Cp4.1LG03g12100 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG03g12100
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	50S ribosomal protein L18
Location	Cp4.1LG03 : 10519517 .. 10523937 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAATGGAGCTCCGAAGATCGAAATGGTGAGCCTGCAACAATCTCAAACTCAATACCGCAAAATGCTCTCTCAACTTCTACAATTCATTCACCGCCAGTTCGAAGAGGATAACGTTCAATCAGCTCAGGTTTTTAGTTCCATTGTTCTTATAATCGAATACTAAATTAATTTTGAATAATTTTTTAACAAAATAAAAATATTTTTAATAATTTTAAAATATTATATATTTTTTAAAATCGCCTTTTAAATACATTAAAAAAAATTATGAGAATAAATAATTAATATATATATAATATATATATATATATATATATATATATATATATATATATAATTATACCGTCAATTGGATAGTCATTATAAGATCCACGTCGATTGGATAGAGGAACAAAGTATTCTTTATAAGGGTCTAAAAACTTCTTCCTAACAGACGCGTTTTAAAACCGCGAGGTTGATGGCGATACGTAACAAGCCAAAGTGAACGATATCTATGAGCGGTGGGCTTGAGCGATTACAAATGGTATCAGAGCCAGACACTGAGCGGTGTGCCAATGAGGACGTTGGCCCACAAAATGGGTGGGCTTGAGCGTTTACAAATGGTATTAGAGCCAGACACTGAACGGTGTGCCAATGAGGACGTTGGCTCACAAAATGGATGGGCTTGAGCGTTTACAAATGGTATCAGAGCCAGACACTGAACGATGTGCCAATGAGGACGTTGGCCCACAAAATGGGTGGGCTTTGAGCGTTTACAAATGGTATCAGAGCCAGACACTGGACGGTGTGCCAATGAGGACGTTGGCCCACAAAATGGGTGGATTGTGAGATTTTACATACCGGTTTAGGGGACGGAATAAAGTTGGGGACTAAACAGCAAAATAAGTAAAGTTGAGGGGGGAAGTTGTAAATATGTTTTTCGCTTATTTATTTATTATTTATTATTATTATTTTGGTATTAATCATCTGCACATATGGATAAGGCACCGCAACTGAAGAAGGAAAAGGAAAACGAACCAGAAGCCGTCGGAAGAAGAAGAAGAAGAGGAAGAAGAGAGAAGGAGGACGACAATGTCTTCAGCCACTGCTCCTTTATCGTTCCTCGGCAGTTCCTTTCTCGGCGGTTCTTCCTCGCAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGTCTACCACCAGACGAGAGGACCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTAATCACACACCTCATTTCCCCAATTTAAAACTTAGTACCTTTTCTCATTAGTGTCCATGGCTGCGCTAATCGGGCGATTCTCTTGATCAACTTTGTTATCTGCCTCAAATAATTTCACTGGAAATGTTGGTAGGTTATTTGAATAATTCTTGCTATGTACGCATCTGGCTTTCATCTTATTACCCTATCTTATCTGGATATTGTTTCATTTTAGGTATAAATATTGTGAACCTCCTAAGGATTGATTTGATAGTTCATCAATTCATCGTTTCTTGAGTTTAGAAGTTCTGGTTCTACTAGCTAAGAGGTGTGCTTGTTTCTTAGAAGAAATTGATGCTTCCGTGTGGATATTGTTTCACTTTAGCTTAGAGGTGCATTTGGCCAATACATGAGTCCTGGATTTCTGATGAATCCAGATGATTAATACTGTAAGTCCGTCTCTTTTGGATTTTCCTTTCAGGCTTCCCCTCACAGTTTTTAAAATGCATATGCTAGGGGAGGTTTCCACACCCCTATAAAGAATGTTTCGTTCTCGTCCCCAACAGATATGGGATCTCACAATCCACCTCCCTTCAGGGCCCAGTGTCCTCGCTGGCACACCGCTCAGTGTCCACCCCCCTTTGGGGCTCAACGTCCTCACTGTCACATTGTCTAGTGCCTGGCTTTGATACCATTTGTAACAGCCAAAGTCCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTAAAATGCGTCTGGTAGGGAGAGGTTTCCACACCTTTATAAAGAATGTTTTGTTTCCCCTTTCCAACCGATGTGAGATCTCACGTGCAAGGACTAGTACTTCCCACCGTTGTAGGAACTGGATGAGATTTAGGAGGTTTAATTTATATCAGACGCTTTGATTTATCAAGCTACTGGATAGAGTTTATTCACACTATTTTCTATGAATCAAGGATTTAGTTGAACATTTAAGGAGCAATATTGGCGTTGATGAGAGGCAGGAGAATAGGAGAACAAGAGATTGGTGAGGCAGTCATCGTCAATGGGGGAGCTTGTGAGATTGACTCTTTTCTTTTCTCATTCCTATTGATACATACAAGGTTGGGAAGCGTTTTTCTCTCTCTCATGGATTGGAATTTGATTGCAGCTTTTGTAACAACCCGAGCCCACCGCTAGAAGATATTGTCCTCTTTGGACTTTCCCTTCCGGACTTCCCCTCAAGGTTTTTAAAACGCATCTACTAGGGAAAGATTTCCACACCCTTATAAAGGATGCTTCGTTCCCCTCTCTAACTGACGTGGAATCTCACAGCTTTCTTGCATGTTAGCTTTATCTTTAGTTGTTGAATCTGGTTGTATTGGGAGATTGCTTAGGCTACACTTAGCGAGGGCAAACTCTAAACAAAACACTACGCATCCTCGACCTGCATATGACGCTTGGGAAGGTGACATTCAATTCATGCCATAGGACCTCTCTTCAACTCGAAATCTTTTAAATTCATCTAGAACGGTTAAACAAAGATCTACGAACATTTTTAATTTTCATTCTTGTAAACATCTGGATCCTTTCAGCTCTGGTTCACAGTTGTTATCTTTACTATAGCAAATTGATTCTTGCTGATATACATGTAGATAATAAAGTATAGTTTACCCATTCAATCATCTTGTGCCTCAGGTTGAAGGAACATCAGAGAGGCCAAGGTTGTCTGTGTTCCGTTCGAACAAGCATTTGTACGTTCAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGTGAGTTCACTATAACTAAGAATCAAATGTGATTGATATACCGATAATCTTTTGTTGGGTTCGATTATTTCCTTTGCGGGCTTCTCTCAAGGTTTTTAAAACGTGTTTGCTAGGAAGAGGTTTCTACATCCTTATAAGAGATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCACACCCTTATAAAGGATGTTTCATTCTCCTCCCCAACCGACGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAGCGTCCTCGTTGGCACTCGTTCTATTCTCCAATCGATGTGGAACCCCCCAATTCACCTCCTTTGGGGCTTAGCCTCCTCCGCTTGCACATCGCCCAATGTTTGGCTCTGATACCATTTGTAATGGTCTAAGCCCACCACTAGCAGATATTGTCCTCTTTGATCTTTTCCTTTCGGGCTTCCCCTTAAGGTTTATCAAACGCATCTACTAGGGAGAGGTTTCCACACACTTAAGAATGTTTCGTTCTCCCCCAACCGATATGGGATCTCACAAAATGTCTCTGCAGGGCACTGAGTTTTAGTTATTGTACATAGCTTACTTGAATAAGTTCTTCATGCCTGAGTTTTAGTTATTGTACATAGCTTACTTGAATAAGTTCTTCATGAATGCCCTCAAGCTCTAAAGAGTTATCAAACAAATTATAAATTTAGTTTTCGTATCATTCTATGCATCCTCTTACATTAACACGGTTGATTAAATGGCAACGTGGCCTATAATTTGAACAAATATTGACTGAATTAACATGTCGCACGGTCATTTAAGGCATATTATATGATTATATGTGGATAATATGGTTACAGGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGAAAATCCCTCTGTTTTTCTGTATCTTCTTGCTTGGTCTGCTGTAACAGTGCCATCAGATGACCTTGTGGATTCGAATGAGAATTGTAGTGGTTCAGCCCAAAATTAAGAAGGAATTTGTTTCTTGATTCATCTCTTCTTCAGAAATCAAATCAATGTCTTTGGACATTAAATTAAAGCTCGAGAAGTCATTCCAAACCGACTCTAAGCTTGTCCCATGTTTAATGGTTGAATAGTTTGATACTGAAAAGAGTACGCAAACCACATTTAGTTTAATGATTGAGTTTTCTAAAGCAGATTAGAATTT

