Carg19585 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19585
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	50S ribosomal protein L18
Location	Cucurbita_argyrosperma_scaffold_117 : 13372 .. 16675 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGGCACCGCAACTGAAGAAGGAAAAGGAAAACGAACCAGAAGCCGTCGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGAGGAGGAGGACGACAATGTCTTCAGCCACTGCTCCATTATCGTTCCTTGGCAGTTCCTTTCTCGGCGGTTCTTCCTCACAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGGCTACGACCAGACGAGAGGATCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTAATCGCAGACTTCATTTCCCCAATTTAAAACTTAGTGCCTTACCTCCTTCGCGTCCCTCGCTGCGCTAATCGGGCGATTCTCTTGATCAACTTTGTTATCTGCCTCAAATAATTTCACTGGGAAATGGTGGTAGGTTATTTGAATAATTCTTGCTATGTACGCATCTGGCTTTCATCTTATTACCTTATCTTATCTGGATATTGTTTCATTTTAGGTATAAATATTGTGAACCTCCTAAGGATTGATTTGATAGTTCATCAATTCATCGTTTCTTGAGTTTAGAAGTTCTGGTTCTACCAGCTAAGAGGTGTGCTTGTTTCTTAGAAGAAATTGATGCTTCCGTGTGGATATTGTTTCACTTTAGCTTAGAGGTGCATTTTGCCAATACATGAGTCCTGGATTTCTGATGATTAATGGTGTAACAGCTGAAGTCCGTCCTCTTTTGAATTTTCCTTTCAAGCTTCCCCTCAAGGTTTTTAAAATGCATATGCTAGGGGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCTCAACAGATATGGGATCTCACAATCCACCTCCCTTCAGGGCCTAGTGTCCTCGCTGGCACACCGCTTAGTGTCCACCCCCTTTGGGGCTCAACGTCCTCACTGTCACATTGTCTAGTGCCTGGTTTTAATACCATTTGTAACAGCCAAAGTCCACCGCTAGCAAATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTAAAATGCGTTTGGTAGGGAGAGGTTTCCACACCTTTATAAAGAATGTTTTGTTTCCCCTTTCCAACCAATGTGAGATCTCACGTGCAAGGACTAGGACTTCCCACCGTTGTAGGAACTGGATGAGATTTAGGAGGTTTAGTATAAATCAGACGCTTTGATTTATCAAGCTACTGGATAGAGTTTATTCACACTATTTTCTATGAACCAAGGATTTAGTTGAACATTTAAGGAGCAATATTGGCGTTGATGAGAGGCAGGAGAATAAGAGAACAAGAGATTGGTGAGGCAGTCATCGTCAATGGGGGAGCTTGTGAGATTGACTCTTTTCTTTTCTCATTCCTATTGATACATACAAGGTTGGGAAGCGTTTTTCTCTCTCTCATGGATTGGAATTTGATTGCAGCTTTTGTAACAACCCGAGCCCACCGCTAGCAGATATTGTCCTCTTAAACTTTCCCTTCCGGACTTTCCCTCAAGGTTTTTAAAACGCATCTACTAGGGAAAGATTTTCACACCCTTATAAAGGATGCTTCGTTCCCCTCTCTAACTGACGTGGAATTCACAGCTTTCTTGCATGTTAGCTTTATCTTTAGTTGTTGAATCTCGTTGTATTGGGAGATTGCTTAGGCTACACATAGCGAGGGCAAACTCCAAACAAAACACTACGCATCCTCGACCTGCATATGACGCTTGGGAAGGTGACATTCAATTCATGCCATAGGACCTCTCTTCAACTCGAAATCTTTTAAATTCATCTAGAACGGTTAAACAAAGATCTACGAACATAGTTACACAATCAATTGAATCTTTTTAATTTTCATTCTTGTAAACATCTGAATCCTTTAAGCTCTGGTTCACAGTTGTTATCTTTACTATAGCAAATTGATTCTTGCTGATATATATGTAGATAATAAAGTACAGTTTGCCTGTACAATCATCTTGTGCCTCAGGTTGAAGGAACATCAGAGAGGCCAAGGTTATCTGTGTTCCGTTCGAACAAGCATTTGTACGTACAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGTGAGTTCACTGTAACTAAGAATCAAATGTGATTGATACACCGATAATCTTTTGTTGGGTTCGATTATTTCCTTTGCGGGCTTCTCTCAAGGTTTTTAAAACGTGTTTGCTAGGAAGAGGTTTCCACATCCTTATAAAAGATGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCCAGCGTCCTCGCTGGCACTCGTTCTATTCTCCAATCGATGTGGAACCCCCCAATTCACCTCCTTTGGGGCTTAGCCCTCCGCTTGCGCATCGCCGTTTGGCTCTGATACCATTTGTAATGGTCTAAGCCCACCACTAGCAGATATTGTCCTCTTTGATCTTTCCCTTTCGGGCTTCCTCTTAAGGTTTATAAAACGCGTCTACTAGAGAGAGGTTTCCACACACTTATAAAGAATGTTTCGTTCTTCTCTCCAACCGAGGTAGGATCTCACAGAATGTCTCTGCATGGGCATAGAGTTTTAGTTATTGTCCATAGTTTACTTGAATAAGTTCTTCATAAATGCCCTCAAGTTTTAAAAAGTTATCAAACAAATTATAAATTTAATTTTCGTGTCATTCTATGCATTCTCTTACATTAACACGGTTGATTAAATAGCAACATGGCCGATAATTTAAACAAATATTGACTGATTTAACACGTCACACGGTCGTTTAAGGCTACATAGAAGGCTACATAGAATTACAAGGGTAAGTTTAAGGCACATTATATGATTATATGTGGATAATATGGTTACAGGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGAAAATCCCTCTGTTTTTCTGTATCTTCTTGCTTGGTATGCTGTAACAGTGCCATCAGATGACCTTGTCGACTCTAAGCTTGTCCTATGTTTAATGGTTAGTCTATGTTTAATGGTTGAATAGATCAGATACTGAAAAGAGTACGCAAACCACATTTAGTTTAATGGTTGAGTTTTCTAAAGCATATTAGAATTTTGATTGATATTCCACATCGATTAG

