CsaV3_3G015690 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G015690
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L18
Location	chr3 : 11665157 .. 11668784 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAATGTAGAAAAACTATTGCCCAATGTAGATAAGGCAACCCCAACTCAACTACAAAACACAATCAAATCCTCGACGAGAGAAGCAGGGCAACAATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTAATTCCACCCTCTAATTTGGGTCAATTTTAAATGTTGTGCTAATTCATCCTTTCTCTTGTTCAACATTGTTCTTCTCTACCTTGAATACTTTTAGAGGTTGGCTGGAAATGGAGGGGGTCTTTTGATTATTCTTGCAATGGATGTATCGGGGTTTCATTTTATCACCCTATGTTATGTGCTAAACAATTGTTAGTGTACTTCCCTTTGGATATTGTTTCGTTTTTTTTTTTTTTTTTTTTTTTTGATAGCTTATCAATTCATTGATTTTTTTTTTTTTTCTTCTCTTTTTAGTTTAGAAGTTCTGGTTAGACTACCTAATAGGTTACTTCTTTCTTAGAACATTGCCACTACTTCGTTACACAAGTTATGAGTTTCTGAAGATTGAGGGAAAAAGGGAACAGAACAAAGAAATTGTTATTTGTCATTGCTGCGAGTCAAAACTTCAAAATAGAATTAATATATTTTCAAACGATAGTCTTCATAGCTGTAATCAAAACTTGTTTCGTGATAGGATCTGCTAAGATTTACATTTCTCTCCTTTGGAACTCAGATGACTTGAAAGTAGATTTATTTGTTGGAGAAACCAAAATCCTTAGGAAGAAGTAACTTGTACAAGGAATAGACAGGCAACAGGAGGTTGGACCCCAGAACACAAAATACGAAAGATATCCCCATTTTATATGTATGTTAGTTAAGAAATAAGCCTCATATGTGGAACCACAACTAATTACTACGGAAATGGTGAGATGGTGATCGCCCAGAGCTGGAGGCCCAATATGTTACTAGAACACCAACCCTTCAATTATCAATGTTGAGCAAAAAAAACAGGGTTACTATATGTTCCAGCGTGAGTGTTGAATCTAATGCTACCATTGTACAAAGGAATATGTCCTTTTTCGGATCTTTAGCACTGTAATTCTCCAGTAATGGGACAGGGTAGCATTATGCATAGGACTTCAGAGACATGAAAAGAGCAACAAGGTAATGCTCAGTGGAGAAAACATTGTTGAAAGCATTTCCTTGAACCCTACTAAGTTACCCAATTATATGCTCGAACTATATTCTGTGTTCCACTGTTATTCATGTGGAAGGTACGTGCAGCATGCACAGAACAGGAGGATCACGGCACATGCACCTGCATACAATATGAATCAAGTTCATGCATCCAGTGGATGACTAGTTTCAAATCTAAATTTTCCTTATCCATGGAACTAAGCACAGAAACTTGCCCAATATTACTAAGGAGATCCAAATGGAAGATAAACTTCAGTCAGTCAGCCATCTTCAAGGAAATTTGCACTAGGACTTCCTACGGTTGTGGTGATTGTGTGAGCTTTAGTAGGTTTAAGTTCAAATGGAAGGTTTTGTTCTAAAGATTCAAGCTACTGGATAGAGTTAATTGACACTATTTCTATGAAGCAAGGATTTAGTTGAACATTTAGAGAGCTCTGTTGACCTTGATGAGAGGAAAGAGAATAAGAGAGCCAGAGATTGGTGAATCAGTCATTATCATTGAGGGAGCATGTGAGACTGACACTTTTTTTTCATTACTATTGATGCGGACAATGTTGGGAAGCATTTTTCTGAATCCTTGTGGGTTGGATTTTGATTTCAGCTTTCTTGCATGTTCACTGTATCCCTAGTTATAGAATCTTGGTATTGATGGTTTTGGAAGGCTGACTAAGCGAGGGAGGTTGCTTAGGTTGTACTTAACTAGGGCAAATCGGAACAAAACACTACATGCTTGACCTGCATATGACACTTGGGACGATAGCATTTCCATTCTGCCATAAGATCTGTCTTCAACTGAATTTTTTTAAAATACATTTAGAATGGTTAAATAAAGTTAATAGGATTTTTAATGGGAAGTATATCCTCCCGCTCTAACTCAAAGATTTATGGATAATTCTCTTTATTTAAACATCTGAACGTAGTACATGATCAGTTGAATCTTTTTAATCTTCCTTTTTTCATACATCTGGATCCCTTCAGAACTGTTCTGGTTTACAATTGTTATCTTTATAATAGCAAATTGATCCTTGCGGGTATAGATGGTAGATACTAAAGTACAGTTCACCTGTACAATCATCTTTTGTCTTAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGTGAGTCACTATAACTAAGAATTAGTTGATTGATCTACTGATGTAGATATATATGTGTATGCGTGTGCAGATATATATATATATATTGGTCCTATGGTAATCTTTAGCTTTCATCCACCCTTTTCCAAACTTTGTTCCACTGGTTTGATGTCTATGTAGATCTTCATACATCTACTAAATAAGAGAGCATCCATTAATTTGGTCAGACATCCTGAGAGATTTGATTACTGAACTTGAATACATAAATGAAACAGCAAAAGAAAAGAAAAACAAAACTATAAATGCCAAGACCAATAGCTAGTCTTTAAAGGAGCATTAAGTTTAGTTATTGTACAAAGCCTTACTTGAATAGATGAGTTCTATCTGTATGTCAACAAATTAAACTTTTTAGTCTCTAAAGGCTAAATTTGAAAAAGTTTGTCTTACTTGTCAGTCATTCTATTAACACTGCTAATCAACCTAAGACGTGACAAAGACTGGATAGAATTACAAGCCCAAGTTAAAGGATGAAATTAAATTTAGAGACCAAGTAGATGTCTTGATCGAAGCAGAATTCTTATTATTATGTGGATAATATGATTGTTACAGGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGAGAATCCTTGTGTGTGTGTTTTTTTTCTTCATATCTTTTAGCTTGGTATTATGTAACAGTGCCATCATATGGGCTTATTTTCTGTTGATTAGACGAGAGTTGTAGTCGTTTGACCTGAAATTAAGAGGGAAATTATTTATTGATTCATCTTTTCTTGGCATATCAATGTCTCTAGGTCAGTTTAACAAGTGTTTCAAACATTTAGATGATCTAAGTTCATATCATATCTATGTTACAGGAAGATAGATGAAGCATAGATTTAAAACGAAATGTTTTTTAGTACAAATAAGGGATAGGGGATAGGAATCACGATACCTCTGGATTCTCA