mRNA sequence

CGACAATGGAGCTCCGAAGATCGAAATGGTGAGCCTGCAACAATCTCAAACTCAATACCGCAAAATGCTCTCTCAACTTCTACAATTCATTCACCGCCAGTTCGAAGAGGATAACGTTCAATCAGCTCAGTCTACCACCAGACGAGAGGACCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTGTCTGTGTTCCGTTCGAACAAGCATTTGTACGTTCAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGAAAATCCCTCTGTTTTTCTGTATCTTCTTGCTTGGTCTGCTGTAACAGTGCCATCAGATGACCTTGTGGATTCGAATGAGAATTGTAGTGGTTCAGCCCAAAATTAAGAAGGAATTTGTTTCTTGATTCATCTCTTCTTCAGAAATCAAATCAATGTCTTTGGACATTAAATTAAAGCTCGAGAAGTCATTCCAAACCGACTCTAAGCTTGTCCCATGTTTAATGGTTGAATAGTTTGATACTGAAAAGAGTACGCAAACCACATTTAGTTTAATGATTGAGTTTTCTAAAGCAGATTAGAATTT

Coding sequence (CDS)

ATGGTGAGCCTGCAACAATCTCAAACTCAATACCGCAAAATGCTCTCTCAACTTCTACAATTCATTCACCGCCAGTTCGAAGAGGATAACGTTCAATCAGCTCAGTCTACCACCAGACGAGAGGACCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTGTCTGTGTTCCGTTCGAACAAGCATTTGTACGTTCAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGA

Protein sequence

MVSLQQSQTQYRKMLSQLLQFIHRQFEEDNVQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF

Homology

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BLAST of Cp4.1LG03g12100 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.0e-51
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++ T  EDR ARHSRIRKKV GT+ERPRL VFRSNKHLYVQVIDD+KMHTLA+ ST
Sbjct: 45  VVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASAST 104

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
            QK ISE  DYT+GPTIEVAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGR+EALA AAR
Sbjct: 105 KQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAR 164

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 165 EHGLQF 170

[Close]

BLAST of Cp4.1LG03g12100 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.0e-43
Identity = 87/126 (69.05%), Postives = 106/126 (84.13%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V   + +T + DR ARH R+RKKV GT+ERPRLSVFRSNKHLY QVIDD+K  TL + ST
Sbjct: 45  VAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSAST 104

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           M KS+S+ L+Y+AGPT+EVA+K+GE IAKSCLEKGI+KV FDRGG+ YHGR++ALADAAR
Sbjct: 105 MHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAAR 164

Query: 151 EHGLQF 157
           E+GL F
Sbjct: 165 ENGLDF 170

[Close]

BLAST of Cp4.1LG03g12100 vs. Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 39  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 98
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 99  LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 157
           LD T    IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of Cp4.1LG03g12100 vs. Swiss-Prot
Match: RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 8.6e-33
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 1


Query: 39  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 98
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 99  LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 157
           LD T    IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of Cp4.1LG03g12100 vs. Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.3e-32
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 1


Query: 39  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 98
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD K  T+ + ST+ K  S  
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDKEFS-- 66