mRNA sequence

ATAAGGCACCGCAACTGAAGAAGGAAAAGGAAAACGAACCAGAAGCCGTCGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGAGGAGGAGGACGACAATGTCTTCAGCCACTGCTCCATTATCGTTCCTTGGCAGTTCCTTTCTCGGCGGTTCTTCCTCACAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGGCTACGACCAGACGAGAGGATCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTATCTGTGTTCCGTTCGAACAAGCATTTGTACGTACAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGAAAATCCCTCTGTTTTTCTGTATCTTCTTGCTTGGTATGCTGTAACAGTGCCATCAGATGACCTTGTCGACTCTAAGCTTGTCCTATGTTTAATGGTTAGTCTATGTTTAATGGTTGAATAGATCAGATACTGAAAAGAGTACGCAAACCACATTTAGTTTAATGGTTGAGTTTTCTAAAGCATATTAGAATTTTGATTGATATTCCACATCGATTAG

Coding sequence (CDS)

ATGTCTTCAGCCACTGCTCCATTATCGTTCCTTGGCAGTTCCTTTCTCGGCGGTTCTTCCTCACAGAATCTTCGCAATCGTCTTCAGCTTAATTTTCCGGCAACCACCTCAAGTTCCGGCCAACACTCTCTTGCTGTCCAAGCCAAGGCTACGACCAGACGAGAGGATCGTCAAGCTCGTCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTATCTGTGTTCCGTTCGAACAAGCATTTGTACGTACAAGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCGATCTCCGAGGGGCTAGACTACACTGCTGGTCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGCCTGGAGAAAGGAATTTCAAAGGTAGCTTTTGACCGAGGTGGATATCCATACCATGGACGTGTAGAAGCACTTGCTGATGCAGCTCGTGAACATGGCCTTCAGTTCTGA

Protein sequence

MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF

Homology

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BLAST of Carg19585 vs. NCBI nr
Match: XP_023528212.1 (50S ribosomal protein L18, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.7 bits (818), Expect = 6.0e-84
Identity = 169/170 (99.41%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAK+TTRREDRQAR
Sbjct: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKSTTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Carg19585 vs. NCBI nr
Match: XP_022979945.1 (50S ribosomal protein L18, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 317.8 bits (813), Expect = 2.3e-83
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           MSSATAPLSFLGSSFLG SSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR
Sbjct: 1   MSSATAPLSFLGSSFLGRSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Carg19585 vs. NCBI nr
Match: XP_022955675.1 (50S ribosomal protein L18, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 314.7 bits (805), Expect = 1.9e-82
Identity = 167/170 (98.24%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           MSSA A LSFLGSSFLGG+SSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR
Sbjct: 1   MSSAAASLSFLGSSFLGGASSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Carg19585 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 5.6e-74
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           M+S TAP SFLG+SFL  S SQN+ NR  L+FPATTSSSG+HSL V+AKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Carg19585 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 284.3 bits (726), Expect = 2.8e-73
Identity = 151/170 (88.82%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           MSSA APLSFLG+S LG S SQNLR    LNFP+TTSSSG+HSL ++AKATTRREDR AR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYT+GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