mRNA sequence

ATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA

Coding sequence (CDS)

ATGGCTTCAACCACTGCTCCTTGTTCCTTCCTCCGCACTTCCTTTCTAACCGTATCTTATTCACAGAACATTCTCAACCGTCCGCACCTTCATTTTCCGCCTACTACTTCAAGTTCCGGCCGTCACTCTCTTGTTGTTGAAGCCAAGGCTACGACCAGACGAGAGGACCGCACAGCTCGCCATTCTCGAATTAGGAAGAAGGTTGAAGGAACAACGGAGAGGCCAAGGTTATCTGTTTTCCGTTCGAATAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCTACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAATAGGGGAAGCGATTGCAAAATCTTGTTTGGAGAAAGGAATAACAAAAGTTGCATTCGATCGCGGTGGATATCCATACCATGGACGAGTAGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAATTCTGA

Protein sequence

MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF

Homology

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BLAST of CsaV3_3G015690 vs. NCBI nr
Match: XP_004147640.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypothetical protein Csa_3G171790 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 1.2e-87
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CsaV3_3G015690 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 9.3e-85
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CsaV3_3G015690 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.4 bits (747), Expect = 1.0e-75
Identity = 151/170 (88.82%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M+S  AP SFL TS L VSYSQN+   PHL+FP TTSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