Query: 99  LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 157
           LD T    I+ AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDSTNN--IDAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of Cp4.1LG03g12100 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-57
Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TTRREDR ARHSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST
Sbjct: 45  VVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 104

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQKSISEGLDY+AGPTIEVAKK+GEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAR
Sbjct: 105 MQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAR 164

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 165 EHGLQF 170

[Close]

BLAST of Cp4.1LG03g12100 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-51
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TT+REDR ARH RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ ST
Sbjct: 41  VVEAKATTKREDRTARHIRIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASAST 100

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQK +S+  DYTAGPTIEVAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAR
Sbjct: 101 MQKPVSDEFDYTAGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAR 160

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 161 EHGLQF 166

[Close]

BLAST of Cp4.1LG03g12100 vs. TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.8e-51
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 34  AQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQK 93
           A++ TRREDR ARHSRIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAAVSTMQK
Sbjct: 51  ARAKTRREDRLARHSRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQK 110

Query: 94  SISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHG 153
            +SE  DY++GPTIEVAK+VGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALA+AAREHG
Sbjct: 111 LVSEESDYSSGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHG 170

Query: 154 LQF 157
           LQF
Sbjct: 171 LQF 173

[Close]

BLAST of Cp4.1LG03g12100 vs. TrEMBL
Match: A0A059D442_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 1.9e-50
Identity = 105/123 (85.37%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 34  AQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQK 93
           A+  TRREDR ARHSRIRKKV+GT ERPRL VFRSNKHLYVQVIDD+KMHTLAAVSTMQK
Sbjct: 51  ARVKTRREDRLARHSRIRKKVQGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQK 110

Query: 94  SISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHG 153
            +SE  DY++GPTIEVAK+VGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALA+AAREHG
Sbjct: 111 LVSEESDYSSGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHG 170

Query: 154 LQF 157
           LQF
Sbjct: 171 LQF 173

[Close]

BLAST of Cp4.1LG03g12100 vs. TrEMBL
Match: K4DHR2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 1


Query: 34  AQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQK 93
           A++ TRREDR ARH RIRKKVEGT ERPR+ VFRSNKH+YVQVIDDSKMHTLA+ STMQK
Sbjct: 40  AKAKTRREDRTARHIRIRKKVEGTPERPRMCVFRSNKHIYVQVIDDSKMHTLASASTMQK 99

Query: 94  SISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHG 153
            ISE  DY+AGPT EVAKKVGE IAK+CLEKGI+KVAFDRGGYPYHGR+EALADAAREHG
Sbjct: 100 PISEEFDYSAGPTAEVAKKVGEVIAKACLEKGITKVAFDRGGYPYHGRIEALADAAREHG 159

Query: 154 LQF 157
           LQF
Sbjct: 160 LQF 162

[Close]

BLAST of Cp4.1LG03g12100 vs. TAIR10
Match: AT1G48350.1 (AT1G48350.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 201.4 bits (511), Expect = 4.0e-52
Identity = 103/126 (81.75%), Postives = 111/126 (88.10%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++ T  EDR ARHSRIRKKV GT+ERPRL VFRSNKHLYVQVIDD+KMHTLA+ ST
Sbjct: 45  VVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASAST 104

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
            QK ISE  DYT+GPTIEVAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGR+EALA AAR
Sbjct: 105 KQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAR 164

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 165 EHGLQF 170

[Close]

BLAST of Cp4.1LG03g12100 vs. TAIR10
Match: AT1G14205.1 (AT1G14205.1 Ribosomal L18p/L5e family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-13
Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A+  TR E  + R+ R RKK  GT  +PRLSVF S+K LY  ++DD     L   ST
Sbjct: 42  VIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYAST 101

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKV-AFDRGGYPYHGRVEALADAA 150
           +QKSI      T    IE AK+VGE + K+ ++  I+++ ++DR G     R++A   A 
Sbjct: 102 LQKSIRGDPPCT---VIEAAKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAI 161