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BLAST of Carg19585 vs. TAIR10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 210.7 bits (535), Expect = 7.1e-55
Identity = 114/158 (72.15%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 13  SSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTS 72
           S+FLG      L++R     P ++SS    S+ V+AK  T  EDR ARHSRIRKKV GT+
Sbjct: 17  SAFLG----NGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTT 76

Query: 73  ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIA 132
           ERPRL VFRSNKHLYVQVIDD+KMHTLA+ ST QK ISE  DYT+GPTIEVAKKVGE IA
Sbjct: 77  ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIA 136

Query: 133 KSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           KSCLEKGI+KVAFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 137 KSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170

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BLAST of Carg19585 vs. TAIR10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-14
Identity = 50/133 (37.59%), Postives = 74/133 (55.64%), Query Frame = 0


Query: 36  TSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSK 95
           T+ S      ++A+  TR E  + R+ R RKK  GT  +PRLSVF S+K LY  ++DD  
Sbjct: 33  TTMSVVKPFVIEARGNTRVESPKTRNRRSRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFN 92

Query: 96  MHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKV-AFDRGGYPYHG 155
              L   ST+QKSI      T    IE AK+VGE + K+ ++  I+++ ++DR G     
Sbjct: 93  KKCLFYASTLQKSIRGDPPCT---VIEAAKRVGEELIKASIDLKINEISSYDRNGNKRGE 152

Query: 156 RVEALADAAREHG 168
           R++A   A  +HG
Sbjct: 153 RMQAFEIAIAQHG 162

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BLAST of Carg19585 vs. TAIR10
Match: AT3G17626.1 (structural constituent of ribosome)

HSP 1 Score: 58.2 bits (139), Expect = 5.9e-09
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 118 GPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHG 155
           G TIE+AKKVGE I KSC+E GI+KVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

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BLAST of Carg19585 vs. Swiss-Prot
Match: sp|P82195|RK18_SPIOL (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-54
Identity = 121/171 (70.76%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSL-AVQAKATTRREDRQA 60
           M++AT+ LSF  S+ L  SSS +++   QL+ P    +    +L  +QAKA TRREDR A
Sbjct: 1   MAAATS-LSFFHST-LASSSSSSVQ---QLSLPPKFVNFRPQTLPLIQAKAHTRREDRTA 60

Query: 61  RHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGP 120
           RH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DY+AGP
Sbjct: 61  RHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGP 120

Query: 121 TIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           T+EVA+K+GE IAKSCLEKGI+KVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 TVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

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BLAST of Carg19585 vs. Swiss-Prot
Match: sp|Q9SX68|RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-53
Identity = 114/158 (72.15%), Postives = 127/158 (80.38%), Query Frame = 0


Query: 13  SSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQARHSRIRKKVEGTS 72
           S+FLG      L++R     P ++SS    S+ V+AK  T  EDR ARHSRIRKKV GT+
Sbjct: 17  SAFLG----NGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTT 76

Query: 73  ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIEVAKKVGEAIA 132
           ERPRL VFRSNKHLYVQVIDD+KMHTLA+ ST QK ISE  DYT+GPTIEVAKKVGE IA
Sbjct: 77  ERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIA 136

Query: 133 KSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           KSCLEKGI+KVAFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 137 KSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]

BLAST of Carg19585 vs. Swiss-Prot
Match: sp|Q8SAY0|RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 86/120 (71.67%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 51  TTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSIS 110
           +T + DR ARH R+RKKV GT+ERPRLSVFRSNKHLY QVIDD+K  TL + STM KS+S
Sbjct: 51  STPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLS 110

Query: 111 EGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170
           + L+Y+AGPT+EVA+K+GE IAKSCLEKGI+KV FDRGG+ YHGR++ALADAARE+GL F
Sbjct: 111 KDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170

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BLAST of Carg19585 vs. Swiss-Prot
Match: sp|Q5L3S3|RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 53  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD T    IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDST--NNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of Carg19585 vs. Swiss-Prot
Match: sp|P09415|RL18_GEOSE (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.6e-33
Identity = 76/118 (64.41%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 53  RREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R+ RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD T    IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LDST--NNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

[Close]

BLAST of Carg19585 vs. TrEMBL
Match: tr|A0A1S3AXQ6|A0A1S3AXQ6_CUCME (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 3.7e-74
Identity = 151/170 (88.82%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           M+S TAP SFLG+SFL  S SQN+ NR  L+FPATTSSSG+HSL V+AKATTRREDR AR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of Carg19585 vs. TrEMBL
Match: tr|A0A0A0L9A4|A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.7e-72
Identity = 148/170 (87.06%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 1   MSSATAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60
           M+S TAP SFL +SFL  S SQN+ NR  L+FP TTSSSG+HSL V+AKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]

BLAST of Carg19585 vs. TrEMBL
Match: tr|M5XM31|M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 8.6e-55
Identity = 123/168 (73.21%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 5   TAPLSFLGSSFLGGSSSQNLRNRLQLNFPATTSS--SGQHSLAVQAKATTRREDRQARHS 64
           +A +SFLG++    +SSQ L  R +L    TT S      SL V+AKATT+REDR ARH 
Sbjct: 2   SASISFLGTAI---ASSQQLWLRPKLVGVTTTLSPRPQSQSLVVEAKATTKREDRTARHI 61

Query: 65  RIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTIE 124
           RIRKKVEGT ERPRL+VFRSNKH+Y QVIDD+KMHTLA+ STMQK +S+  DYTAGPTIE
Sbjct: 62  RIRKKVEGTPERPRLAVFRSNKHIYAQVIDDTKMHTLASASTMQKPVSDEFDYTAGPTIE 121

Query: 125 VAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           VAKKVGE IAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 122 VAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 166

[Close]

BLAST of Carg19585 vs. TrEMBL
Match: tr|A0A200QSS1|A0A200QSS1_9MAGN (Ribosomal protein L18/L5 OS=Macleaya cordata OX=56857 GN=BVC80_379g21 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 5.6e-54
Identity = 123/169 (72.78%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 13  SSFLGGSSSQNLRNRLQLNFPATTSSSG-----------QHSLAVQAKATTRREDRQARH 72
           +SFLG   SQ L NR   +     S +G             SL + AKA TRREDRQARH
Sbjct: 11  NSFLG---SQKLTNRCSKSSSVVGSGAGAVGVLRTHNNHHPSLVIVAKARTRREDRQARH 70

Query: 73  SRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPTI 132
            RIRKKVEGT ERPRL VFRSNKHLYVQVIDDSKMHTLA+ STMQK ISE LD+T+GPTI
Sbjct: 71  VRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKPISEELDFTSGPTI 130

Query: 133 EVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           EVAKKVGE IAKSCLEKGI KVAFDRGGYPYHGR+EALADAAREHGLQF
Sbjct: 131 EVAKKVGELIAKSCLEKGIVKVAFDRGGYPYHGRIEALADAAREHGLQF 176

[Close]

BLAST of Carg19585 vs. TrEMBL
Match: tr|A0A2P5F078|A0A2P5F078_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_130040 PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-53
Identity = 110/129 (85.27%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 42  HSLAVQAKATTRREDRQARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAA 101
           HSL VQ+KA TR+EDR ARH+RIRKKVEGT ERPRLSVFRSNKHLYVQVIDDSKMHTLA+
Sbjct: 41  HSLVVQSKAKTRQEDRIARHARIRKKVEGTPERPRLSVFRSNKHLYVQVIDDSKMHTLAS 100

Query: 102 VSTMQKSISEGLDYTAGPTIEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALAD 161
            ST+QK ISE  DYT+GPT+EVAKKVGEAIAK+CLEKGI+KVAFDRGGYPYHGRVE+LA+
Sbjct: 101 ASTVQKPISEEFDYTSGPTLEVAKKVGEAIAKACLEKGITKVAFDRGGYPYHGRVESLAN 160

Query: 162 AAREHGLQF 171
           AAREHGLQF
Sbjct: 161 AAREHGLQF 169

The following BLAST results are available for this feature:

BLAST of Carg19585 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528212.1	6.0e-84	99.41	50S ribosomal protein L18, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022979945.1	2.3e-83	99.41	50S ribosomal protein L18, chloroplastic-like [Cucurbita maxima]	[more]
XP_022955675.1	1.9e-82	98.24	50S ribosomal protein L18, chloroplastic-like [Cucurbita moschata]	[more]
XP_008439021.1	5.6e-74	88.82	PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo]	[more]
XP_023538937.1	2.8e-73	88.82	50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19585 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G48350.1	7.1e-55	72.15	Ribosomal L18p/L5e family protein	[more]
AT1G14205.1	6.1e-14	37.59	Ribosomal L18p/L5e family protein	[more]
AT3G17626.1	5.9e-09	72.97	structural constituent of ribosome	[more]

BLAST of Carg19585 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P82195\|RK18_SPIOL	4.4e-54	70.76	50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P...	[more]
sp\|Q9SX68\|RK18_ARATH	1.3e-53	72.15	50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
sp\|Q8SAY0\|RK18_ORYSJ	1.0e-42	71.67	50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|Q5L3S3\|RL18_GEOKA	1.5e-33	65.25	50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ...	[more]
sp\|P09415\|RL18_GEOSE	5.6e-33	64.41	50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1...	[more]

BLAST of Carg19585 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXQ6\|A0A1S3AXQ6_CUCME	3.7e-74	88.82	50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939...	[more]
tr\|A0A0A0L9A4\|A0A0A0L9A4_CUCSA	2.7e-72	87.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1	[more]
tr\|M5XM31\|M5XM31_PRUPE	8.6e-55	73.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G209300 PE=3 SV=1	[more]
tr\|A0A200QSS1\|A0A200QSS1_9MAGN	5.6e-54	72.78	Ribosomal protein L18/L5 OS=Macleaya cordata OX=56857 GN=BVC80_379g21 PE=3 SV=1	[more]
tr\|A0A2P5F078\|A0A2P5F078_9ROSA	1.2e-53	85.27	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_130040 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR005484	Ribosomal_L18
IPR004389	Ribosomal_L18_bac-type

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19585-RA	Carg19585-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.420.100		coord: 51..170 e-value: 1.3E-46 score: 159.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	PANTHER	PTHR12899:SF3	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 38..170
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 64..168 e-value: 3.18225E-44 score: 142.679
None	No IPR available	SUPERFAMILY	SSF53137	Translational machinery components	coord: 53..168
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAM	TIGR00060	TIGR00060	coord: 54..170 e-value: 6.7E-43 score: 143.7
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 52..170 score: 28.141
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 52..170 e-value: 1.2E-46 score: 157.8
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 38..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19585	Cla021845	Watermelon (97103) v1	carwmB0269
Carg19585	Csa3G171790	Cucumber (Chinese Long) v2	carcuB0306
Carg19585	MELO3C006766	Melon (DHL92) v3.5.1	carmeB0280
Carg19585	ClCG05G007000	Watermelon (Charleston Gray)	carwcgB0271
Carg19585	CSPI03G15510	Wild cucumber (PI 183967)	carcpiB0310
Carg19585	Cucsa.252040	Cucumber (Gy14) v1	carcgyB0329
Carg19585	CmaCh06G015960	Cucurbita maxima (Rimu)	carcmaB0393
Carg19585	CmaCh14G015460	Cucurbita maxima (Rimu)	carcmaB0391
Carg19585	CmoCh06G015910	Cucurbita moschata (Rifu)	carcmoB0390
Carg19585	CmoCh14G015820	Cucurbita moschata (Rifu)	carcmoB0388
Carg19585	Lsi05G013720	Bottle gourd (USVL1VR-Ls)	carlsiB253
Carg19585	Cp4.1LG03g12100	Cucurbita pepo (Zucchini)	carcpeB0395
Carg19585	Cp4.1LG08g05470	Cucurbita pepo (Zucchini)	carcpeB0396
Carg19585	CsGy3G015560	Cucumber (Gy14) v2	carcgybB0294
Carg19585	MELO3C006766.2	Melon (DHL92) v3.6.1	carmedB0292
Carg19585	CsaV3_3G015690	Cucumber (Chinese Long) v3	carcucB0309
Carg19585	Cla97C05G088670	Watermelon (97103) v2	carwmbB0287
Carg19585	Bhi01G000838	Wax gourd	carwgoB0365

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None