Cla021845 (gene) Watermelon (97103) v1

NameCla021845
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
Description50S ribosomal protein L18 (AHRD V1 ***- B6TYR5_MAIZE); contains Interpro domain(s) IPR005484 Ribosomal protein L18/L5
LocationChr5 : 6821018 .. 6821925 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGTGAGTTCACTATAACTAAGAATTAATTGATTGATCTACTGAGAAGTTTTTTTTGGTTTTATTATTTACTTACAGAATCATATTGGAGTCATGATAATCTTTAGCTTTCATCTTCCCTTTTCCAAACTTTGTTGCAGTTTTGATGTCTATGTAGATCTTCTTACCTCTACTAGTAAGAGAGCATCCATTAAAATCGGTCCTCTAATTTGGTTAGATATCACTAGAGATTTTGTTATTGAACTTGACAAAAATGAAATAACATAAGAAAAGAAAAACAAAACTATAATAAGTTCCAACAACAATAGCTAGGAAATGTCTTTGCATGGCCATCGAGTTTAGTTATTCAACTAGTTCTTACTTGAGTAGATAAGATCTATCTATATGTTCTTTAGTTATTAAAGAGTTAACTAAAAAATTAAAAATTTAGTCCCTAGACTTAACAAAGTTTACTTACGTCTTTCCTGTCATTCCATGCATTCTCATACATTAACACGACATATGATTTTAACAAATATTGGTTGATTTAGTATGTCACATGGTCATTTATCTAACGGTATTAATGACAAAGCCTACATAGAATTACAAGCCTAATTTAAAGGATGTAATTAAGTTCAGAAACCAAATAGATGTTTGTATGGAAGCAGAATCCTTATTATATGTGGATGATATGGTTTTTACAGGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGTCTGGAGAAAGGGATAACAAAAGTTGCATTCGACCGTGGTGGATATCCATACCATGGTCGTGTAGAAGCGCTTGCTGATGCTGCTCGTGAACATGGTCTTCAATTCTGA

mRNA sequence

ATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGTCTGGAGAAAGGGATAACAAAAGTTGCATTCGACCGTGGTGGATATCCATACCATGGTCGTGTAGAAGCGCTTGCTGATGCTGCTCGTGAACATGGTCTTCAATTCTGA

Coding sequence (CDS)

ATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATTGCAAAATCTTGTCTGGAGAAAGGGATAACAAAAGTTGCATTCGACCGTGGTGGATATCCATACCATGGTCGTGTAGAAGCGCTTGCTGATGCTGCTCGTGAACATGGTCTTCAATTCTGA

Protein sequence

MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
BLAST of Cla021845 vs. Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.9e-30
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLQF 76
           +EALA AAREHGLQF
Sbjct: 156 IEALAAAAREHGLQF 170

BLAST of Cla021845 vs. Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-25
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = 1

Query: 3   TLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVE 62
           TL + STM KS+S+ L+YSAGPT+EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++
Sbjct: 98  TLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIK 157

Query: 63  ALADAAREHGLQF 76
           ALADAARE+GL F
Sbjct: 158 ALADAARENGLDF 170

BLAST of Cla021845 vs. Swiss-Prot
Match: RL18_CALS8 (50S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=rplR PE=3 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-16
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 1

Query: 2   HTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRV 61
           HTL A S+++  I   L  ++  +IE A+ +G  IA+   EKGITKV FDRGGYPYHGRV
Sbjct: 53  HTLVAASSLEPEIKSRL--TSTKSIEAAQYIGRVIAERAKEKGITKVVFDRGGYPYHGRV 112

Query: 62  EALADAAREHGLQF 76
           +ALADAARE GL+F
Sbjct: 113 KALADAAREAGLEF 124

BLAST of Cla021845 vs. Swiss-Prot
Match: RL18_SHELP (50S ribosomal protein L18 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplR PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-16
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1

Query: 4   LAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEA 63
           +AA ST +K++SE L Y+    +E AK VG+ IA+  +EKG+T VAFDR G+ YHGRV A
Sbjct: 47  VAAASTAEKAVSEQLKYTGN--VEAAKAVGKTIAERAIEKGVTVVAFDRSGFKYHGRVAA 106

Query: 64  LADAAREHGLQF 76
           LADAARE GLQF
Sbjct: 107 LADAAREAGLQF 116

BLAST of Cla021845 vs. Swiss-Prot
Match: RL18_GEOSM (50S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-16
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 1

Query: 3   TLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVE 62
           TLA+ ST+   ++EGL Y+    IE A KVG AIAK  LEK IT V FDR G+ YHGR++
Sbjct: 52  TLASASTLLGDVAEGLSYTGN--IEAATKVGAAIAKKALEKEITAVVFDRNGFLYHGRIK 111

Query: 63  ALADAAREHGLQF 76
           ALADAARE+GL F
Sbjct: 112 ALADAARENGLSF 122

BLAST of Cla021845 vs. TrEMBL
Match: A0A0A0L9A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYSAGPTIEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLQF 76
           VEALADAAREHGLQF
Sbjct: 156 VEALADAAREHGLQF 170

BLAST of Cla021845 vs. TrEMBL
Match: M5XM31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-30
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK +S+  DY+AGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 92  MHTLASASTMQKPVSDEFDYTAGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 151

Query: 61  VEALADAAREHGLQF 76
           VEALADAAREHGLQF
Sbjct: 152 VEALADAAREHGLQF 166

BLAST of Cla021845 vs. TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.7e-30
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQK +SE  DYS+GPTIEVAK+VGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 99  MHTLAAVSTMQKLVSEESDYSSGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGR 158