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BLAST of CsaV3_3G015690 vs. NCBI nr
Match: XP_022972054.1 (50S ribosomal protein L18, chloroplastic [Cucurbita maxima])

HSP 1 Score: 287.3 bits (734), Expect = 3.3e-74
Identity = 149/170 (87.65%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M+S TA  SFL +S L VSYSQN+   PHL+FP +TSSSGRHSLV+EAKATTRREDR AR
Sbjct: 1   MSSATAFISFLGSSILGVSYSQNLRVPPHLNFPSSTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

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BLAST of CsaV3_3G015690 vs. NCBI nr
Match: XP_022137866.1 (50S ribosomal protein L18, chloroplastic [Momordica charantia])

HSP 1 Score: 287.0 bits (733), Expect = 4.3e-74
Identity = 145/170 (85.29%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           M++  +PCSFL +SFL+VSY Q + NRP  +FP  TSSSGRHSL+VEAKATTRREDR AR
Sbjct: 1   MSAAISPCSFLGSSFLSVSYPQKLRNRPQFNFPVPTSSSGRHSLLVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT ERPRLSV+RSNKHLYVQVIDDSKMHTLAA STMQKSISEGLDYS+GPT
Sbjct: 61  HSRIRKKVEGTPERPRLSVYRSNKHLYVQVIDDSKMHTLAAASTMQKSISEGLDYSSGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of CsaV3_3G015690 vs. TAIR10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 214.9 bits (546), Expect = 3.8e-56
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 33  PPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKK+GE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of CsaV3_3G015690 vs. TAIR10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-15
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 13  TSFLTVSYS-QNILN---RPHLHFP-PTTSSSGRHSLVVEAKATTRREDRTARHSRIRKK 72
           TS  TV +   +IL    +P+  FP   T+ S     V+EA+  TR E    R+ R RKK
Sbjct: 5   TSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRSRKK 64

Query: 73  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKI 132
             GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      +    IE AK++
Sbjct: 65  FTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAAKRV 124

Query: 133 GEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHG 168
           GE + K+ ++  I ++ ++DR G     R++A   A  +HG
Sbjct: 125 GEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHG 162

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BLAST of CsaV3_3G015690 vs. TAIR10
Match: AT3G17626.1 (structural constituent of ribosome)

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 118 GPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           G TIE+AKK+GE I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

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BLAST of CsaV3_3G015690 vs. TAIR10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-05
Identity = 27/94 (28.72%), Postives = 49/94 (52.13%), Query Frame = 0


Query: 77  LSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCL 136
           L +  +NK ++ QVI         + S+ +K++ E +D +    +  A KIG+ + +  L
Sbjct: 21  LKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITR--DVAAASKIGKILGERLL 80

Query: 137 EKGITKVAFD-RGGYPYHGRVEALADAAREHGLQ 170
            K I  V    +    YHG+V+A+ D+ RE G++
Sbjct: 81  MKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVK 112

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BLAST of CsaV3_3G015690 vs. Swiss-Prot
Match: sp|P82195|RK18_SPIOL (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 218.0 bits (554), Expect = 8.1e-56
Identity = 121/172 (70.35%), Postives = 136/172 (79.07%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRP--HLHFPPTTSSSGRHSLVVEAKATTRREDRT 60
           MA+ T+   F  T   + S S   L+ P   ++F P T        +++AKA TRREDRT
Sbjct: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDRT 60

Query: 61  ARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAG 120
           ARH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DYSAG
Sbjct: 61  ARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAG 120

Query: 121 PTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           PT+EVA+KIGE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 PTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

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BLAST of CsaV3_3G015690 vs. Swiss-Prot
Match: sp|Q9SX68|RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.8e-55
Identity = 110/138 (79.71%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 33  PPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVID 92
           P ++SS    S+VVEAK  T  EDR ARHSRIRKKV GTTERPRL VFRSNKHLYVQVID
Sbjct: 33  PWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVID 92

Query: 93  DSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPY 152
           D+KMHTLA+ ST QK ISE  DY++GPTIEVAKK+GE IAKSCLEKGITKVAFDRGGYPY
Sbjct: 93  DTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPY 152

