CmaCh06G015960 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G015960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L18
Location	Cma_Chr06 : 9949548 .. 9952493 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGTACACAAAAGGATAAGGCAATTCTCAAGAAGAAAAGAAACGAACCAGTAGAGCCTTCGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGAAGAGAAGCAGGACGACAATGTCTTCAGCCACTGCTTTTATATCGTTTCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCGTTCCTCCTCATCTCAATTTTCCGTCATCCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGTCATTCTCGTATCAGGAAGAAGGTAATCATCGAGTCCTTATTCCCCTATTTATACCGCCTTCCCTCCCCTTCGCGTACTTTGTTATGCTAATTTGGCGTTTCTCTCGTTCCACATTGTTCTGCGCCCTAAAATTTTTCAGAGATTCACCGGAAATGGAGGTAGGTTGGGATTATTCTTGAAATGAGCTATCTAGGTTTCGTTTGTTTTAATTACTCCCGGGAATTACTCGGTGTTTCTCGGTTCTTATTGCAAGTGTGTGTTGTTGTTTTACTTCTTTGTGGATTTTGTTTCATTCTAGGTATCTATTTATTGTGAACTTCCAAAGGATTGATTTAATAATTCGTGAACTCGTCGTTTATTTTAGAAGTTCTGGTTAGACTAGCTTGGAGGTGTACTTGTTTCTTAGAATTTTGTCATTGTTCCACTACCAAGGTCCTGGATTTCTGAAGATTGAGGAAAAGAGGGAAAAGAACAATGAGCTTGTTTATTTCTCATTGCAGGGAGTCAAAATTCAAAATAGAAATATTTTATTGTTCTCAGCATCAAATGATGTTCATGAAAGCTGTAATTGGAATTTGTTTCAAGATAAGATCTGCGGAGACTTACAGTTCTTTGGGCCTCAGATGACTTGAAAGTAAATTTACTCATTGGAGAAGCTAAAATTTATAGAAAAATGTAGCTTGTACAAAGAATAGATAGGAAACCAGAGTTTGGAGCCTAGAACACAAAACAAGGTAAGAAAGATATCCCACCTAGTATTTATTCTTTTAGTTAGGAAACAAGCCTCATATATGGAACCACAATCGATTACAGCCAAAATGTGGGATGGTAACTGATCTCTCAAAACTGGAGGCTAAAGATGGTACAAAAATGGATCATTCTACACATAAATGCCTTTATGAGATCCCTCATTGATTGGAGATGATAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTCACTAGCAGACGCGTTTTAAAACCTTGAGGGGAAGCTCAAAGAGGACAATATTTACTAGCGGTGGGATTGGACAATTACAAATGGTACCAGAGCCAGACATCGGGCAGTGTACCAACGAGGACGCTAGGCCTCCAAGGGGGTGGATTGTGAGATCAACGAGGACGCTAGGCCTCCAAGGGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTGGTAGACTTGTTTTAAAATCATGAGGCTGACTGTGATACTGGAAACCTCTCCCTAGTAGACTTGTTTTAAAATCATGAGGCTGACGGTGATACGTAACGGACCAAAGCGGACAATATCTGCTAGTAGTGGGCTTGAGCTGTTACAAAAACACTACACATCCTTGACCTGACGCTTGGGAAGGTGACATTTTCAATTTTTTCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTGTCAAATGGGTATAAATGGCTATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGGAATCTGGGAGATTGAATCCCTTTAGAACAGTACTGAGTTCAGAATTGTTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCTTGTGCCTCAGGTTGAAGGAACAACTGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGTGAGTTCACTACAACTAAGAATTAATTCAATTATGTTTAGCTTTCCTCCTTCCCCTTCCAAACTCTTGTTGCATTAGCTTGATGTCTATGTAGATCTTCTTACTCCTTCAAATAAGAAAGAATCTATAATGGAGACCGTACCGTTAACATATATTGTCCTCTTTAGAAAACTAAGTTTAGTTATCGTACATAGCCTTGCTGGAACAGATTTGTTCATAGGTTCTATCTCTATGCCCTTGAGCTTTAGTCATGCATGTAGAACTACAAGCCTAGGGATGTGATTAAGTTTAGAAACTAAACAGACATCACGTAATTTACGGTCGTAGCCACACCTTTAGAAGCAAAATTTTTGTTATATGTGGATAATACGGTTGCAGGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGGGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTGTGTTTTTCATTGTCTTCTGTATGGTTTGCCGTAACAGTGCCATCAGAAGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTGTTTCACTTGAAATTAAGAGGGAAATTATTCGTTCATTCATCATCTTTGTTCAAAAACAAACATTACATTGAATCTATCATTTGAAAGTATCGAAGTCAGTCAGAAGAAATGGTTATTAGCCTATCTTTTGAATGTATTTTTCTAGTGTGACATATTTGAATATCTAACCTCTCAGTGGATGATA

