CsGy3G015560 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGATAAGGCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTAATTCCACCCTCTAATTTGGGTCAATTTTAAATGTTGTGCTAATTCCTCCTTTCTCTTGTTCAACATTGTTCTTCTCTACCTTGAATACTTTTAGAGGTTGGCTGGAAATGGAGGGGGTCTTTTGATTATTCTTGCAATGGATGTATCGGGGTTTCATTTTATCACCCTATGTTATGTGCTAAACAATTGTTAGTGTACTTCCCTTTGGATATTGTTTCGTTTTTGTTTTTTTTTTTTTTTTGATAGCTTATCAATTCATTGATTTTTTTTTTTCTTCTCTTTTTAGTTTAGAAGTTCTGGTTAGACTACCTAATAGGTTACTTCTTTCTTAGAACATTGCCACTACTTCGTTACACAAGTTATGGGTTTCTGAAGATTGAGGGAAAAAGGGAACAGAATAAAGAAATTGTTATTTGTCATTGCTGCGAGTCAAAACTTCAAAATAGAATTAATATATTTTCAAACGATAGTCTTCATAGCTGTAATCAAAACTTGTTTCGTGATAGGATCTGCTAAGATTTACATTTCTCTCCTTTGGAACTCAGATGACTTGAAAGTAGATTTATTTGTTGGAGAAACCAAAATCCTTAGGAAGAAGTAACTTGTACAAGGAATAGACAGGCAACAGGAGGTTGGACCCCAGAACACAAAATACGAAAGATATCCCCATTTTATATGTATGTTAGCTAAGAAATAAGCCTCATATGTGGAACCACAACTAATTACAACGGAAATGGTGAGATGGTGATCGCCCAGAGCTGGAGGCCCAATATGTTACTAGAACACCAACCCTTCAATTATCAATGTTGAGCAAAAAAAACAGGGTTACTATATGTTCCAGCGTGAGTGTTGAATCTAATGCTACCATTGTACAAAGGAATATGTCCTTTTTCGGATCTTTTAGCACTGTAATTCTCCAGTAATGGGACAGGGTAGCATTATGCATAGGACTTCAGAGACATGAAAAGAGCAACAAGGTAATGCTCAGTGGAGAAAACATTGTTGAAAGCATTTCCTTGAACCCTACCAAGTTACCCAATTATATGCTCGAACTATATTCTGTGTTCCACTGTTATTCATGTGGAAGGTACGTGCAGCATGCACAGAACAGGAGGATCATGGCACATGCACCTGCATACAATATGAATCAAGTTCATGCATCCAGTGGATGACTAGTTTCAAATCTAAATTTTCCTTATCCATGGAACTAAGCACAGAAACTTGCCCAATATTACTAAGGAGATCCAAATGGAAGATAAACTTCAGTCAGTCAGCCATCTTCAAGGAAATTTGCACTAGGACTTCCTACGGTTGTGGTGATTGTGTGAGCTTTAGTAGGTTTAAGTTCAAATGGAAGGTTTTGTTCTAAAGATTCAAGCTACTGGATAGAGTTAATTGACACTATTTCTATGAAGCAAGGATTTAGTTGAACATTTAGAGAGCTCTGTTGACCTTGATGAGAGGGAAGAGAATAAGAGAGCCAGAGATTGGTGAATCAGTCATTATCATTGAGGGAGCATGTGAGACTGACACTTTTTTTTCATTACTATTGATGCGGACAATGTTGGGAAGCATTTTTCTGAATCTTGTGGGTTGGATTTTGATTTCAGCTTTCTTGCATGTTCACTGTATCCCTAGTTATAGAATCTTGGTATTGATGGTTTTGGAAGGCTGACTAAGCGAGGGAGGTTGCTTAGGTTGTACTTTACTAGGGCAAATCGGAACAAAACACTACATGCTTGACCTGCATATGACACTTGGGACGATAGCATTTCCATTCTGCCATAAGATCTGTGTTCAACTGAATTTTTTTAAAATACATTTAGAATGGTGAAATAAAGTTAATAGGATTTTTAATGGGAAGTATATCCTCCCGCTCTAACTCAAAGATTTATGGATAATTCTCTTTAATTAAACATCTGAACGTAGTACATGATCAGTTGAATCTTTTTAATCTTCCTTTTTTCATACATCTGGATCCCTTCAGAACTGTTCTGGTTTACAATTGTTGTCTTTATAATAGCAAATTGATCCTTGCGGGTATAGATGGTAGATACTAAAGTACAGTTCACCTGTACAATCATCTTTTGTCTTAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGTGAGTCACTTAACTAAGAATTAGTTGATTGATCTACTGATGTAGATATATATGTGTATGCGTGTGCAGATATATATATATATATATATTGGTCCTATGGTAATCTTTAGCTTTCATCCACCCTTTTCCAAACTTTGTTCCACTGGTTTGATGTCTATGTAGATCTTCATACCTCTACTAAATAAGAGAGCATCCATTAATTTGGTCAGACATCCTGAGAGATTTGATTACTGAACTTGAATACATAAATGAAACAGCAAAAGAAAAGAAAAACAAAACTATAAATGCCAAGACCAATAGCTAGTCTTTAAAGGAGCATTAAGTTTAGTTATTGTACAAAGCCTTACTTGAATAGATGAGTTCTATCTGTATGTCAACAAATTAAACTTTTTAGTCTCTAAAGGCTAAATTTGAAAAAGTTTGTCTTACTTGTCAGTCATTCTATTAACACTGCTAATCAACCTAAGACGTGACAAAGACTGGATAGAATTACAAGCCCAAGTTAAAGGATGAGATTAAATTTAGAGACCAAGTAGATGTCTTGATCGAAGCAGAATTCTTATTATTATGTGGATAATATGATTGTTACAGGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGCTCAGTTTAACAAGTGTTTCAAACGTTTAGATGATCTAAGTTCATATCATATCTATGTTACAGGAAGATAGATGAAGCATAGATTTAAAAGGAAATGTTTTTTTAGTACAAATAAGGGATAGGGGATAGAATCACAATACCTCTCGATTCT AGATAAGGCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGCTCAGTTTAACAAGTGTTTCAAACGTTTAGATGATCTAAGTTCATATCATATCTATGTTACAGGAAGATAGATGAAGCATAGATTTAAAAGGAAATGTTTTTTTAGTACAAATAAGGGATAGGGGATAGAATCACAATACCTCTCGATTCT ATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_004147640.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypothetical protein Csa_3G171790 [Cucumis sativus]) HSP 1 Score: 331.3 bits (848), Expect = 2.0e-87 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]) HSP 1 Score: 321.6 bits (823), Expect = 1.6e-84 Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 291.6 bits (745), Expect = 1.7e-75 Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 0
