAAATGATAACGAAGCATTCCTTATAGGGGTGTGGAAACCTCTCCCTAGCAGAGACACATTTTAAAACCTTGAGGGGAAGCCCAAAAAGGACAATATCTACTAGCGGTGGGCTTGGATTGTTACAAATGGTACCAGAGCCAGATATCGGGCGGTGTACCAACGAGGATGCTAGGCCTCCAAGGGGTTGGATTGTGAGATCCTACAATGGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTGGAAACCTCTCCCTAGTAGATGTGTTTTAAAATCAAAAACTGCTGGCGATACGTAACGGGCTACAGTGGACGATATCTGTTAATAGTGGGCTTGAGCTTGAGCTGTTACAAAAACACTACACATCCTTGACCCGACACTTGGAAAGGTGACATTTTCAATTTTGGCTATAGGATCTGTCTCGAACTCAAAAACTTTTGGATTACATCTAGACTGGTTAAAGAAAGATCTCGCTTTGTCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTAGAACAGCACTGAGTTCAAAATTGTTATATTTAGAAGAGCCAATTGATTCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCTTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGTGAGTTCACTACAACTAAGAATTAATTCATTTATGTTTAGCTTTCGTCCTTCCCCTTCCAAACCCTTTTTGCATTAGCTTGATGTCTATGTAGATCTTCTTACCTCTTCAAATAAGAGAGCATCTGTAACGGCCTAAGCAGACATTGTCCTCTTTAGAGCACTGAGTTTAGTTATCGTACATAGCCTTGCTTGAACAGATCTGTTCATAAGTTCTACCCCTATGCCCTTGAGCTCTAGTCCGACTTGTCATTCTACGTATGCATGTAGGATTACAAGCTTAGGGATGTGATTAAGTTTAGAAACTAAACAAACAGCAACATAGTTTGCGGTGGCAGCCGACCTTCTGAAGCGAAATCCTTGTTATATGTGGGTAATATGGTTGCAGGAAGTAGCAAAGAAAGTGGGGGAAGCTATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTGTGTTTTTCATTGTCTTCTGTATGGTTTGCTGTTAACAGTGCCATCAGATGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTGTTTCACTTGAAATTAAGAGGGAAATTATTCATTCATTCCTCATCTTTTTTCAAAAACAAAATTTACATTGAATCTATCATTTGAAAACAAAAGTACAGACGCTTTCATGTCGAAGAAATCGTTATTAGCCTATCTTTTGTGACAGAGATTTGAATATCTGATCTCTCGGTAGATGATATATGTCTTAACTAGTTGAACCATTGACTATTAAAATAGTAATTGATGTTTTATTTGCTATATGTGCTCGGATTTACTATGGTGAACTGTTTGACTCTTAAGAAAGTAATTGATATTTTATCTGCTAAGATATGCTCGGATTCATTGTGTTATGTACTAAGAAGATAGTGTAACGATTAAATACAGTCAACACGAGCTAGCTTAGTCTTAAAGATTTCTGCTCATGAATTGGGAGGTTCAACTTTATTTTTTCGTTAAATTTCTTATTCTAAATTCTAATATATGAATTGACCGTAAAAAATTATCGAAAGATCTGATATAATGGATTAGAAGGTGTTCACATGAAATAATTTTTTTGTCGAGATTGTTCAATTTGAACTTTTATTAACAAAATCTTTAAAACTCAAAACGAACGAACTCGTAATTGATACAGACTTTGAGTTAAGAGATCAGATCTTCGAATGTGTGATATAGTCCTTTGATAAAGAAGGTTAATAAATATCAGGTGACCGGGAAAAACAGAACTGCAAGGGTCTCAGCAATGGCAGGTTCTACTGGTGGTAACGCTTCTTCCAATTCCTCGCCTACTCCTCCTCCACCCAAAATTCTTCTGGCAAAGCCTGGCCTCGTCACCGGTGGAGCAATTTCCTCTAAGATTGGGCGCGGCGCCGGCGCCGATGACGAATCCGCATCAATTCGGTCCCGTCTCCCTTCTCTTGGATCCCTGAATCTTCTCTCCGATTCCTGGGACTTCCACATTGACCGTTTCCTGCCGGTAAACGATTACATACTCCCTCTTTTTTCTTTTCGCGTCTTGTTGCTATTGAAATTAGGAACTGTTCCAGTAAAATGTGTTTATTGATGGAATTTGGTATACTTAAAGTCTTTTTGTTAATTGATGAAATGCTCGAGTGAATCGATCTCTTACACTCCGTTTGAAGTAGAAACAAAATCATCTTAAGTTTTAGAGTTAATCAGCTGCAGAAATGGGCGTTTTATTTTTGGTTAGATGATACTGATAGAGTTGGATCAGTTGGTTTAGAAACATTTTGTCTCTTTACAGTTGAGGAGAATATCATCTCTCTAGGGTTTCACTTGCAGTTTTTAAGGGTTGGGAGGAGATTTGAGAATTGGTGGGCAGTACGATTAACATTTTCTTTACTGTTCCTCTACAGTTTTTGACTGAGAATACGGAGTTCAAAGTGGTGGGAATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATCATGAATGAGATTTATGGCTTCGATGGAAGTTCTCCAGGTGAGATATCTCTGATGCTACGTTCTTAATTTGTTTGTTCTGTTTTTGTTCACTTCTAGATTCAAGTGACCAGCAAATAATGTCTTTGTCTAGTTCAAATTTTTGGCTGCTTGATCCTTGAGTGTGTTTTCCTTTGGCTTTTATTTTTCTGCTTGCTTGCCCCCACTTAGTCTGCTCATCCCCTGTCCAGACTGAGCTCTAGAAAATAACTATCCCTACAAGATCTTAGGTTTTTGTATTGAAGAAGAAAACTCCATCGACTTTGTTCAGAGATTTTCGTCTATGGTTTTCAGCCATTTCGAGTCTTTTGAAAGCTGATTATGGAGGATCTGGATCATGTTGTTTGAAGATGCCATTTTGCATTTAAGATGTTGGATATTTTTGGAATACTTTTGGGATATTTTGGAGTTAGATTGAAGCGCTTACCATGTAAGTTGGTGTTTTCATTAAACAAGACTCCTACAAATGTAGTGTTCATCCTATTATTTTATTTATGGATTTTGCAAGTTTTTCTATTGTTTGTCCTCAATCTTTTAATCAAGAATCTTGTGAAGGCTACAACTTTATATGCTTTAAAGGCTAAGTATTACTGCAACATCTGTTTCTTGTCATGGACAAAATCTTCGTCATTCCTCATCAGTACTTTCCATTCATAGTTTCATCCTTCTGTACATGTTTCAGGTATGCTACCACCATTTCCAATTCTATCTGAAGACGTTAGAGCCATGGCTAGGCATTGCACGTTGGGCATTGAGCCACGAATTTCTTCAGAGAGGATCATTCTTCTGGATACTCAGGTGTTTTCCTAGTGAATATATAATTCGCCATTTTATGTTTTAGGATAACTGGATCAGGTATTTGGATAGATAAATACATTATTTCTCACTTGATTTTTAAGTTTTCGAACTTTTCAAAGAGAATACTATGATCTATATAGTCACAATTATATCCTATCAGCCTAGAATGATTTTTGCATTTTCAATTTCCTTGACAAAGATTTGAAATGAAGCTAATTCCAAAACAAAAAGTGGGTGATTGATGCACTTTTAGAAGTGAGATTCTCTTTTTTTCTGTAAGAGTCGTTCCAAGCTGCGGAGATTGGATTATGGTCCGAGATTAGTCCTTGCATGCATAGTGACATAACACAAACATACTTTCAAGCAAGTAACGGATGCTTGTGCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGCTAAATTGTAGAAAATACCCCTATACTTTGAGTTTTGTTTCAATAATACCCCTAAACTTTAAAATGTTCCAAAAATACCCCTAGTCTTTCAAAACATATTCTAGTAATAGTATTTTTTAAAGGTCTTAGGTATTATTGAAACAAAATTTCAACGTTTTCTATCCAAAACTTAACTTCAAGGGTTTTTGTGAATGTTTTTTTATAGGCCGGGGATAATGTTAACTTTTGAAAACCAAGTTGTATTATTGAAACAAAATTGTAACACTTTTGTTAACGTTGATGAAAGCTAGTTTTCTCATAAAAGAGGGGGAAAGCAGAAATCCTCTTTGATGGATACTCGTTTTGTCTCGCTAGTTTGAATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAACTAAACTGAAGTGACTGAAGTGAAGGAACAATATTCTTTTATAGGTTTGACTTTTTATTTCTGTTTCTTGAGTGACCGGCTAATGGTGATGATGCATAAATCTTCTGAATTCTTGTGATGTGAGATTTGTATAGTCTTATATTTTCATTTGTTACTTAAAGTTTTGCATGATAATTTGATAATTGCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCAGATGGTTCATCCACCATCTCAGTTATTAGTGGCGAATCTCTATCTGCTGAATTGGCTCATGAACTTATGAGTATTCAGGTAACACTAAAGAGAGCCTTCTTTTGTCTGTGTTTTGGAGGGGTTGGGGGAATGGGTAGCAGTCTGAAGAGCTTTAGAGTTTGACCACATGATTACACTAACAATGCTATTATGGTGTGGAATTATTTATCCATTGTAGTTATGATCTTACAAATTTCTTCCCGTTACTCTGCAAGGATTCCTTTAGCTGGGCATTCTTCTAGCGTCCATTTGCAATATTGTCCTTGTGATATCGGAGGGAGCTCACGATCTAAATATGTGGCGTTTGATGTTAACTGTAAGTAGTAGGAACCTTTATCTTGATCATCTGTTCTTAACCATGTCATGTCATGAAGCTCGTTTTTGTCGTTGCTCTATCATAACACTTATTTCTTTTTTGCAGGTTGACTTGCTTAAACATGGCTTGCCCGATCCATCTTCTTCTGTTTTCTCTCATACACAAAATTCTAATGTAGGATCCGAGAAGGAACACAAAGATAAAGTTTCTGCAAGTGAAGAATATATGGCTACTCCAATCTTTGTTCATGCAAAGTGAGTGAAAACCTTCTAAGATTTTTTTACATCTTTTCAACAAGGTCGCCTCTAAACTTAGAAACCATTAACAATAACAAGGAAGAACATCCTTCAAGGCACAAGCTAGTAGGCGAGGCAGCATAGACTCTATTTCACATCCATACCCCACGAAACCATGAAATCTGCTGTTTAAAAAATCTTGATCTCCTAAACCTTACCCCTAAATCCTCTTAGTCATCTCCAGCCTCAAAATCTGAAATAGTATGTAAAGAATCTCGTTATTTAAAGAGTTTAATTGTAACAGCCCAAACCCACCGCTAGTAGATATTATCCTCTTTGGGCTTTTCGTTTTGGGCTTCCCCTCAAGGTTTTTAAAACTCATGTGCTAGGGAGAGGTTTCCACACTTTTATAAAGAATGTTTCGTTCTCCTCCCAACTGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAACGTCCTTGCTGGCACTCATTCCATTCTCCAATCGATATGGGACCCCCAATCCACCCCCTTTGGGGCCCAGCGTCCTTGTTGGCACACTACCTCGTGTCCATCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCTCCTTCGTGGCTTAGTTTCCTCGTTGACACATCGGCTGGTGTCTAGCTCTGATACCATTTCTAACCGCCCAAGCCCACTGCTAGTAGATATTGTTCTCTTTAGGCTTCCCCTCAAGGTTTTTAAAACGTGTTTGCTAGGGGGAGGTTTTTGCACTTTTATAAAGAATGTTTCGTTCTCCTCCCCAACCGATCTGGGATCTCACATTGATAAACCATAAATTATCAGGAGATATAGTTTTAGAGTAACAGAAGAATTAGCTAAGAAGTTAGAAATAAAATCTGCAAAGAAATGCACACCTTCCGAACCCAAAATTTCCAATCCCTATTAGAACAATTCTTAAACCTTTAACATTTTGCTCAAGGAATATGGTAATAACTGATTGGTACTCTGTTTCTTTTTTTAAATCATGAGCAGAGTGGAGGATCCAGATCTTGTTCCACACAACATCTTGCAACTAAAGAGAGCATTTGCACAATGTTTTAAAACCGCCTCATTTATGGGAGACAAGGTCAAAAGTGACAAGGTCCAAAGTGAGCAACTACTTTCCTCTGTGGTTCCAGATACCAGAAATTTAGATGTCGATGGTGAAGATCGAAGGTTGCTTTTCATCCCAAATCGAAACAAGGATGACTCGACAAGAGGCCAATATGAAAGTTTTAACTTAGCTTTGTGGAAGCTGAGGGATCAGGTACTTGGTTCACTTTTACCTTTTTTTTTTTTTTCATCTACCCTTTATATATATGGTTTAAATCTCTGAGTTTTTATAATTAACTCACTGAGCATCACTTGTGAAGGCATTGTACCTTCGACAAAAAGGTCGGAGGTTCAAATCCTTACCCCTACTTGTTGAACTCAAAAAACTTTTGTACTTCGTTTATTCGAGTTCCTAAACTTTCAAACATTCCAATTTAATCTTTTTACTTTGTCTTAAAAATCTATTTTAATCATTGCTATGTGGACACATGTTCGATGAAAAGTATCTCATAGTTTTCTAACTAATTAATCTCCTTTACCTTCAGGTTCTATCCATGAATGGCACGTCGTTTTCGAGGACTGTTTCAGAACGTGATTGGTTAAAAAACTCAGTGAAGATATGGGAATTGGTGAAGAGCTCTCCCATTGTAATGGAGTATGCTAGAACGCTTCAATCTTCAGGTATGTTCAGGAGATAGTTGGATGATATGGTTCTGTTCTGTTTGTAAAGGAAGAACAAAAGCATGGTTAGTTGCATAGCCTTTAGTATTAGGCTTCATCACTAATTCTCCATTCTACTGAGCTGATCTCTGCTGTTTCACTTCAGCCATCATACATGGTATAGATTTTTCTTTTTTTTTGTTACGACAGATCGATTCGTTTGGTGA

mRNA sequence

TTTTATTTTATTTTTTGTTCTCTTTTTATTAATTTGCATGGATTTTCCAATTAACATGGTGAAATGACAGAAAAACCGGTACACAAAAGGATAAGGCAATTCTCAGGACGAAAAGAAACGAACCAGTAGAGCCTTCGAAGAAGAAGAAGAAGAAGAAGAGAAGAGAAGCAGGACGACAATGTCTTCAGCCATTGCTCCTTTATCGTTCCTCGGAACTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGGGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCTATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGACCGGGAAAAACAGAACTGCAAGGGTCTCAGCAATGGCAGGTTCTACTGGTGGTAACGCTTCTTCCAATTCCTCGCCTACTCCTCCTCCACCCAAAATTCTTCTGGCAAAGCCTGGCCTCGTCACCGGTGGAGCAATTTCCTCTAAGATTGGGCGCGGCGCCGGCGCCGATGACGAATCCGCATCAATTCGGTCCCGTCTCCCTTCTCTTGGATCCCTGAATCTTCTCTCCGATTCCTGGGACTTCCACATTGACCGTTTCCTGCCGTTTTTGACTGAGAATACGGAGTTCAAAGTGGTGGGAATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATCATGAATGAGATTTATGGCTTCGATGGAAGTTCTCCAGGTATGCTACCACCATTTCCAATTCTATCTGAAGACGTTAGAGCCATGGCTAGGCATTGCACGTTGGGCATTGAGCCACGAATTTCTTCAGAGAGGATCATTCTTCTGGATACTCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCAGATGGTTCATCCACCATCTCAGTTATTAGTGGCGAATCTCTATCTGCTGAATTGGCTCATGAACTTATGAGTATTCAGCTGGGCATTCTTCTAGCGTCCATTTGCAATATTGTCCTTGTGATATCGGAGGGAGCTCACGATCTAAATATGTGGCGTTTGATGTTAACTGTTGACTTGCTTAAACATGGCTTGCCCGATCCATCTTCTTCTGTTTTCTCTCATACACAAAATTCTAATGTAGGATCCGAGAAGGAACACAAAGATAAAGTTTCTGCAAGTGAAGAATATATGGCTACTCCAATCTTTGTTCATGCAAAAGTGGAGGATCCAGATCTTGTTCCACACAACATCTTGCAACTAAAGAGAGCATTTGCACAATGTTTTAAAACCGCCTCATTTATGGGAGACAAGGTCAAAAGTGACAAGGTCCAAAGTGAGCAACTACTTTCCTCTGTGGTTCCAGATACCAGAAATTTAGATGTCGATGGTGAAGATCGAAGGTTGCTTTTCATCCCAAATCGAAACAAGGATGACTCGACAAGAGGCCAATATGAAAGTTTTAACTTAGCTTTGTGGAAGCTGAGGGATCAGGTTCTATCCATGAATGGCACGTCGTTTTCGAGGACTGTTTCAGAACGTGATTGGTTAAAAAACTCAGTGAAGATATGGGAATTGGTGAAGAGCTCTCCCATTGTAATGGAGTATGCTAGAACGCTTCAATCTTCAGATCGATTCGTTTGGTGA

Coding sequence (CDS)

ATGTCTTCAGCCATTGCTCCTTTATCGTTCCTCGGAACTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCATTCCTCCTCATCTCAATTTTCCGTCGACCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGGGAGGACCGTGCTGCTCGCCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCTATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGACCGGGAAAAACAGAACTGCAAGGGTCTCAGCAATGGCAGGTTCTACTGGTGGTAACGCTTCTTCCAATTCCTCGCCTACTCCTCCTCCACCCAAAATTCTTCTGGCAAAGCCTGGCCTCGTCACCGGTGGAGCAATTTCCTCTAAGATTGGGCGCGGCGCCGGCGCCGATGACGAATCCGCATCAATTCGGTCCCGTCTCCCTTCTCTTGGATCCCTGAATCTTCTCTCCGATTCCTGGGACTTCCACATTGACCGTTTCCTGCCGTTTTTGACTGAGAATACGGAGTTCAAAGTGGTGGGAATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATCATGAATGAGATTTATGGCTTCGATGGAAGTTCTCCAGGTATGCTACCACCATTTCCAATTCTATCTGAAGACGTTAGAGCCATGGCTAGGCATTGCACGTTGGGCATTGAGCCACGAATTTCTTCAGAGAGGATCATTCTTCTGGATACTCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCAGATGGTTCATCCACCATCTCAGTTATTAGTGGCGAATCTCTATCTGCTGAATTGGCTCATGAACTTATGAGTATTCAGCTGGGCATTCTTCTAGCGTCCATTTGCAATATTGTCCTTGTGATATCGGAGGGAGCTCACGATCTAAATATGTGGCGTTTGATGTTAACTGTTGACTTGCTTAAACATGGCTTGCCCGATCCATCTTCTTCTGTTTTCTCTCATACACAAAATTCTAATGTAGGATCCGAGAAGGAACACAAAGATAAAGTTTCTGCAAGTGAAGAATATATGGCTACTCCAATCTTTGTTCATGCAAAAGTGGAGGATCCAGATCTTGTTCCACACAACATCTTGCAACTAAAGAGAGCATTTGCACAATGTTTTAAAACCGCCTCATTTATGGGAGACAAGGTCAAAAGTGACAAGGTCCAAAGTGAGCAACTACTTTCCTCTGTGGTTCCAGATACCAGAAATTTAGATGTCGATGGTGAAGATCGAAGGTTGCTTTTCATCCCAAATCGAAACAAGGATGACTCGACAAGAGGCCAATATGAAAGTTTTAACTTAGCTTTGTGGAAGCTGAGGGATCAGGTTCTATCCATGAATGGCACGTCGTTTTCGAGGACTGTTTCAGAACGTGATTGGTTAAAAAACTCAGTGAAGATATGGGAATTGGTGAAGAGCTCTCCCATTGTAATGGAGTATGCTAGAACGCTTCAATCTTCAGATCGATTCGTTTGGTGA

Protein sequence

MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVTGKNRTARVSAMAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLGSLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPFPILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGESLSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFSHTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASFMGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWKLRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRFVW

Homology

[Close]

BLAST of Cp4.1LG08g05470 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-53
Identity = 110/136 (80.88%), Postives = 117/136 (86.03%), Query Frame = 1


Query: 33  PSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGL 169
           HGR+EALA AAREHGL
Sbjct: 153 HGRIEALAAAAREHGL 168

[Close]

BLAST of Cp4.1LG08g05470 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 5.2e-46
Identity = 101/167 (60.48%), Postives = 127/167 (76.05%), Query Frame = 1


Query: 5   IAPLSFLGTSILGVSYSQNLRIP-PHLNFPSTTSSSGRHSLVIEAKA--TTRREDRAARH 64
           +A  +  G      + S +L IP P ++ PS + +  R SLV+ AK   +T + DR ARH
Sbjct: 2   LASPALAGARAFAATVSGSLGIPIPAISAPSPSQARRRASLVVVAKVKVSTPQADRIARH 61

Query: 65  SRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTI 124
            R+RKKV GTTERPRLSVFRSNKHLY QVIDD+K  TL + STM KS+S+ L+Y++GPT+
Sbjct: 62  VRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTV 121

Query: 125 EVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++ALADAARE+GL
Sbjct: 122 EVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGL 168

[Close]

BLAST of Cp4.1LG08g05470 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.3e-32
Identity = 76/116 (65.52%), Postives = 87/116 (75.00%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           LD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGL 118

[Close]

BLAST of Cp4.1LG08g05470 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.3e-32
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           LD T+   IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGL 118

[Close]

BLAST of Cp4.1LG08g05470 vs. Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-30
Identity = 74/116 (63.79%), Postives = 86/116 (74.14%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD K  T+ + ST+ K  S  
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDKEFS-- 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           LD T+   I+ AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL
Sbjct: 67  LDSTN--NIDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGL 118

[Close]

BLAST of Cp4.1LG08g05470 vs. TrEMBL
Match: A0A0A0L618_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171800 PE=4 SV=1)

HSP 1 Score: 723.4 bits (1866), Expect = 2.3e-205
Identity = 372/412 (90.29%), Postives = 383/412 (92.96%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGSTG N+SSNSSP PPPPKILLAKPGLV GG I+SKIGRGAGADDE ASIRSRLPSLG
Sbjct: 1   MAGSTGANSSSNSSPAPPPPKILLAKPGLVPGGPINSKIGRGAGADDEPASIRSRLPSLG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSST+SVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
            SAELAHELMSIQLGILLASICNIVLVISEG HDLNMW LMLTVDLLKHGLPDPSS + S
Sbjct: 181 PSAELAHELMSIQLGILLASICNIVLVISEGVHDLNMWHLMLTVDLLKHGLPDPSSPISS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H QNSNV SEKE+K+K S SEEYMATPIFVHAKV+D DLVP NILQLKRAFA  FKT+SF
Sbjct: 241 HAQNSNVASEKEYKEKTSTSEEYMATPIFVHAKVQDRDLVPQNILQLKRAFAYYFKTSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           MGDK   +KV SEQLLSSVVPDTRNLDVDGEDRRLL IPNRNKDDSTRGQYESFNLALWK
Sbjct: 301 MGDKF--EKVHSEQLLSSVVPDTRNLDVDGEDRRLLLIPNRNKDDSTRGQYESFNLALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           LRDQVLSMNG SF RTVSERDWLKNSVKIWE VKSSPIVMEYARTLQSS  F
Sbjct: 361 LRDQVLSMNGASFPRTVSERDWLKNSVKIWESVKSSPIVMEYARTLQSSGMF 410

[Close]

BLAST of Cp4.1LG08g05470 vs. TrEMBL
Match: D7T7Q7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02150 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 3.0e-157
Identity = 288/420 (68.57%), Postives = 340/420 (80.95%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKI-------GRGAGADDESASIR 240
           MAG+TGG  SSN SP P P KILLAKPGLVT G++SSK+       G G GA+DES S+R
Sbjct: 1   MAGATGGAGSSNPSPAPAP-KILLAKPGLVTTGSVSSKLIRSGAAGGGGGGAEDESVSLR 60

Query: 241 SRLPSLGSLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSS 300
           SRLP +GSLNLLSDSW+FH DRFLPFLT+NT+F VVG+IGPPGVGKSTIMNE+YGFDGSS
Sbjct: 61  SRLPPIGSLNLLSDSWEFHTDRFLPFLTDNTDFTVVGVIGPPGVGKSTIMNELYGFDGSS 120

Query: 301 PGMLPPFPILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTI 360
           PGMLPPF I SED+RAMARHCT+GIEPRIS+ER+ILLDTQPVFSPSVLAE+MRPDGSSTI
Sbjct: 121 PGMLPPFAIQSEDIRAMARHCTVGIEPRISAERLILLDTQPVFSPSVLAEMMRPDGSSTI 180

Query: 361 SVISGESLSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPD 420
           SV+ GESLS+ELAHELM IQLG+LLASIC+I+LVIS+G HD+NMWRLMLTVDLLKHG+PD
Sbjct: 181 SVLGGESLSSELAHELMGIQLGVLLASICHILLVISDGVHDINMWRLMLTVDLLKHGIPD 240

Query: 421 PSSSVFSHTQNSNVGSEKEHKDKV-SASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFA 480
            SS   SH+QNSN+GS+KE KDKV    EEY+A PIFVH K+ D D+ P N + L++A A
Sbjct: 241 LSSLTPSHSQNSNLGSDKEGKDKVLEGGEEYLAAPIFVHTKLRDQDITPRNFVHLRKALA 300

Query: 481 QCFKTASFMGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYE 540
           Q F +++F+  K K      E L+SSV P+  + D+D     L  +P ++K DS R QYE
Sbjct: 301 QFFSSSTFV--KEKCGNTTKEHLVSSVPPNMPSTDLDSTLPNLFLVPCKSKVDSPRAQYE 360

Query: 541 SFNLALWKLRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           S+   LWKLRDQVLSMN  SF+RT+SERDWL+NS KIWELVK+SPI+ EY +TLQSS  F
Sbjct: 361 SYTSMLWKLRDQVLSMNCPSFARTISERDWLRNSAKIWELVKNSPIIAEYCKTLQSSGMF 417

[Close]

BLAST of Cp4.1LG08g05470 vs. TrEMBL
Match: A0A067JD58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00558 PE=4 SV=1)

HSP 1 Score: 560.1 bits (1442), Expect = 3.3e-156
Identity = 287/412 (69.66%), Postives = 335/412 (81.31%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGST G  SSN SP PP PKILLAKPGLVT G +  K GR AGA+DE+ S RSRLP++G
Sbjct: 1   MAGSTSGTGSSNPSPAPPAPKILLAKPGLVTSGPVVGKFGR-AGAEDETVSHRSRLPAIG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSW+FHIDRFLPFLTENT+F VVG+IGPPGVGKSTIMNE+YGFDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWEFHIDRFLPFLTENTDFTVVGVIGPPGVGKSTIMNELYGFDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
            I +ED RAMARHC++GIEPRIS+ER+ILLDTQPVFSPS+L+E+MRPDGSSTISV+SGE+
Sbjct: 121 TIQTEDNRAMARHCSVGIEPRISAERLILLDTQPVFSPSILSEMMRPDGSSTISVLSGEN 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHELM+IQLG+LLASIC+IVLV+S+G HD +MW LMLTVDLLKHG+PDPSS   S
Sbjct: 181 LSAELAHELMAIQLGVLLASICHIVLVVSDGVHDDDMWHLMLTVDLLKHGIPDPSSLTPS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H Q+SN G EKE+KDK+   EEYMATP+FVH K+ D D  P   +QLK+A A  F ++SF
Sbjct: 241 HMQSSNAGPEKENKDKIIEGEEYMATPVFVHTKLHDQDFTPITSMQLKKALALYFSSSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           + +K K+     E L SSV   TR  DV      L  IP+ N+DD  R Q+ESF  ALWK
Sbjct: 301 VREKGKNK--GKEDLSSSVASTTRCNDVHFSPLNLFLIPSNNRDDLPRPQHESFISALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           LRD+VLSM+  SF++TVSERDWLKNS KIWELVKSS I+ EY+RTLQ+S  F
Sbjct: 361 LRDEVLSMDCPSFAKTVSERDWLKNSAKIWELVKSSAIIAEYSRTLQNSGMF 409

[Close]