Query: 61  VEALADAAREHGLQF 76
           VEALA+AAREHGLQF
Sbjct: 159 VEALAEAAREHGLQF 173

BLAST of Cla021845 vs. TrEMBL
Match: A0A059D442_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 6.7e-30
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQK +SE  DYS+GPTIEVAK+VGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 99  MHTLAAVSTMQKLVSEESDYSSGPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGR 158

Query: 61  VEALADAAREHGLQF 76
           VEALA+AAREHGLQF
Sbjct: 159 VEALAEAAREHGLQF 173

BLAST of Cla021845 vs. TrEMBL
Match: M1A0E2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004682 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.7e-30
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK ISE  DYSAGPT EVAKKVGE IAK+CLEKGITKVAFDRGGYPYHGR
Sbjct: 88  MHTLASASTMQKPISEEFDYSAGPTAEVAKKVGEVIAKACLEKGITKVAFDRGGYPYHGR 147

Query: 61  VEALADAAREHGLQF 76
           +EALADAAREHGLQF
Sbjct: 148 IEALADAAREHGLQF 162

BLAST of Cla021845 vs. NCBI nr
Match: gi|659077079|ref|XP_008439021.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo])

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLQF 76
           VEALADAAREHGLQF
Sbjct: 156 VEALADAAREHGLQF 170

BLAST of Cla021845 vs. NCBI nr
Match: gi|449459812|ref|XP_004147640.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-34
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLAAVSTMQKSISEGLDYSAGPTIEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 96  MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGR 155

Query: 61  VEALADAAREHGLQF 76
           VEALADAAREHGLQF
Sbjct: 156 VEALADAAREHGLQF 170

BLAST of Cla021845 vs. NCBI nr
Match: gi|645231256|ref|XP_008222310.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume])

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-30
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK +SE  DY+AGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 92  MHTLASASTMQKPVSEEFDYTAGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 151

Query: 61  VEALADAAREHGLQF 76
           VEALADAAREHGLQF
Sbjct: 152 VEALADAAREHGLQF 166

BLAST of Cla021845 vs. NCBI nr
Match: gi|568849589|ref|XP_006478532.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Citrus sinensis])

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-30
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK ISE LDYS+GPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 97  MHTLASASTMQKPISEELDYSSGPTIEVAKKVGEMIAKSCLEKGITKVAFDRGGYPYHGR 156

Query: 61  VEALADAAREHGLQF 76
           ++ALADAAREHGLQF
Sbjct: 157 IQALADAAREHGLQF 171

BLAST of Cla021845 vs. NCBI nr
Match: gi|596288596|ref|XP_007225963.1| (hypothetical protein PRUPE_ppa012509mg [Prunus persica])

HSP 1 Score: 137.9 bits (346), Expect = 7.3e-30
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1

Query: 1   MHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGR 60
           MHTLA+ STMQK +S+  DY+AGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR
Sbjct: 92  MHTLASASTMQKPVSDEFDYTAGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGR 151

Query: 61  VEALADAAREHGLQF 76
           VEALADAAREHGLQF
Sbjct: 152 VEALADAAREHGLQF 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RK18_ARATH1.9e-3085.3350S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 S... [more]
RK18_ORYSJ1.4e-2573.9750S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL1... [more]
RL18_CALS83.5e-1658.1150S ribosomal protein L18 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4... [more]
RL18_SHELP3.5e-1659.7250S ribosomal protein L18 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN... [more]
RL18_GEOSM4.6e-1660.2750S ribosomal protein L18 OS=Geobacter sp. (strain M21) GN=rplR PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L9A4_CUCSA5.8e-3498.67Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171790 PE=3 SV=1[more]
M5XM31_PRUPE5.1e-3088.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012509mg PE=3 SV=1[more]
A0A058ZTZ3_EUCGR6.7e-3089.33Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1[more]
A0A059D442_EUCGR6.7e-3089.33Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1[more]
M1A0E2_SOLTU8.7e-3088.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400004682 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
gi|659077079|ref|XP_008439021.1|6.4e-34100.00PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo][more]
gi|449459812|ref|XP_004147640.1|8.4e-3498.67PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis sativus][more]
gi|645231256|ref|XP_008222310.1|3.3e-3089.33PREDICTED: 50S ribosomal protein L18, chloroplastic [Prunus mume][more]
gi|568849589|ref|XP_006478532.1|3.3e-3089.33PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Citrus sinensis][more]
gi|596288596|ref|XP_007225963.1|7.3e-3088.00hypothetical protein PRUPE_ppa012509mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005484Ribosomal_L18
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048653 anther development
biological_process GO:0006412 translation
biological_process GO:0048513 animal organ development
biological_process GO:0040007 growth
biological_process GO:0071669 plant-type cell wall organization or biogenesis
biological_process GO:0065008 regulation of biological quality
biological_process GO:0009926 auxin polar transport
biological_process GO:0010015 root morphogenesis
biological_process GO:0016043 cellular component organization
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0065007 biological regulation
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008097 5S rRNA binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU29185watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla021845Cla021845.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU29185WMU29185transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 2..75
score: 5.2
NoneNo IPR availableGENE3DG3DSA:3.30.420.100coord: 2..75
score: 2.5
NoneNo IPR availablePANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 1..75
score: 4.7
NoneNo IPR availableunknownSSF53137Translational machinery componentscoord: 2..73
score: 5.01