Query: 151 REHG 154
            +HG
Sbjct: 162 AQHG 162

[Close]

BLAST of Cp4.1LG03g12100 vs. TAIR10
Match: AT3G17626.1 (AT3G17626.1 structural constituent of ribosome)

HSP 1 Score: 58.2 bits (139), Expect = 5.4e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1


Query: 104 GPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHG 141
           G TIE+AKKVGE I KSC+E GI+KVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

[Close]

BLAST of Cp4.1LG03g12100 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 230.3 bits (586), Expect = 2.3e-57
Identity = 118/126 (93.65%), Postives = 123/126 (97.62%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TTRREDR ARHSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST
Sbjct: 45  VVEAKATTRREDRAARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 104

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQKSISEGLDY+AGPTIEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAR
Sbjct: 105 MQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAR 164

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 165 EHGLQF 170

[Close]

BLAST of Cp4.1LG03g12100 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 2.9e-57
Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TTRREDR ARHSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST
Sbjct: 45  VVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 104

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQKSISEGLDY+AGPTIEVAKK+GEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAR
Sbjct: 105 MQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAR 164

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 165 EHGLQF 170

[Close]

BLAST of Cp4.1LG03g12100 vs. NCBI nr
Match: gi|694359441|ref|XP_009359828.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 107/126 (84.92%), Postives = 117/126 (92.86%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TT+REDR ARH+RIRKKVEGT ERPRL+VFRS+KH+YVQVIDDSKMHTLA+ ST
Sbjct: 37  VVEAKATTKREDRTARHTRIRKKVEGTPERPRLAVFRSHKHIYVQVIDDSKMHTLASAST 96

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQK ISE  DYT+GPTIEVAKKVGE IAKSCLEKGISKVAFDRGGYPYHGRV+ALADAAR
Sbjct: 97  MQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGISKVAFDRGGYPYHGRVQALADAAR 156

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 157 EHGLQF 162

[Close]

BLAST of Cp4.1LG03g12100 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 211.8 bits (538), Expect = 8.3e-52
Identity = 106/126 (84.13%), Postives = 115/126 (91.27%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TT+REDR ARH RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ ST
Sbjct: 41  VVEAKATTKREDRTARHIRIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASAST 100

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQK +SE  DYTAGPTIEVAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAR
Sbjct: 101 MQKPVSEEFDYTAGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAR 160

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 161 EHGLQF 166

[Close]

BLAST of Cp4.1LG03g12100 vs. NCBI nr
Match: gi|657956181|ref|XP_008369568.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Malus domestica])

HSP 1 Score: 211.5 bits (537), Expect = 1.1e-51
Identity = 107/126 (84.92%), Postives = 116/126 (92.06%), Query Frame = 1


Query: 31  VQSAQSTTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVST 90
           V  A++TT+REDR ARH+RIRK VEGT ERPRL+VFRS+KHLYVQVIDDSKMHTLA+ ST
Sbjct: 37  VVEAKATTKREDRTARHTRIRKTVEGTPERPRLAVFRSHKHLYVQVIDDSKMHTLASAST 96

Query: 91  MQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAR 150
           MQK ISE  DYT+GPTIEVAKKVGE IAKSCLEKGISKVAFDRGGYPYHGRV+ALADAAR
Sbjct: 97  MQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGISKVAFDRGGYPYHGRVQALADAAR 156

Query: 151 EHGLQF 157
           EHGLQF
Sbjct: 157 EHGLQF 162

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g12100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK18_ARATH	7.0e-51	81.75	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S...	[more]
RK18_ORYSJ	7.0e-43	69.05	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1...	[more]
RL18_GEOKA	2.3e-33	65.25	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) GN=rplR PE...	[more]
RL18_GEOSE	8.6e-33	64.41	50S ribosomal protein L18 OS=Geobacillus stearothermophilus GN=rplR PE=1 SV=1	[more]
RL18_GEOTN	7.3e-32	63.56	50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=...	[more]

