Carg15519 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15519
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18
Location	Cucurbita_argyrosperma_scaffold_069 : 645872 .. 647410 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTAGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTAGAAACCTCTCCCTAGTAGACGCATTTTAAAATCATGATGCTAACGGTGATACGTAACGGGCCAAAGTGGACGATATTTGTTAGTAGTGGGCTTGAGCTGTTACAAAAACTCTACATATCCTTGACCTGACACTTTGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTGGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGTGAGTTCACTGCAACTAAGAATTAATTCATTTATGTTTAGCTTTCATTCTTACCCAACATCTGTAACGGTCCAAGCTCACCGCTAGCAGATATTGTTCTCTTTGAACTTTCCCTTTTGGACTTCCTCTAATAGATATTGCCCCCTTCAAAATGTCTTTACATGGACACTGAGTTTAGTTATCGTACATGGCCTTGCTTGAAAAGATTTATTCAATAAGTTCCATCTCTATGCCCTTGAGCTCTAGTCCGACTTGTCATTCTATGTACTCTTATCTATGTACTCTTACATATGTAGCAGGCCATATCGACAGTAGAATTACAAGTTTAGAAACTAAACAGACACCATCATAATTTAGGGTCGCATCCGCACCTTCAGAAGTGAAATCTTTGTTATATGTGGATAATATATGATTGCAGGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTTGTGTTTTTCATTGTCTTCTGTATGGTTTGCTGTAACAGTGCCATCAGATGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTTGTTTCACTTGAAATTAAGAGGGAAATTATTCATTCATTCATCATCCTTTTTCAAAAACAAAATTTACATTGAATCTATCATTTGAAAAGAAAATTACAGACGCTTTGATGTCGATCTTGAAGAAATCGTTATTAGCCTATCTTTTGAATGTATTTTCCTAGAGTGACAGAGATTTGAATATCTGACCTCTTGGTAGATGATATATGTCTTAACTAATTGAACCATTGACTTTTAAAATATT

mRNA sequence

CATTAGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTAGAAACCTCTCCCTAGTAGACGCATTTTAAAATCATGATGCTAACGGTGATACGTAACGGGCCAAAGTGGACGATATTTGTTAGTAGTGGGCTTGAGCTGTTACAAAAACTCTACATATCCTTGACCTGACACTTTGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCCAACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTATGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTGGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTCACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCAAGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGAATATCCCTCTTGTGTTTTTCATTGTCTTCTGTATGGTTTGCTGTAACAGTGCCATCAGATGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTTGTTTCACTTGAAATTAAGAGGGAAATTATTCATTCATTCATCATCCTTTTTCAAAAACAAAATTTACATTGAATCTATCATTTGAAAAGAAAATTACAGACGCTTTGATGTCGATCTTGAAGAAATCGTTATTAGCCTATCTTTTGAATGTATTTTCCTAGAGTGACAGAGATTTGAATATCTGACCTCTTGGTAGATGATATATGTCTTAACTAATTGAACCATTGACTTTTAAAATATT

Coding sequence (CDS)

ATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTGTGTTCTGA

Protein sequence

MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF

Homology

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_022972054.1 (50S ribosomal protein L18, chloroplastic [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGLVF
Sbjct: 156 VEALADAAREHGLVF 170

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGLVF
Sbjct: 156 VEALADAAREHGLVF 170

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_022935706.1 (50S ribosomal protein L18, chloroplastic [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLV 75
           VEALADAAREHGLV
Sbjct: 156 VEALADAAREHGLV 169

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDY++GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. NCBI nr
Match: XP_022955675.1 (50S ribosomal protein L18, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYT+GPTIEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. TAIR10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-31
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           +EALA AAREHGL F
Sbjct: 156 IEALAAAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. TAIR10
Match: AT3G17626.1 (structural constituent of ribosome)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-10
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 22 SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 60
          +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 10 TGSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

[Close]

BLAST of Carg15519 vs. Swiss-Prot
Match: sp|P82195|RK18_SPIOL (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 137.1 bits (344), Expect = 8.0e-32
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAA STMQK+ISE +DY++GPT+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 92  MHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGR 151

Query: 61  VEALADAAREHGLVF 76
           V+ALADAAREHGLVF
Sbjct: 152 VKALADAAREHGLVF 166

[Close]

BLAST of Carg15519 vs. Swiss-Prot
Match: sp|Q9SX68|RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-30
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           +EALA AAREHGL F
Sbjct: 156 IEALAAAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. Swiss-Prot
Match: sp|Q8SAY0|RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-24
Identity = 52/73 (71.23%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 3   TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVE 62
           TL + STM KS+S+ L+Y++GPT+EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++
Sbjct: 98  TLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIK 157

Query: 63  ALADAAREHGLVF 76
           ALADAARE+GL F
Sbjct: 158 ALADAARENGLDF 170

[Close]

BLAST of Carg15519 vs. Swiss-Prot
Match: sp|A4XLR4|RL18_CALS8 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rplR PE=3 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-16
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 2   HTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRV 61
           HTL A S+++  I   L  TS  +IE A+ +G  IA+   EKGITKV FDRGGYPYHGRV
Sbjct: 53  HTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRV 112

Query: 62  EALADAAREHGLVF 76
           +ALADAARE GL F
Sbjct: 113 KALADAAREAGLEF 124

[Close]

BLAST of Carg15519 vs. Swiss-Prot
Match: sp|Q5L3S3|RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-16
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 3   TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVE 62
           T+ + ST+ K    GLD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+
Sbjct: 52  TIVSASTLDKEF--GLDSTN--NIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVK 111

Query: 63  ALADAAREHGLVF 76
           ALADAARE GL F
Sbjct: 112 ALADAAREAGLEF 120

[Close]

