Lsi05G003050 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGACGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGACTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCGAATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTGGTGA ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGACGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGACTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCGAATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTGGTGA ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGACGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGACTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCGAATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTGGTGA MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
BLAST of Lsi05G003050 vs. TrEMBL
Match: A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.0e-58 Identity = 114/150 (76.00%), Postives = 126/150 (84.00%), Query Frame = 1
BLAST of Lsi05G003050 vs. TrEMBL
Match: A0A061EG52_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18 Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = 1
BLAST of Lsi05G003050 vs. TrEMBL
Match: U5FGW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17 Identity = 64/145 (44.14%), Postives = 80/145 (55.17%), Query Frame = 1
BLAST of Lsi05G003050 vs. TrEMBL
Match: B9T3Z8_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 7.4e-17 Identity = 68/142 (47.89%), Postives = 78/142 (54.93%), Query Frame = 1
BLAST of Lsi05G003050 vs. TrEMBL
Match: A0A0D2TXY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14 Identity = 52/114 (45.61%), Postives = 61/114 (53.51%), Query Frame = 1
BLAST of Lsi05G003050 vs. TAIR10
Match: AT3G03350.2 (AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09 Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1
BLAST of Lsi05G003050 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein) HSP 1 Score: 57.4 bits (137), Expect = 8.7e-09 Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1
BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|778680858|ref|XP_011651408.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus]) HSP 1 Score: 232.6 bits (592), Expect = 4.3e-58 Identity = 114/150 (76.00%), Postives = 126/150 (84.00%), Query Frame = 1
BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|590652126|ref|XP_007033069.1| (Uncharacterized protein TCM_019232 [Theobroma cacao]) HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18 Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = 1
BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|566211035|ref|XP_006372591.1| (hypothetical protein POPTR_0017s03030g [Populus trichocarpa]) HSP 1 Score: 95.5 bits (236), Expect = 8.2e-17 Identity = 64/145 (44.14%), Postives = 80/145 (55.17%), Query Frame = 1
BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|255584475|ref|XP_002532967.1| (PREDICTED: formin-like protein 3 [Ricinus communis]) HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16 Identity = 68/142 (47.89%), Postives = 78/142 (54.93%), Query Frame = 1
BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|697159392|ref|XP_009588454.1| (PREDICTED: leucine-rich repeat extensin-like protein 1 [Nicotiana tomentosiformis]) HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14 Identity = 60/153 (39.22%), Postives = 75/153 (49.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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