mRNA sequence

CCGGTACACAAAAGGATAAGGCAATTCTCAAGAAGAAAAGAAACGAACCAGTAGAGCCTTCGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGAAGAGAAGCAGGACGACAATGTCTTCAGCCACTGCTTTTATATCGTTTCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCGTTCCTCCTCATCTCAATTTTCCGTCATCCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGTCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACTGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGGGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTGTGTTTTTCATTGTCTTCTGTATGGTTTGCCGTAACAGTGCCATCAGAAGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTGTTTCACTTGAAATTAAGAGGGAAATTATTCGTTCATTCATCATCTTTGTTCAAAAACAAACATTACATTGAATCTATCATTTGAAAGTATCGAAGTCAGTCAGAAGAAATGGTTATTAGCCTATCTTTTGAATGTATTTTTCTAGTGTGACATATTTGAATATCTAACCTCTCAGTGGATGATA

Coding sequence (CDS)

ATGTCTTCAGCCACTGCTTTTATATCGTTTCTCGGAAGTTCCATTCTAGGCGTCTCTTATTCACAGAATCTTCGCGTTCCTCCTCATCTCAATTTTCCGTCATCCACTTCAAGTTCCGGCCGACATTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCTGCTCGTCATTCTCGTATCAGGAAGAAGGTTGAAGGAACAACTGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGGGGATATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGA

Protein sequence

MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF

Homology

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BLAST of CmaCh06G015960 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.9e-55
Identity = 112/138 (81.16%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 33  PSSTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P S+SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLVF 171
           HGR+EALA AAREHGL F
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of CmaCh06G015960 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-47
Identity = 100/162 (61.73%), Postives = 126/162 (77.78%), Query Frame = 1


Query: 12  GSSILGVSYSQNLRVP-PHLNFPSSTSSSGRHSLVIEAKA--TTRREDRAARHSRIRKKV 71
           G+     + S +L +P P ++ PS + +  R SLV+ AK   +T + DR ARH R+RKKV
Sbjct: 9   GARAFAATVSGSLGIPIPAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKV 68

Query: 72  EGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVG 131
            GTTERPRLSVFRSNKHLY QVIDD+K  TL + STM KS+S+ L+Y++GPT+EVA+K+G
Sbjct: 69  SGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIG 128

Query: 132 EAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           E IAKSCLEKGITKV FDRGG+ YHGR++ALADAARE+GL F
Sbjct: 129 EVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170

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BLAST of CmaCh06G015960 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-33
Identity = 77/118 (65.25%), Postives = 88/118 (74.58%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           LD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CmaCh06G015960 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-33
Identity = 77/118 (65.25%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           LD T+   IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CmaCh06G015960 vs. Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 75/118 (63.56%), Postives = 87/118 (73.73%), Query Frame = 1


Query: 53  RREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD K  T+ + ST+ K  S  
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDKEFS-- 66

Query: 113 LDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           LD T+   I+ AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL F
Sbjct: 67  LDSTNN--IDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CmaCh06G015960 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.6e-74
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60
           M+S TA  SFL +S L VSYSQN+   PHL+FP +TSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CmaCh06G015960 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 4.2e-56
Identity = 123/168 (73.21%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   TAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSG--RHSLVIEAKATTRREDRAARHS 64
           +A ISFLG++I     SQ L + P L   ++T S      SLV+EAKATT+REDR ARH 
Sbjct: 2   SASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYT+GPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           VAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

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BLAST of CmaCh06G015960 vs. TrEMBL
Match: A0A0K9QQ60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 122/173 (70.52%), Postives = 141/173 (81.50%), Query Frame = 1


Query: 1   MSSATAFISFLGSSILGVSYS--QNLRVPPH-LNFPSSTSSSGRHSLVIEAKATTRREDR 60
           M++AT+ +SF  S++   S S  Q L +PP  +NF   T        +I+AKA TRREDR
Sbjct: 1   MAAATS-LSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDR 60

Query: 61  AARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTS 120
            ARH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DY++
Sbjct: 61  TARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSA 120

Query: 121 GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           GPT+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGLVF
Sbjct: 121 GPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

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BLAST of CmaCh06G015960 vs. TrEMBL
Match: W9QXJ8_9ROSA (50S ribosomal protein L18 OS=Morus notabilis GN=L484_010458 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.2e-54
Identity = 119/163 (73.01%), Postives = 133/163 (81.60%), Query Frame = 1


Query: 8   ISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAARHSRIRKK 67
           +SF  S+++  S    L+V   L+FP         SLV+EAKA TR+EDR ARHSRIRKK
Sbjct: 3   LSFFQSAVVP-SQQLQLQVGIGLSFPRLQRVQ---SLVVEAKAKTRQEDRIARHSRIRKK 62

Query: 68  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKV 127
           VEGT ERPRLSVFRSNKHLYVQVIDD+KM TLAA STMQK+ISE   YTSGPT+EVAKK+
Sbjct: 63  VEGTPERPRLSVFRSNKHLYVQVIDDTKMRTLAAASTMQKAISEEFSYTSGPTLEVAKKI 122

Query: 128 GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           GE IAK+CLEKGITKVAFDRGGYPYHGRVEA+ADAAREHGL F
Sbjct: 123 GEVIAKTCLEKGITKVAFDRGGYPYHGRVEAIADAAREHGLKF 161

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BLAST of CmaCh06G015960 vs. TrEMBL
Match: A0A068VFP3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003540001 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-53
Identity = 113/145 (77.93%), Postives = 125/145 (86.21%), Query Frame = 1


Query: 26  VPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKH 85
           +P  L   S ++    ++L IEAKA TRR DR ARHSRIRKKVEGT ERPRLSVFRSNKH
Sbjct: 24  LPSPLRLSSFSTQWQPNALSIEAKAGTRRVDRTARHSRIRKKVEGTPERPRLSVFRSNKH 83

Query: 86  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAF 145
           LYVQVIDDSKMHTLA+ STMQK IS+ L+Y+S PTI+VAKKVG+AIAKSCLEKGITKVAF
Sbjct: 84  LYVQVIDDSKMHTLASASTMQKPISDDLNYSSAPTIDVAKKVGKAIAKSCLEKGITKVAF 143

Query: 146 DRGGYPYHGRVEALADAAREHGLVF 171
           DRGGYPYHGR+EALADAAREHGL F
Sbjct: 144 DRGGYPYHGRIEALADAAREHGLQF 168

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BLAST of CmaCh06G015960 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 215.7 bits (548), Expect = 2.2e-56
Identity = 112/138 (81.16%), Postives = 118/138 (85.51%), Query Frame = 1


Query: 33  PSSTSSSGRHSLVIEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P S+SS    S+V+EAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLVF 171
           HGR+EALA AAREHGL F
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of CmaCh06G015960 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-16
Identity = 62/164 (37.80%), Postives = 86/164 (52.44%), Query Frame = 1


Query: 8   ISFLGSSILGVSYSQNLRVPPHLNFPSS-TSSSGRHSLVIEAKATTRREDRAARHSRIRK 67
           + F  S ILG       R+ P+  FP   T+ S     VIEA+  TR E    R+ R RK
Sbjct: 10  VQFRVSDILGT------RLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRK 69

Query: 68  KVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIEVAKK 127
           K  GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      T    IE AK+
Sbjct: 70  KFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKR 129

Query: 128 VGEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHGLV 170
           VGE + K+ ++  I ++ ++DR G     R++A   A  +HG +
Sbjct: 130 VGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

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BLAST of CmaCh06G015960 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 117 SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 10  TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

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BLAST of CmaCh06G015960 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 292.7 bits (748), Expect = 4.0e-76
Identity = 152/170 (89.41%), Postives = 161/170 (94.71%), Query Frame = 1


Query: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60
           M+S TA  SFLG+S L VSYSQN+   PHL+FP++TSSSGRHSLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CmaCh06G015960 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.8e-74
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60
           M+S TA  SFL +S L VSYSQN+   PHL+FP +TSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CmaCh06G015960 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 226.9 bits (577), Expect = 2.7e-56
Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   TAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSG--RHSLVIEAKATTRREDRAARHS 64
           +A ISFLG++I     SQ L + P L   ++T S      SLV+EAKATT+REDR ARH 
Sbjct: 2   SASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +SE  DYT+GPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSEEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           VAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