BLAST of Cp4.1LG08g05470 vs. TrEMBL
Match: A0A0D2NJP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G005800 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 2.6e-145
Identity = 273/412 (66.26%), Postives = 319/412 (77.43%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGST G  SSN S  P  PKILLAKP   + G +  K GRG G +DE+A  R+RLP +G
Sbjct: 1   MAGSTSGTTSSNPSLNPSAPKILLAKP---SAGPVPGKFGRGGG-EDETAPHRARLPPVG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSW+FHIDRFLPFLTENT+FKVVGIIGPPG GKSTIMNE+YGFDG SPGMLPPF
Sbjct: 61  SLNLLSDSWEFHIDRFLPFLTENTDFKVVGIIGPPGAGKSTIMNELYGFDGVSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
            I SE+ RAMARHCT+GIEPRIS+ER+ILLDTQ VFSPSVL+EIMRPDGSST+SV+SGES
Sbjct: 121 AIQSEETRAMARHCTVGIEPRISAERLILLDTQSVFSPSVLSEIMRPDGSSTVSVLSGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHE+M+IQLG+LLASIC+I+LV+SEG HD +MW +MLTVDLLKHG+PDPS     
Sbjct: 181 LSAELAHEIMNIQLGVLLASICHILLVVSEGVHDNSMWHMMLTVDLLKHGIPDPSCITPL 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H+Q+S +G +KE KDKV   EEY+ TP+FVH K++D DL P NI+Q K+A  Q F ++SF
Sbjct: 241 HSQSSTLGLQKEGKDKVHEVEEYIGTPVFVHTKLQDQDLSPPNIVQTKKALLQYFGSSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           M  K  +       +      DT  LD       LL IP +NKDDS   Q ES+  +LWK
Sbjct: 301 MRRKCANKPTDQPAMTQINTKDTELLD-------LLMIPYKNKDDSPEAQCESYVSSLWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           LRDQVLSMN  SF+R VSERDWLK+S KIWELVKSSPI+ EY+RTL SS  F
Sbjct: 361 LRDQVLSMNCPSFTRNVSERDWLKSSAKIWELVKSSPIIAEYSRTLLSSGMF 401

[Close]

BLAST of Cp4.1LG08g05470 vs. TrEMBL
Match: A0A061DJ65_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001534 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 1.0e-144
Identity = 270/412 (65.53%), Postives = 320/412 (77.67%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGS GG  SSN SP P  PKILLAKP   + G +  K GRG G +DE+A  R+RLP +G
Sbjct: 1   MAGSIGGTGSSNPSPNPSAPKILLAKP---SAGPVPGKFGRG-GVEDETAPHRARLPPVG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSW+FHIDRFLPFLTENT+F V+GIIGPPGVGKS IMNE+YGFDG SPGMLPPF
Sbjct: 61  SLNLLSDSWEFHIDRFLPFLTENTDFMVIGIIGPPGVGKSMIMNELYGFDGISPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
            I SED RAMARHCT+GIEPRIS+ER+ILLDTQ VFSPSVL+E+MRPDGSST+SV+SGES
Sbjct: 121 AIQSEDTRAMARHCTVGIEPRISAERLILLDTQSVFSPSVLSEMMRPDGSSTVSVLSGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHE+M+IQLG+LLASIC+I+LV+SEG HD NMW LMLTVDLLKHG+PDPS     
Sbjct: 181 LSAELAHEIMNIQLGVLLASICHILLVVSEGVHDNNMWHLMLTVDLLKHGIPDPSLITPP 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H+Q+S VG +KE KD V+  EEYMATP+FVH K++D DL P NI+Q+++A  + F ++SF
Sbjct: 241 HSQSSTVGPDKEGKDNVNEGEEYMATPVFVHTKLQDQDLSPPNIVQMRKALLRYFSSSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           M  K  + K+ ++               D E   L  IP ++KDDS   Q ES+  +LWK
Sbjct: 301 MRHKCGNTKINAK---------------DTELLNLFVIPYKDKDDSPSAQCESYVSSLWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           LRDQVLSM   SF+R VSERDWLK+S KIWELVKSSPI+ EY+RTL SS  F
Sbjct: 361 LRDQVLSMTCPSFTRNVSERDWLKSSAKIWELVKSSPIISEYSRTLLSSGMF 393

[Close]

BLAST of Cp4.1LG08g05470 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 212.2 bits (539), Expect = 8.5e-55
Identity = 110/136 (80.88%), Postives = 117/136 (86.03%), Query Frame = 1


Query: 33  PSTTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGL 169
           HGR+EALA AAREHGL
Sbjct: 153 HGRIEALAAAAREHGL 168

[Close]

BLAST of Cp4.1LG08g05470 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 84.7 bits (208), Expect = 2.1e-16
Identity = 63/167 (37.72%), Postives = 88/167 (52.69%), Query Frame = 1


Query: 5   IAPLSFLGTSILGVSYSQNLRIPPHLNFP-STTSSSGRHSLVIEAKATTRREDRAARHSR 64
           +A L+ L T    VS     R+ P+  FP   T+ S     VIEA+  TR E    R+ R
Sbjct: 1   MAALTSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRR 60

Query: 65  IRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEV 124
            RKK  GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      T    IE 
Sbjct: 61  SRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEA 120

Query: 125 AKKVGEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHGLV 170
           AK+VGE + K+ ++  I ++ ++DR G     R++A   A  +HG +
Sbjct: 121 AKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

[Close]

BLAST of Cp4.1LG08g05470 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 60.5 bits (145), Expect = 4.2e-09
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 117 SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 10  TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

[Close]

BLAST of Cp4.1LG08g05470 vs. NCBI nr
Match: gi|659077083|ref|XP_008439023.1| (PREDICTED: protein SMG9-like isoform X2 [Cucumis melo])

HSP 1 Score: 723.8 bits (1867), Expect = 2.5e-205
Identity = 370/413 (89.59%), Postives = 385/413 (93.22%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGSTG N+SSNSSP PPPPKILLAKPGLV GG ISSKIGRG GADDE+ASIRSRLPSLG
Sbjct: 1   MAGSTGANSSSNSSPAPPPPKILLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSST+SVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHELMSIQLGILLASICNIVLVISEG HDLNMW LMLTVDLLKHGLPDPSS + S
Sbjct: 181 LSAELAHELMSIQLGILLASICNIVLVISEGVHDLNMWHLMLTVDLLKHGLPDPSSPISS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H QNSNV SEKE+K+K S SEEY+ATPIFVHAKV+D DLVPHNILQLKRAFA  FKT+SF
Sbjct: 241 HAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQDRDLVPHNILQLKRAFAYYFKTSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           MGDK   +KV SEQLLSSVVPDTRNLDVDGEDRRLL IPNRNKDDSTRGQYESF LALWK
Sbjct: 301 MGDKF--EKVHSEQLLSSVVPDTRNLDVDGEDRRLLLIPNRNKDDSTRGQYESFKLALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRFV 594
           LRDQVLSM G SF RTVSERDWLKNS+KIWE VKSSPIVMEYARTLQSS+R +
Sbjct: 361 LRDQVLSMKGASFPRTVSERDWLKNSLKIWESVKSSPIVMEYARTLQSSERML 411