BLAST of Cp4.1LG03g12100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A4_CUCSA	2.1e-57	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1	[more]
M5XM31_PRUPE	1.3e-51	83.33	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1	[more]
A0A058ZTZ3_EUCGR	3.8e-51	86.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1	[more]
A0A059D442_EUCGR	1.9e-50	85.37	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1	[more]
K4DHR2_SOLLC	2.4e-50	83.74	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of Cp4.1LG03g12100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	4.0e-52	81.75	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	1.2e-13	39.52	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	5.4e-09	72.97	structural constituent of ribosome	[more]

BLAST of Cp4.1LG03g12100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077079\|ref\|XP_008439021.1\|	2.3e-57	93.65	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
gi\|449459812\|ref\|XP_004147640.1\|	2.9e-57	92.86	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus]	[more]
gi\|694359441\|ref\|XP_009359828.1\|	3.7e-52	84.92	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Pyrus x bretschneideri...	[more]
gi\|645231256\|ref\|XP_008222310.1\|	8.3e-52	84.13	PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume]	[more]
gi\|657956181\|ref\|XP_008369568.1\|	1.1e-51	84.92	PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18
IPR004389	Ribosomal_L18_bac-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048653	anther development
biological_process	GO:0016043	cellular component organization
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006412	translation
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0071669	plant-type cell wall organization or biogenesis
biological_process	GO:0040007	growth
biological_process	GO:0048513	animal organ development
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g12100.1	Cp4.1LG03g12100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 38..156 score: 28
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 40..156 score: 5.1
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 38..156 score: 8.5
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 56..156 score: 1.4
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 38..156 score: 5.7
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 39..154 score: 4.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG03g12100	Cucsa.252040	Cucumber (Gy14) v1	cgycpeB0682
Cp4.1LG03g12100	CmaCh14G015460	Cucurbita maxima (Rimu)	cmacpeB283
Cp4.1LG03g12100	CmaCh06G015960	Cucurbita maxima (Rimu)	cmacpeB837
Cp4.1LG03g12100	CmoCh06G015910	Cucurbita moschata (Rifu)	cmocpeB787
Cp4.1LG03g12100	CmoCh14G015820	Cucurbita moschata (Rifu)	cmocpeB245
Cp4.1LG03g12100	Cla021845	Watermelon (97103) v1	cpewmB613
Cp4.1LG03g12100	Csa3G171790	Cucumber (Chinese Long) v2	cpecuB609
Cp4.1LG03g12100	MELO3C006766	Melon (DHL92) v3.5.1	cpemeB585
Cp4.1LG03g12100	ClCG05G007000	Watermelon (Charleston Gray)	cpewcgB559
Cp4.1LG03g12100	CSPI03G15510	Wild cucumber (PI 183967)	cpecpiB611
Cp4.1LG03g12100	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	cpelsiB507
Cp4.1LG03g12100	MELO3C006766.2	Melon (DHL92) v3.6.1	cpemedB693
Cp4.1LG03g12100	CsaV3_3G015690	Cucumber (Chinese Long) v3	cpecucB0759
Cp4.1LG03g12100	Bhi01G000838	Wax gourd	cpewgoB0783
Cp4.1LG03g12100	CsGy3G015560	Cucumber (Gy14) v2	cgybcpeB406
Cp4.1LG03g12100	Carg15519	Silver-seed gourd	carcpeB0973
Cp4.1LG03g12100	Carg19585	Silver-seed gourd	carcpeB0395

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG03g12100	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	cpecpeB482

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG03g12100	Bottle gourd (USVL1VR-Ls)	cpelsiB490
Cp4.1LG03g12100	Watermelon (Charleston Gray)	cpewcgB554
Cp4.1LG03g12100	Watermelon (97103) v1	cpewmB619
Cp4.1LG03g12100	Melon (DHL92) v3.6.1	cpemedB701