BLAST of Carg15519 vs. TrEMBL
Match: tr|A0A1S3AXQ6|A0A1S3AXQ6_CUCME (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-32
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDY++GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. TrEMBL
Match: tr|A0A0A0L9A4|A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-32
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDY++GPTIEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 156 VEALADAAREHGLQF 170

[Close]

BLAST of Carg15519 vs. TrEMBL
Match: tr|A0A199UII4|A0A199UII4_ANACO (50S ribosomal protein L18, chloroplastic OS=Ananas comosus OX=4615 GN=ACMD2_08824 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.6e-29
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK ISEGLDY+SGPTIEVAKKVGEAIAK+CLEKG+TKVAFDRGGYPYHGR
Sbjct: 102 MHTLASASTMQKPISEGLDYSSGPTIEVAKKVGEAIAKACLEKGVTKVAFDRGGYPYHGR 161

Query: 61  VEALADAAREHGLVF 76
           VEALA AARE GL F
Sbjct: 162 VEALASAAREQGLEF 176

[Close]

BLAST of Carg15519 vs. TrEMBL
Match: tr|M5XM31|M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-29
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK +S+  DYT+GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 92  MHTLASASTMQKPVSDEFDYTAGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 151

Query: 61  VEALADAAREHGLVF 76
           VEALADAAREHGL F
Sbjct: 152 VEALADAAREHGLQF 166

[Close]

BLAST of Carg15519 vs. TrEMBL
Match: tr|A0A200QSS1|A0A200QSS1_9MAGN (Ribosomal protein L18/L5 OS=Macleaya cordata OX=56857 GN=BVC80_379g21 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.7e-29
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1   MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK ISE LD+TSGPTIEVAKKVGE IAKSCLEKGI KVAFDRGGYPYHGR
Sbjct: 102 MHTLASASTMQKPISEELDFTSGPTIEVAKKVGELIAKSCLEKGIVKVAFDRGGYPYHGR 161

Query: 61  VEALADAAREHGLVF 76
           +EALADAAREHGL F
Sbjct: 162 IEALADAAREHGLQF 176

The following BLAST results are available for this feature:

BLAST of Carg15519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022972054.1	1.2e-33	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita maxima]	[more]
XP_023538937.1	1.2e-33	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022935706.1	6.2e-33	100.00	50S ribosomal protein L18, chloroplastic [Cucurbita moschata]	[more]
XP_008439021.1	4.0e-32	96.00	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
XP_022955675.1	4.0e-32	96.00	50S ribosomal protein L18, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Carg15519 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	1.1e-31	86.67	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	5.2e-10	73.68	structural constituent of ribosome	[more]

BLAST of Carg15519 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82195\|RK18_SPIOL	8.0e-32	85.33	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
sp\|Q9SX68\|RK18_ARATH	2.0e-30	86.67	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|Q8SAY0\|RK18_ORYSJ	1.6e-24	71.23	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|A4XLR4\|RL18_CALS8	1.6e-16	60.81	50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]
sp\|Q5L3S3\|RL18_GEOKA	2.7e-16	64.38	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ...	[more]

BLAST of Carg15519 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXQ6\|A0A1S3AXQ6_CUCME	2.7e-32	96.00	50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939...	[more]
tr\|A0A0A0L9A4\|A0A0A0L9A4_CUCSA	3.5e-32	94.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1	[more]
tr\|A0A199UII4\|A0A199UII4_ANACO	3.6e-29	88.00	50S ribosomal protein L18, chloroplastic OS=Ananas comosus OX=4615 GN=ACMD2_0882...	[more]
tr\|M5XM31\|M5XM31_PRUPE	4.7e-29	86.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1	[more]
tr\|A0A200QSS1\|A0A200QSS1_9MAGN	4.7e-29	88.00	Ribosomal protein L18/L5 OS=Macleaya cordata OX=56857 GN=BVC80_379g21 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15519-RA	Carg15519-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 1..75 e-value: 5.2E-27 score: 96.5
None	No IPR available	PANTHER	PTHR12899:SF3	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 2..75
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 2..73 e-value: 2.32602E-26 score: 92.9883
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 2..73
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 2..75 e-value: 1.7E-23 score: 83.1
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 2..75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15519	Cla021845	Watermelon (97103) v1	carwmB0692
Carg15519	Csa3G171790	Cucumber (Chinese Long) v2	carcuB0714
Carg15519	MELO3C006766	Melon (DHL92) v3.5.1	carmeB0693
Carg15519	ClCG05G007000	Watermelon (Charleston Gray)	carwcgB0668
Carg15519	CSPI03G15510	Wild cucumber (PI 183967)	carcpiB0728
Carg15519	Cucsa.252040	Cucumber (Gy14) v1	carcgyB0776
Carg15519	CmaCh06G015960	Cucurbita maxima (Rimu)	carcmaB0974
Carg15519	CmaCh14G015460	Cucurbita maxima (Rimu)	carcmaB0972
Carg15519	CmoCh14G015820	Cucurbita moschata (Rifu)	carcmoB0946
Carg15519	CmoCh06G015910	Cucurbita moschata (Rifu)	carcmoB0947
Carg15519	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	carlsiB633
Carg15519	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	carcpeB0973
Carg15519	CsGy3G015560	Cucumber (Gy14) v2	carcgybB0691
Carg15519	MELO3C006766.2	Melon (DHL92) v3.6.1	carmedB0706
Carg15519	CsaV3_3G015690	Cucumber (Chinese Long) v3	carcucB0731
Carg15519	Cla97C05G088670	Watermelon (97103) v2	carwmbB0720
Carg15519	Bhi01G000838	Wax gourd	carwgoB0817

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15519	Cucurbita pepo (Zucchini)	carcpeB0974