Query: 153 HGRVEALADAAREHGLQF 171
           HGR+EALA AAREHGLQF
Sbjct: 153 HGRIEALAAAAREHGLQF 170

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BLAST of CsaV3_3G015690 vs. Swiss-Prot
Match: sp|Q8SAY0|RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.4e-45
Identity = 90/120 (75.00%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 51  TTRREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSIS 110
           +T + DR ARH R+RKKV GTTERPRLSVFRSNKHLY QVIDD+K  TL + STM KS+S
Sbjct: 51  STPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLS 110

Query: 111 EGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           + L+YSAGPT+EVA+KIGE IAKSCLEKGITKV FDRGG+ YHGR++ALADAARE+GL F
Sbjct: 111 KDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170

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BLAST of CsaV3_3G015690 vs. Swiss-Prot
Match: sp|Q5L3S3|RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-33
Identity = 75/118 (63.56%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKK+GE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CsaV3_3G015690 vs. Swiss-Prot
Match: sp|P09415|RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 7.4e-33
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 53  RREDRTARHSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GTTERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKK+GE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of CsaV3_3G015690 vs. TrEMBL
Match: tr|A0A0A0L9A4|A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 7.8e-88
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of CsaV3_3G015690 vs. TrEMBL
Match: tr|A0A1S3AXQ6|A0A1S3AXQ6_CUCME (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.2e-85
Identity = 165/170 (97.06%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60
           MASTTAPCSFL TSFL+VSYSQNILNRPHLHFP TTSSSGRHSLVVEAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of CsaV3_3G015690 vs. TrEMBL
Match: tr|M5XM31|M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 9.3e-57
Identity = 124/168 (73.81%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 5   TAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSS--SGRHSLVVEAKATTRREDRTARHS 64
           +A  SFL T+   ++ SQ +  RP L    TT S      SLVVEAKATT+REDRTARH 
Sbjct: 2   SASISFLGTA---IASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DY+AGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKK+GE IAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of CsaV3_3G015690 vs. TrEMBL
Match: tr|A0A2I4F631|A0A2I4F631_9ROSI (50S ribosomal protein L18, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108995894 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.9e-55
Identity = 119/153 (77.78%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 21  SQNILNRPHLHFPPTTSSSGRH---SLVVEAKATTRREDRTARHSRIRKKVEGTTERPRL 80
           SQ +   P    P + S+  +    SLVVEAKATTRREDRTARHSRIRKKVEGT ERPRL
Sbjct: 15  SQQLWMGPKFVAPASASTQRQRPSLSLVVEAKATTRREDRTARHSRIRKKVEGTPERPRL 74

Query: 81  SVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLE 140
            VFRSNKHLYVQVIDD+KMHTLA+ STMQK ISE  DYS+G TIEVAKK+GE IAKSCLE
Sbjct: 75  CVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEFDYSSGATIEVAKKVGEVIAKSCLE 134

Query: 141 KGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           KGITKVAFDRGGYPYHGRVEALA+AARE+GLQF
Sbjct: 135 KGITKVAFDRGGYPYHGRVEALANAARENGLQF 167

[Close]

BLAST of CsaV3_3G015690 vs. TrEMBL
Match: tr|A0A1S4DL03|A0A1S4DL03_TOBAC (50S ribosomal protein L18, chloroplastic-like OS=Nicotiana tabacum OX=4097 GN=LOC107830818 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 3.9e-55
Identity = 121/163 (74.23%), Postives = 132/163 (80.98%), Query Frame = 0


Query: 8   CSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTARHSRIRKK 67
           C+ L  SFL  + + N   +  L F     +S R  L VEAKATTRREDRTARH RIRKK
Sbjct: 48  CTSLSLSFLHNACADN--KQLTLSFRTKLVTSAR-PLTVEAKATTRREDRTARHVRIRKK 107