[Close]

BLAST of Cp4.1LG08g05470 vs. NCBI nr
Match: gi|449459814|ref|XP_004147641.1| (PREDICTED: protein SMG9-like [Cucumis sativus])

HSP 1 Score: 723.4 bits (1866), Expect = 3.2e-205
Identity = 372/412 (90.29%), Postives = 383/412 (92.96%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGSTG N+SSNSSP PPPPKILLAKPGLV GG I+SKIGRGAGADDE ASIRSRLPSLG
Sbjct: 1   MAGSTGANSSSNSSPAPPPPKILLAKPGLVPGGPINSKIGRGAGADDEPASIRSRLPSLG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSST+SVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
            SAELAHELMSIQLGILLASICNIVLVISEG HDLNMW LMLTVDLLKHGLPDPSS + S
Sbjct: 181 PSAELAHELMSIQLGILLASICNIVLVISEGVHDLNMWHLMLTVDLLKHGLPDPSSPISS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H QNSNV SEKE+K+K S SEEYMATPIFVHAKV+D DLVP NILQLKRAFA  FKT+SF
Sbjct: 241 HAQNSNVASEKEYKEKTSTSEEYMATPIFVHAKVQDRDLVPQNILQLKRAFAYYFKTSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           MGDK   +KV SEQLLSSVVPDTRNLDVDGEDRRLL IPNRNKDDSTRGQYESFNLALWK
Sbjct: 301 MGDKF--EKVHSEQLLSSVVPDTRNLDVDGEDRRLLLIPNRNKDDSTRGQYESFNLALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           LRDQVLSMNG SF RTVSERDWLKNSVKIWE VKSSPIVMEYARTLQSS  F
Sbjct: 361 LRDQVLSMNGASFPRTVSERDWLKNSVKIWESVKSSPIVMEYARTLQSSGMF 410

[Close]

BLAST of Cp4.1LG08g05470 vs. NCBI nr
Match: gi|659077089|ref|XP_008439027.1| (PREDICTED: protein SMG9-like isoform X5 [Cucumis melo])

HSP 1 Score: 723.4 bits (1866), Expect = 3.2e-205
Identity = 371/413 (89.83%), Postives = 384/413 (92.98%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGSTG N+SSNSSP PPPPKILLAKPGLV GG ISSKIGRG GADDE+ASIRSRLPSLG
Sbjct: 1   MAGSTGANSSSNSSPAPPPPKILLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSST+SVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHELMSIQLGILLASICNIVLVISEG HDLNMW LMLTVDLLKHGLPDPSS + S
Sbjct: 181 LSAELAHELMSIQLGILLASICNIVLVISEGVHDLNMWHLMLTVDLLKHGLPDPSSPISS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H QNSNV SEKE+K+K S SEEY+ATPIFVHAKV+D DLVPHNILQLKRAFA  FKT+SF
Sbjct: 241 HAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQDRDLVPHNILQLKRAFAYYFKTSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           MGDK   +KV SEQLLSSVVPDTRNLDVDGEDRRLL IPNRNKDDSTRGQYESF LALWK
Sbjct: 301 MGDKF--EKVHSEQLLSSVVPDTRNLDVDGEDRRLLLIPNRNKDDSTRGQYESFKLALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRFV 594
           LRDQVLSM G SF RTVSERDWLKNS+KIWE VKSSPIVMEYARTLQSSD  V
Sbjct: 361 LRDQVLSMKGASFPRTVSERDWLKNSLKIWESVKSSPIVMEYARTLQSSDNEV 411

[Close]

BLAST of Cp4.1LG08g05470 vs. NCBI nr
Match: gi|659077097|ref|XP_008439031.1| (PREDICTED: protein SMG9-like isoform X9 [Cucumis melo])

HSP 1 Score: 723.0 bits (1865), Expect = 4.2e-205
Identity = 370/410 (90.24%), Postives = 383/410 (93.41%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGSTG N+SSNSSP PPPPKILLAKPGLV GG ISSKIGRG GADDE+ASIRSRLPSLG
Sbjct: 1   MAGSTGANSSSNSSPAPPPPKILLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSST+SVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHELMSIQLGILLASICNIVLVISEG HDLNMW LMLTVDLLKHGLPDPSS + S
Sbjct: 181 LSAELAHELMSIQLGILLASICNIVLVISEGVHDLNMWHLMLTVDLLKHGLPDPSSPISS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H QNSNV SEKE+K+K S SEEY+ATPIFVHAKV+D DLVPHNILQLKRAFA  FKT+SF
Sbjct: 241 HAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQDRDLVPHNILQLKRAFAYYFKTSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           MGDK   +KV SEQLLSSVVPDTRNLDVDGEDRRLL IPNRNKDDSTRGQYESF LALWK
Sbjct: 301 MGDKF--EKVHSEQLLSSVVPDTRNLDVDGEDRRLLLIPNRNKDDSTRGQYESFKLALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSD 591
           LRDQVLSM G SF RTVSERDWLKNS+KIWE VKSSPIVMEYARTLQSSD
Sbjct: 361 LRDQVLSMKGASFPRTVSERDWLKNSLKIWESVKSSPIVMEYARTLQSSD 408

[Close]

BLAST of Cp4.1LG08g05470 vs. NCBI nr
Match: gi|659077095|ref|XP_008439030.1| (PREDICTED: protein SMG9-like isoform X8 [Cucumis melo])

HSP 1 Score: 722.2 bits (1863), Expect = 7.2e-205
Identity = 370/412 (89.81%), Postives = 383/412 (92.96%), Query Frame = 1