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BLAST of CmaCh06G015960 vs. NCBI nr
Match: gi|596288596|ref|XP_007225963.1| (hypothetical protein PRUPE_ppa012509mg [Prunus persica])

HSP 1 Score: 225.7 bits (574), Expect = 6.1e-56
Identity = 123/168 (73.21%), Postives = 138/168 (82.14%), Query Frame = 1


Query: 5   TAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSG--RHSLVIEAKATTRREDRAARHS 64
           +A ISFLG++I     SQ L + P L   ++T S      SLV+EAKATT+REDR ARH 
Sbjct: 2   SASISFLGTAIAS---SQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYT+GPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           VAKKVGE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

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BLAST of CmaCh06G015960 vs. NCBI nr
Match: gi|694359441|ref|XP_009359828.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 223.8 bits (569), Expect = 2.3e-55
Identity = 123/168 (73.21%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 5   TAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSG--RHSLVIEAKATTRREDRAARHS 64
           +A +SFL SS       Q L + P L   ++T S      SLV+EAKATT+REDR ARH+
Sbjct: 2   SASLSFLASS-------QQLWLRPQLVGVAATPSPRPQSRSLVVEAKATTKREDRTARHT 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPTIE 124
           RIRKKVEGT ERPRL+VFRS+KH+YVQVIDDSKMHTLA+ STMQK ISE  DYTSGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSHKHIYVQVIDDSKMHTLASASTMQKPISEEFDYTSGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 171
           VAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 122 VAKKVGEVIAKSCLEKGISKVAFDRGGYPYHGRVQALADAAREHGLQF 162

The following BLAST results are available for this feature:

BLAST of CmaCh06G015960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	3.9e-55	81.16	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	5.1e-47	61.73	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	3.2e-33	65.25	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	3.2e-33	65.25	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOTN	1.0e-31	63.56	50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=...	[more]

BLAST of CmaCh06G015960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A4_CUCSA	2.6e-74	87.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1	[more]
M5XM31_PRUPE	4.2e-56	73.21	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1	[more]
A0A0K9QQ60_SPIOL	1.8e-54	70.52	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1	[more]
W9QXJ8_9ROSA	5.2e-54	73.01	50S ribosomal protein L18 OS=Morus notabilis GN=L484_010458 PE=3 SV=1	[more]
A0A068VFP3_COFCA	2.0e-53	77.93	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00003540001 PE=3 SV=1	[more]

BLAST of CmaCh06G015960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	2.2e-56	81.16	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	1.7e-16	37.80	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	1.2e-09	73.68	structural constituent of ribosome	[more]

BLAST of CmaCh06G015960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077079\|ref\|XP_008439021.1\|	4.0e-76	89.41	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|449459812\|ref\|XP_004147640.1\|	3.8e-74	87.65	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus]	[more]
gi\|645231256\|ref\|XP_008222310.1\|	2.7e-56	73.81	PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]	[more]
gi\|596288596\|ref\|XP_007225963.1\|	6.1e-56	73.21	hypothetical protein PRUPE_ppa012509mg [Prunus persica]	[more]
gi\|694359441\|ref\|XP_009359828.1\|	2.3e-55	73.21	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004389	Ribosomal_L18_bac-type
IPR005484	Ribosomal_L18

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0048653	anther development
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0010015	root morphogenesis
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015960.1	CmaCh06G015960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 2
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 54..170 score: 5.9
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..170 score: 3.3
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 70..170 score: 5.0
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 47..170 score: 1.4
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 53..168 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G015960	Cucsa.252040	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G015960	Cla021845	Watermelon (97103) v1	cmawmB798
CmaCh06G015960	Csa3G171790	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G015960	MELO3C006766	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G015960	ClCG05G007000	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G015960	CSPI03G15510	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G015960	CmoCh06G015910	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G015960	CmoCh14G015820	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G015960	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	cmalsiB765
CmaCh06G015960	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G015960	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	cmacpeB853
CmaCh06G015960	MELO3C006766.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G015960	CsaV3_3G015690	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G015960	Cla97C05G088670	Watermelon (97103) v2	cmawmbB856
CmaCh06G015960	Bhi01G000838	Wax gourd	cmawgoB1006
CmaCh06G015960	CsGy3G015560	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G015960	Carg15519	Silver-seed gourd	carcmaB0974
CmaCh06G015960	Carg19585	Silver-seed gourd	carcmaB0393

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G015960	CmaCh14G015460	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:

None