Query: 68  VEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKI 127
           VEGT ERPRL VFRSNKH+YVQVIDDSKMHTLA+ STMQK ISE  DYSAGPT +VAKK+
Sbjct: 108 VEGTPERPRLCVFRSNKHIYVQVIDDSKMHTLASASTMQKPISEEFDYSAGPTTDVAKKV 167

Query: 128 GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           GE IAK+CLEKGITKVAFDRGGYPYHGR+EALADAAREHGLQF
Sbjct: 168 GEVIAKACLEKGITKVAFDRGGYPYHGRIEALADAAREHGLQF 207

The following BLAST results are available for this feature:

BLAST of CsaV3_3G015690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147640.1	1.2e-87	100.00	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222....	[more]
XP_008439021.1	9.3e-85	97.06	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
XP_023538937.1	1.0e-75	88.82	50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022972054.1	3.3e-74	87.65	50S ribosomal protein L18, chloroplastic [Cucurbita maxima]	[more]
XP_022137866.1	4.3e-74	85.29	50S ribosomal protein L18, chloroplastic [Momordica charantia]	[more]

BLAST of CsaV3_3G015690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	3.8e-56	79.71	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	7.2e-15	36.65	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	2.0e-09	72.97	structural constituent of ribosome	[more]
AT5G27820.1	5.2e-05	28.72	Ribosomal L18p/L5e family protein	[more]

BLAST of CsaV3_3G015690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82195\|RK18_SPIOL	8.1e-56	70.35	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
sp\|Q9SX68\|RK18_ARATH	6.8e-55	79.71	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|Q8SAY0\|RK18_ORYSJ	8.4e-45	75.00	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|Q5L3S3\|RL18_GEOKA	7.4e-33	63.56	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ...	[more]
sp\|P09415\|RL18_GEOSE	7.4e-33	63.56	50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1...	[more]

BLAST of CsaV3_3G015690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L9A4\|A0A0A0L9A4_CUCSA	7.8e-88	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1	[more]
tr\|A0A1S3AXQ6\|A0A1S3AXQ6_CUCME	6.2e-85	97.06	50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939...	[more]
tr\|M5XM31\|M5XM31_PRUPE	9.3e-57	73.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1	[more]
tr\|A0A2I4F631\|A0A2I4F631_9ROSI	3.9e-55	77.78	50S ribosomal protein L18, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN...	[more]
tr\|A0A1S4DL03\|A0A1S4DL03_TOBAC	3.9e-55	74.23	50S ribosomal protein L18, chloroplastic-like OS=Nicotiana tabacum OX=4097 GN=LO...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18
IPR004389	Ribosomal_L18_bac-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0065008	regulation of biological quality
biological_process	GO:0071669	plant-type cell wall organization or biogenesis
biological_process	GO:0040007	growth
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048513	animal organ development
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0048653	anther development
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G015690.1	CsaV3_3G015690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAM	TIGR00060	TIGR00060	coord: 54..170 e-value: 3.9E-42 score: 141.2
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 27.955
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 51..170 e-value: 3.6E-46 score: 158.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70
None	No IPR available	PANTHER	PTHR12899:SF3	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 41..170
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 64..168 e-value: 3.11427E-44 score: 142.679
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 53..168
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..170 e-value: 2.2E-46 score: 156.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 41..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G015690	CSPI03G15510	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G015690	Cucsa.252040	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G015690	CmaCh14G015460	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G015690	CmaCh06G015960	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G015690	CmoCh14G015820	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G015690	CmoCh06G015910	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G015690	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G015690	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G015690	CsGy3G015560	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G015690	Carg19585	Silver-seed gourd	carcucB0309
CsaV3_3G015690	Carg15519	Silver-seed gourd	carcucB0731
CsaV3_3G015690	Cla021845	Watermelon (97103) v1	cucwmB239
CsaV3_3G015690	MELO3C006766	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G015690	ClCG05G007000	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G015690	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	cuclsiB229
CsaV3_3G015690	MELO3C006766.2	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G015690	Cla97C05G088670	Watermelon (97103) v2	cucwmbB206
CsaV3_3G015690	Bhi01G000838	Wax gourd	cucwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G015690	Bottle gourd (USVL1VR-Ls)	cuclsiB245