CSPI03G21850 (gene) Wild cucumber (PI 183967)

NameCSPI03G21850
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionTransmembrane protein, putative
LocationChr3 : 18304947 .. 18305767 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCAAATGGACCAAAATACCCTTCTGTTCAAAGTATTCCCATGCACCTAACTCAACCAAAATAACAAAACCTACACTCACCTTCGCATTAACTCTCTCTCTCTCTCTCTCTCTCCACAAACTCAATCCTCATCGATTTTAGAGCTTTTTCTTTACATGAAAATGGCGCCTTCCGCCGCCATTTTACTCTTCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATTCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCGCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGGCCGGGCATGGCGGCAGTTGTGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGAAGGATGAATAGCCATATAAAGCAAGTTAATGTGTTGAATTTGGTCTAGTTACTAAAAGAAATATATTCACTCTTAGTTCATCATAAAGTATAAGTATATATATATATATATATATTATGATCTTAATTATTAGATGTCTATTTATTTACCTTTTATTTCAACAAAATTTATTTATATTTTCTTTCAATATAATTTTGGGGTTATATA

mRNA sequence

ATGAAAATGGCGCCTTCCGCCGCCATTTTACTCTTCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATTCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCGCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGGCCGGGCATGGCGGCAGTTGTGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGA

Coding sequence (CDS)

ATGAAAATGGCGCCTTCCGCCGCCATTTTACTCTTCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATTCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCGCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGGCCGGGCATGGCGGCAGTTGTGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGA
BLAST of CSPI03G21850 vs. TrEMBL
Match: A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.3e-76
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 1

Query: 1   MKMAPSAAILLFFSFLSHLLLLANSQTSSPILVDPQNSDAEIKCGSCPCSNPCIQQLSPP 60
           MKMAP AAILL FSFLSHLLLLANSQTSSPILVDPQN DAEIKCGSCPCSNPCIQQLSPP
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPP 60

Query: 61  PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY 120
           PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY
Sbjct: 61  PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY 120

Query: 121 YFSGTRRTRPGMAAVVVAIGCGALHLMGFSKW 153
           YFSGTRRTRPGMAAV VAIGCGALHLMGFSKW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

BLAST of CSPI03G21850 vs. TrEMBL
Match: A0A061EG52_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.7e-17
Identity = 62/140 (44.29%), Postives = 77/140 (55.00%), Query Frame = 1

Query: 9   ILLFFSFLSHLLLLANSQTSSPILVDPQNSDAEIKCGSCPCSNPCIQQLSPPPPPPPPPP 68
           ++L  SFL  ++           +V PQ    EIKCG+CPC NPC QQ  PPPPPPPP P
Sbjct: 19  LILSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPPPPPPSP 78

Query: 69  PPSPCTPTVSSRPPPPRFIYTTSSP-APPPPRFTYTTGVPGNLYEIDANNSWYYFSGTRR 128
           PP            PPRF Y    P  PPPPRF Y TGVPG LY  DA++ W +FS   R
Sbjct: 79  PP------------PPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFSSAGR 138

Query: 129 TRPGMAAVVVAIGCGALHLM 148
              G+  ++++ G G L L+
Sbjct: 139 DDIGI--LLLSFGFGLLGLL 144

BLAST of CSPI03G21850 vs. TrEMBL
Match: U5FGW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.6e-16
Identity = 67/151 (44.37%), Postives = 83/151 (54.97%), Query Frame = 1

Query: 3   MAPSAAILLFFSFLSHLLLLANSQTSSPIL---VDPQNSDAEIKCGSCPCSNPCIQQLSP 62
           M P   + L  SFL   ++  +  + +  L   + PQ  DA IKCGSCPC NPC Q   P
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 63  PPPPPPPPPPPSP--CTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTG-VPGNLYEIDAN 122
           PPPPPPPPPPP    CTP     PPPP   Y  S  APPPPRF Y T  VPG++YE D  
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPY-CSPLAPPPPRFYYVTSTVPGSVYETDPY 120

Query: 123 NSWYYFSGTRRTRPGMAAVVVAIGCGALHLM 148
           N W  + G R+    +  +++ IG G   L+
Sbjct: 121 NRWGLYDGARQN--AVTWLLLLIGLGVTELL 148

BLAST of CSPI03G21850 vs. TrEMBL
Match: B9T3Z8_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 62/140 (44.29%), Postives = 74/140 (52.86%), Query Frame = 1