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_022972054.1 (50S ribosomal protein L18, chloroplastic [Cucurbita maxima]) HSP 1 Score: 286.6 bits (732), Expect = 5.6e-74 Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0
BLAST of CsGy3G015560 vs. NCBI nr
Match: XP_022137866.1 (50S ribosomal protein L18, chloroplastic [Momordica charantia]) HSP 1 Score: 286.2 bits (731), Expect = 7.3e-74 Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0
BLAST of CsGy3G015560 vs. TAIR10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein) HSP 1 Score: 214.2 bits (544), Expect = 6.4e-56 Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0
BLAST of CsGy3G015560 vs. TAIR10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein) HSP 1 Score: 77.4 bits (189), Expect = 9.4e-15 Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 0
BLAST of CsGy3G015560 vs. TAIR10
Match: AT3G17626.1 (structural constituent of ribosome) HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09 Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0
BLAST of CsGy3G015560 vs. Swiss-Prot
Match: sp|P82195|RK18_SPIOL (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3) HSP 1 Score: 217.2 bits (552), Expect = 1.4e-55 Identity = 121/172 (70.35%), Postives = 136/172 (79.07%), Query Frame = 0
BLAST of CsGy3G015560 vs. Swiss-Prot
Match: sp|Q9SX68|RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54 Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0
BLAST of CsGy3G015560 vs. Swiss-Prot
Match: sp|Q8SAY0|RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1) HSP 1 Score: 180.6 bits (457), Expect = 1.4e-44 Identity = 90/120 (75.00%), Postives = 104/120 (86.67%), Query Frame = 0
BLAST of CsGy3G015560 vs. Swiss-Prot
Match: sp|Q5L3S3|RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32 Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 0
BLAST of CsGy3G015560 vs. Swiss-Prot
Match: sp|P09415|RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 1.2e-32 Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0
BLAST of CsGy3G015560 vs. TrEMBL
Match: tr|A0A0A0L9A4|A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 1.3e-87 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
BLAST of CsGy3G015560 vs. TrEMBL
Match: tr|A0A1S3AXQ6|A0A1S3AXQ6_CUCME (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 1.0e-84 Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0
BLAST of CsGy3G015560 vs. TrEMBL
Match: tr|M5XM31|M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 1.6e-56 Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 0
BLAST of CsGy3G015560 vs. TrEMBL
Match: tr|A0A2I4F631|A0A2I4F631_9ROSI (50S ribosomal protein L18, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108995894 PE=3 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 6.6e-55 Identity = 119/153 (77.78%), Postives = 129/153 (84.31%), Query Frame = 0
BLAST of CsGy3G015560 vs. TrEMBL
Match: tr|A0A1S4DL03|A0A1S4DL03_TOBAC (50S ribosomal protein L18, chloroplastic-like OS=Nicotiana tabacum OX=4097 GN=LOC107830818 PE=3 SV=1) HSP 1 Score: 222.6 bits (566), Expect = 6.6e-55 Identity = 121/163 (74.23%), Postives = 132/163 (80.98%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |