Lsi05G003050 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G003050
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionNutrient reservoir, putative
Locationchr05 : 3904859 .. 3905302 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGACGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGACTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCGAATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTGGTGA

mRNA sequence

ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGACGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGACTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCGAATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTGGTGA

Coding sequence (CDS)

ATGGCGCCTTCCGCCGCCATTTTACTCTCTCTACCTTTCTTCTTCCTCCTCATTTTCTTCGCCCACGCTCAAACCTCCTCTCCGATATCGGTAGATCCGCAAAATTCCGACGCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCACCGCCGCCGCCGCCACCGCCAACTCCTCCTCCTTGTACCCCAACGCTGTTGACTCGACCACCGCCTCCTAGGTTTATTTATACATCGTCATCACCTCTACCACCACCTCCCAGGTTTATTTATACAACCGGCATTCCCGGTAACATGTACCAGGTCGATGCGAATAATCGTTGGTATTACTTCTCCGGCACGAGGAGGAAGCGACCGGCCATGGCGGTGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTCATGGGGTTTGGTAAGTGGTGA

Protein sequence

MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALGCGALHLMGFGKW
BLAST of Lsi05G003050 vs. TrEMBL
Match: A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.0e-58
Identity = 114/150 (76.00%), Postives = 126/150 (84.00%), Query Frame = 1

Query: 1   MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPP 60
           MAP AAILLS  F   L+  A++QTSSPI VDPQN DAEIKCGSCPCSNPC+QQL PPPP
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61  PPPTPPP---CTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVDANNRWYYF 120
           PPP PPP   CTPT+ +RPPPPRFIYT+SSP PPPPRF YTTG+PGN+Y++DANN WYYF
Sbjct: 63  PPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYF 122

Query: 121 SGTRRKRPAMAVVVVALGCGALHLMGFGKW 148
           SGTRR RP MA V VA+GCGALHLMGF KW
Sbjct: 123 SGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

BLAST of Lsi05G003050 vs. TrEMBL
Match: A0A061EG52_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-18
Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = 1

Query: 7   ILLSLPFFFLLIFFAHAQTSSPIS--VDPQNSDAEIKCGSCPCSNPCVQQ-LPPPPPPPP 66
           I L L   FL+   A  +    I   V PQ    EIKCG+CPC NPC QQ LPPPPPPPP
Sbjct: 17  IFLILSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPPPPPP 76

Query: 67  TPPPCTPTLLTRPPPPRFIYTSSSPL-PPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRR 126
           +PPP          PPRF Y +  P+ PPPPRF Y TG+PG +Y  DA++RW +FS    
Sbjct: 77  SPPP----------PPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFSSA-- 136

Query: 127 KRPAMAVVVVALGCGALHLM 143
            R  + +++++ G G L L+
Sbjct: 137 GRDDIGILLLSFGFGLLGLL 144

BLAST of Lsi05G003050 vs. TrEMBL
Match: U5FGW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 64/145 (44.14%), Postives = 80/145 (55.17%), Query Frame = 1

Query: 1   MAPSAAILLSLPFFFLLIF-FAHAQTSSPI--SVDPQNSDAEIKCGSCPCSNPCVQQLPP 60
           M P   + L L F    I   + A  +  +  ++ PQ  DA IKCGSCPC NPC Q  PP
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 61  PPPPPPTPPP-----CTPTLLTRPPPPRFIYTSSSPL-PPPPRFIYTTG-IPGNMYQVDA 120
           PPPPPP PPP     CTP     PPPP   Y   SPL PPPPRF Y T  +PG++Y+ D 
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPY--CSPLAPPPPRFYYVTSTVPGSVYETDP 120

Query: 121 NNRWYYFSGTRRKRPAMAVVVVALG 136
            NRW  + G R+      ++++ LG
Sbjct: 121 YNRWGLYDGARQNAVTWLLLLIGLG 143

BLAST of Lsi05G003050 vs. TrEMBL
Match: B9T3Z8_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.4e-17
Identity = 68/142 (47.89%), Postives = 78/142 (54.93%), Query Frame = 1

Query: 13  FFFLLIFFAH---AQTSSPISVD------PQNSDAEIKCGSCPCSNPCVQQLPPPPPPPP 72
           FF  LIFFA    A TS    +D      PQ  DA IKCGSCPC NPC Q LPPPPPPPP
Sbjct: 6   FFLFLIFFAVPSCAATSVTKKLDQTLVPQPQEPDAGIKCGSCPCVNPCAQ-LPPPPPPPP 65

Query: 73  TPPPCTPTLLTRPPPPRFIYTSSSPL-PPPPRFIYTTGIP--GNMYQVDANNRWYYFSGT 132
                       PPPP+ +Y +  PL PPPPRFIY TG+P  GN+Y  D    W Y+S  
Sbjct: 66  ------------PPPPKTVYCT--PLAPPPPRFIYVTGVPGNGNLYVTDPYENWDYYSDA 125

Query: 133 RRKRPAMAVVVVALGCGALHLM 143
                 ++  + A G G LHLM
Sbjct: 126 THN--VVSWFLAAFGFGVLHLM 130

BLAST of Lsi05G003050 vs. TrEMBL
Match: A0A0D2TXY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.9e-14
Identity = 52/114 (45.61%), Postives = 61/114 (53.51%), Query Frame = 1

Query: 31  VDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPPCTPTLLTRPPPPRFIYTSSSPLP 90
           V PQ    EIKCG+CPC NPC QQ  PPPPPP                 RF Y ++ P P
Sbjct: 42  VVPQAPTTEIKCGACPCVNPCGQQSLPPPPPP-----------------RFTYCNTLPSP 101

Query: 91  -PPPRFIYTTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVALG-CGALHLM 143
            PPPRF Y TG+PG +Y VD ++RW YFS   R      V  + L   GALH +
Sbjct: 102 PPPPRFYYVTGMPGQLYGVDPDDRWRYFSNGGRNFVGGFVAFIWLWVVGALHYL 138

BLAST of Lsi05G003050 vs. TAIR10
Match: AT3G03350.2 (AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-09
Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1

Query: 75  RPPPPRFIYTS-SSPLPPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRRKRPAMAVVVVA 134
           RPPPPR  Y S SS  PPPP+++Y TG+PG +Y+ + +++W Y S   R      +V+V 
Sbjct: 29  RPPPPRKTYCSKSSSSPPPPKYMYVTGVPGELYRTEPDDQWGYNSSVNRNLVKCLLVIVI 88

Query: 135 LGCGALH 141
           +G G ++
Sbjct: 89  VGFGVIN 95

BLAST of Lsi05G003050 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 57.4 bits (137), Expect = 8.7e-09
Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 1

Query: 22  HAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPPPPPTPPP--CTPTLLTRPPPP 81
           +  +SS  S++ +  D   +     CS  C+Q  PPP PPPP+PPP  C P     PPPP
Sbjct: 29  NGSSSSDASLEARKLD---EVDPIKCSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPP 88

Query: 82  RFIYTSSSPLPPPPRFIYTTGIPGNMYQVD 110
           + + +S  P PPP  F+Y TG PGN+Y VD
Sbjct: 89  KKV-SSYCPPPPPANFLYITGPPGNLYPVD 114

BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|778680858|ref|XP_011651408.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-58
Identity = 114/150 (76.00%), Postives = 126/150 (84.00%), Query Frame = 1

Query: 1   MAPSAAILLSLPFFFLLIFFAHAQTSSPISVDPQNSDAEIKCGSCPCSNPCVQQLPPPPP 60
           MAP AAILLS  F   L+  A++QTSSPI VDPQN DAEIKCGSCPCSNPC+QQL PPPP
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61  PPPTPPP---CTPTLLTRPPPPRFIYTSSSPLPPPPRFIYTTGIPGNMYQVDANNRWYYF 120
           PPP PPP   CTPT+ +RPPPPRFIYT+SSP PPPPRF YTTG+PGN+Y++DANN WYYF
Sbjct: 63  PPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYF 122

Query: 121 SGTRRKRPAMAVVVVALGCGALHLMGFGKW 148
           SGTRR RP MA V VA+GCGALHLMGF KW
Sbjct: 123 SGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|590652126|ref|XP_007033069.1| (Uncharacterized protein TCM_019232 [Theobroma cacao])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = 1

Query: 7   ILLSLPFFFLLIFFAHAQTSSPIS--VDPQNSDAEIKCGSCPCSNPCVQQ-LPPPPPPPP 66
           I L L   FL+   A  +    I   V PQ    EIKCG+CPC NPC QQ LPPPPPPPP
Sbjct: 17  IFLILSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPPPPPP 76

Query: 67  TPPPCTPTLLTRPPPPRFIYTSSSPL-PPPPRFIYTTGIPGNMYQVDANNRWYYFSGTRR 126
           +PPP          PPRF Y +  P+ PPPPRF Y TG+PG +Y  DA++RW +FS    
Sbjct: 77  SPPP----------PPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFSSA-- 136

Query: 127 KRPAMAVVVVALGCGALHLM 143
            R  + +++++ G G L L+
Sbjct: 137 GRDDIGILLLSFGFGLLGLL 144

BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|566211035|ref|XP_006372591.1| (hypothetical protein POPTR_0017s03030g [Populus trichocarpa])

HSP 1 Score: 95.5 bits (236), Expect = 8.2e-17
Identity = 64/145 (44.14%), Postives = 80/145 (55.17%), Query Frame = 1

Query: 1   MAPSAAILLSLPFFFLLIF-FAHAQTSSPI--SVDPQNSDAEIKCGSCPCSNPCVQQLPP 60
           M P   + L L F    I   + A  +  +  ++ PQ  DA IKCGSCPC NPC Q  PP
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 61  PPPPPPTPPP-----CTPTLLTRPPPPRFIYTSSSPL-PPPPRFIYTTG-IPGNMYQVDA 120
           PPPPPP PPP     CTP     PPPP   Y   SPL PPPPRF Y T  +PG++Y+ D 
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPY--CSPLAPPPPRFYYVTSTVPGSVYETDP 120

Query: 121 NNRWYYFSGTRRKRPAMAVVVVALG 136
            NRW  + G R+      ++++ LG
Sbjct: 121 YNRWGLYDGARQNAVTWLLLLIGLG 143

BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|255584475|ref|XP_002532967.1| (PREDICTED: formin-like protein 3 [Ricinus communis])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 68/142 (47.89%), Postives = 78/142 (54.93%), Query Frame = 1

Query: 13  FFFLLIFFAH---AQTSSPISVD------PQNSDAEIKCGSCPCSNPCVQQLPPPPPPPP 72
           FF  LIFFA    A TS    +D      PQ  DA IKCGSCPC NPC Q LPPPPPPPP
Sbjct: 6   FFLFLIFFAVPSCAATSVTKKLDQTLVPQPQEPDAGIKCGSCPCVNPCAQ-LPPPPPPPP 65

Query: 73  TPPPCTPTLLTRPPPPRFIYTSSSPL-PPPPRFIYTTGIP--GNMYQVDANNRWYYFSGT 132
                       PPPP+ +Y +  PL PPPPRFIY TG+P  GN+Y  D    W Y+S  
Sbjct: 66  ------------PPPPKTVYCT--PLAPPPPRFIYVTGVPGNGNLYVTDPYENWDYYSDA 125

Query: 133 RRKRPAMAVVVVALGCGALHLM 143
                 ++  + A G G LHLM
Sbjct: 126 THN--VVSWFLAAFGFGVLHLM 130

BLAST of Lsi05G003050 vs. NCBI nr
Match: gi|697159392|ref|XP_009588454.1| (PREDICTED: leucine-rich repeat extensin-like protein 1 [Nicotiana tomentosiformis])

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-14
Identity = 60/153 (39.22%), Postives = 75/153 (49.02%), Query Frame = 1

Query: 16  LLIFFAHAQTSSPISVDPQNS-------DAEIKCGSCPCSNPCVQQLPPP----PPPPPT 75
           L +    A+ S+ I+ D  N+       D  IKCG CPC  PC QQL PP    PPPPP 
Sbjct: 6   LTVLIVSAKASTAITSDNDNNVDGPLMPDPSIKCGECPCGKPCNQQLTPPISSSPPPPPP 65

Query: 76  PPP----CTPTLLTRPPPPRFIYTSSSPL--------PPPPRFIYTTGIPGNMYQVDANN 135
           P      C P +   PP PRFIY ++ P         PPPPRFIY T  PGN+Y  D  N
Sbjct: 66  PKASNTYCPPVIQQNPPSPRFIYFTAPPAIQQSKPSSPPPPRFIYFTAPPGNLYSTDPFN 125

Query: 136 RWYYFSGTRRKRPAMAVVVVALGCGALHLMGFG 146
              Y     R    +  +++ +GCG L L+  G
Sbjct: 126 LQIYSGALTRNPLCLNSLLLLVGCGILELLVLG 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7R0_CUCSA3.0e-5876.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1[more]
A0A061EG52_THECC1.4e-1845.71Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1[more]
U5FGW6_POPTR5.7e-1744.14Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1[more]
B9T3Z8_RICCO7.4e-1747.89Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1[more]
A0A0D2TXY8_GOSRA5.9e-1445.61Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G03350.21.0e-0941.79 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G23040.18.7e-0943.33 hydroxyproline-rich glycoprotein family protein[more]
Match NameE-valueIdentityDescription
gi|778680858|ref|XP_011651408.1|4.3e-5876.00PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
gi|590652126|ref|XP_007033069.1|1.9e-1845.71Uncharacterized protein TCM_019232 [Theobroma cacao][more]
gi|566211035|ref|XP_006372591.1|8.2e-1744.14hypothetical protein POPTR_0017s03030g [Populus trichocarpa][more]
gi|255584475|ref|XP_002532967.1|1.1e-1647.89PREDICTED: formin-like protein 3 [Ricinus communis][more]
gi|697159392|ref|XP_009588454.1|1.0e-1439.22PREDICTED: leucine-rich repeat extensin-like protein 1 [Nicotiana tomentosiformi... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G003050.1Lsi05G003050.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35094FAMILY NOT NAMEDcoord: 30..145
score: 7.6
NoneNo IPR availablePANTHERPTHR35094:SF2SUBFAMILY NOT NAMEDcoord: 30..145
score: 7.6