Query: 181 MAGSTGGNASSNSSPTPPPPKILLAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 240
           MAGSTG N+SSNSSP PPPPKILLAKPGLV GG ISSKIGRG GADDE+ASIRSRLPSLG
Sbjct: 1   MAGSTGANSSSNSSPAPPPPKILLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 241 SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 300
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 301 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 360
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSST+SVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 361 LSAELAHELMSIQLGILLASICNIVLVISEGAHDLNMWRLMLTVDLLKHGLPDPSSSVFS 420
           LSAELAHELMSIQLGILLASICNIVLVISEG HDLNMW LMLTVDLLKHGLPDPSS + S
Sbjct: 181 LSAELAHELMSIQLGILLASICNIVLVISEGVHDLNMWHLMLTVDLLKHGLPDPSSPISS 240

Query: 421 HTQNSNVGSEKEHKDKVSASEEYMATPIFVHAKVEDPDLVPHNILQLKRAFAQCFKTASF 480
           H QNSNV SEKE+K+K S SEEY+ATPIFVHAKV+D DLVPHNILQLKRAFA  FKT+SF
Sbjct: 241 HAQNSNVASEKEYKEKTSTSEEYLATPIFVHAKVQDRDLVPHNILQLKRAFAYYFKTSSF 300

Query: 481 MGDKVKSDKVQSEQLLSSVVPDTRNLDVDGEDRRLLFIPNRNKDDSTRGQYESFNLALWK 540
           MGDK   +KV SEQLLSSVVPDTRNLDVDGEDRRLL IPNRNKDDSTRGQYESF LALWK
Sbjct: 301 MGDKF--EKVHSEQLLSSVVPDTRNLDVDGEDRRLLLIPNRNKDDSTRGQYESFKLALWK 360

Query: 541 LRDQVLSMNGTSFSRTVSERDWLKNSVKIWELVKSSPIVMEYARTLQSSDRF 593
           LRDQVLSM G SF RTVSERDWLKNS+KIWE VKSSPIVMEYARTLQSS  F
Sbjct: 361 LRDQVLSMKGASFPRTVSERDWLKNSLKIWESVKSSPIVMEYARTLQSSGMF 410

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	1.5e-53	80.88	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	5.2e-46	60.48	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	7.3e-32	65.52	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	7.3e-32	65.52	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOTN	2.4e-30	63.79	50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=...	[more]

BLAST of Cp4.1LG08g05470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L618_CUCSA	2.3e-205	90.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171800 PE=4 SV=1	[more]
D7T7Q7_VITVI	3.0e-157	68.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02150 PE=4 SV=...	[more]
A0A067JD58_JATCU	3.3e-156	69.66	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00558 PE=4 SV=1	[more]
A0A0D2NJP0_GOSRA	2.6e-145	66.26	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G005800 PE=4 SV=1	[more]
A0A061DJ65_THECC	1.0e-144	65.53	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_001534 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g05470 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	8.5e-55	80.88	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	2.1e-16	37.72	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	4.2e-09	73.68	structural constituent of ribosome	[more]

BLAST of Cp4.1LG08g05470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077083\|ref\|XP_008439023.1\|	2.5e-205	89.59	PREDICTED: protein SMG9-like isoform X2 [Cucumis melo]	[more]
gi\|449459814\|ref\|XP_004147641.1\|	3.2e-205	90.29	PREDICTED: protein SMG9-like [Cucumis sativus]	[more]
gi\|659077089\|ref\|XP_008439027.1\|	3.2e-205	89.83	PREDICTED: protein SMG9-like isoform X5 [Cucumis melo]	[more]
gi\|659077097\|ref\|XP_008439031.1\|	4.2e-205	90.24	PREDICTED: protein SMG9-like isoform X9 [Cucumis melo]	[more]
gi\|659077095\|ref\|XP_008439030.1\|	7.2e-205	89.81	PREDICTED: protein SMG9-like isoform X8 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR005484	Ribosomal_L18
IPR004389	Ribosomal_L18_bac-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0071669	plant-type cell wall organization or biogenesis
biological_process	GO:0040007	growth
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048513	animal organ development
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0048653	anther development
biological_process	GO:0008150	biological_process
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05470.1	Cp4.1LG08g05470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 2
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 54..168 score: 2.4
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..168 score: 1.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 268..412 score: 4.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 254..295 score: 1.14E-5coord: 267..388 score: 1.4
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 70..168 score: 2.1
None	No IPR available	PANTHER	PTHR14270	UNCHARACTERIZED	coord: 197..593 score: 1.1E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 53..168 score: 1.13

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g05470	Cucsa.252030	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g05470	CmaCh14G015460	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g05470	CmaCh06G015960	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g05470	CmoCh06G015910	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g05470	CmoCh14G015820	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g05470	Cla021845	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g05470	Csa3G171790	Cucumber (Chinese Long) v2	cpecuB859
Cp4.1LG08g05470	MELO3C006766	Melon (DHL92) v3.5.1	cpemeB813
Cp4.1LG08g05470	ClCG05G007000	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g05470	CSPI03G15510	Wild cucumber (PI 183967)	cpecpiB861
Cp4.1LG08g05470	Lsi05G013710	Bottle gourd (USVL1VR-Ls)	cpelsiB715
Cp4.1LG08g05470	MELO3C006766.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g05470	CsaV3_3G015690	Cucumber (Chinese Long) v3	cpecucB1056
Cp4.1LG08g05470	Bhi01G000838	Wax gourd	cpewgoB1110
Cp4.1LG08g05470	CsGy3G015560	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g05470	Carg15518	Silver-seed gourd	carcpeB0974
Cp4.1LG08g05470	Carg19585	Silver-seed gourd	carcpeB0396

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g05470	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g05470	Cucurbita maxima (Rimu)	cmacpeB412
Cp4.1LG08g05470	Cucurbita moschata (Rifu)	cmocpeB373
Cp4.1LG08g05470	Bottle gourd (USVL1VR-Ls)	cpelsiB697
Cp4.1LG08g05470	Watermelon (97103) v1	cpewmB853
Cp4.1LG08g05470	Melon (DHL92) v3.5.1	cpemeB793