Query: 10  LLFFSFLSHLLLLANSQTSSPILVDPQNSDAEIKCGSCPCSNPCIQQLSPPPPPPPPPPP 69
           L+FF+  S        +    ++  PQ  DA IKCGSCPC NPC Q    PPPPPPPP  
Sbjct: 10  LIFFAVPSCAATSVTKKLDQTLVPQPQEPDAGIKCGSCPCVNPCAQL---PPPPPPPP-- 69

Query: 70  PSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVP--GNLYEIDANNSWYYFSGTRR 129
                      PPPP+ +Y T   APPPPRF Y TGVP  GNLY  D   +W Y+S    
Sbjct: 70  -----------PPPPKTVYCTPL-APPPPRFIYVTGVPGNGNLYVTDPYENWDYYSDA-- 129

Query: 130 TRPGMAAVVVAIGCGALHLM 148
           T   ++  + A G G LHLM
Sbjct: 130 THNVVSWFLAAFGFGVLHLM 130

BLAST of CSPI03G21850 vs. TrEMBL
Match: A0A0D2TXY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.0e-14
Identity = 57/148 (38.51%), Postives = 76/148 (51.35%), Query Frame = 1

Query: 8   AILLFFSFLSHLLLLANSQTSS------PILVDPQNSDAEIKCGSCPCSNPCIQQLSPPP 67
           ++L+ F  LS +  +  + ++       P++V PQ    EIKCG+CPC NPC QQ  PPP
Sbjct: 12  SVLMIFPILSIIFAVPINASTKILEEVVPVVV-PQAPTTEIKCGACPCVNPCGQQSLPPP 71

Query: 68  PPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPP-RFTYTTGVPGNLYEIDANNSWY 127
           PPP                    RF Y  + P+PPPP RF Y TG+PG LY +D ++ W 
Sbjct: 72  PPP--------------------RFTYCNTLPSPPPPPRFYYVTGMPGQLYGVDPDDRWR 131

Query: 128 YFS-GTRRTRPGMAAVVVAIGCGALHLM 148
           YFS G R    G  A +     GALH +
Sbjct: 132 YFSNGGRNFVGGFVAFIWLWVVGALHYL 138

BLAST of CSPI03G21850 vs. TAIR10
Match: AT3G03350.2 (AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-09
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1

Query: 76  TVSSRPPPPRFIYTT-SSPAPPPPRFTYTTGVPGNLYEIDANNSWYYFSGTRRTRPGMAA 135
           T   RPPPPR  Y + SS +PPPP++ Y TGVPG LY  + ++ W Y S   R       
Sbjct: 25  TTPLRPPPPRKTYCSKSSSSPPPPKYMYVTGVPGELYRTEPDDQWGYNSSVNRNLVKCLL 84

Query: 136 VVVAIGCGALH 146
           V+V +G G ++
Sbjct: 85  VIVIVGFGVIN 95

BLAST of CSPI03G21850 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = 1

Query: 22  LANSQTSSPILVDPQNSDAEIKCGSCPCSNPCIQQLSPPPPPPPPPPPPSPCTPTVSSRP 81
           L N  +SS   ++ +  D   +     CS  CIQ   PP PPPP PPPP+ C P  +  P
Sbjct: 27  LINGSSSSDASLEARKLD---EVDPIKCSPSCIQNPPPPSPPPPSPPPPA-CPPPPALPP 86

Query: 82  PPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEID 115
           PPP+ + ++  P PPP  F Y TG PGNLY +D
Sbjct: 87  PPPKKV-SSYCPPPPPANFLYITGPPGNLYPVD 114

BLAST of CSPI03G21850 vs. NCBI nr
Match: gi|778680858|ref|XP_011651408.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 292.0 bits (746), Expect = 6.2e-76
Identity = 148/152 (97.37%), Postives = 148/152 (97.37%), Query Frame = 1

Query: 1   MKMAPSAAILLFFSFLSHLLLLANSQTSSPILVDPQNSDAEIKCGSCPCSNPCIQQLSPP 60
           MKMAP AAILL FSFLSHLLLLANSQTSSPILVDPQN DAEIKCGSCPCSNPCIQQLSPP
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPP 60

Query: 61  PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY 120
           PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY
Sbjct: 61  PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY 120

Query: 121 YFSGTRRTRPGMAAVVVAIGCGALHLMGFSKW 153
           YFSGTRRTRPGMAAV VAIGCGALHLMGFSKW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

BLAST of CSPI03G21850 vs. NCBI nr
Match: gi|731417884|ref|XP_010660469.1| (PREDICTED: WAS/WASL-interacting protein family member 3-like [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 8.5e-17
Identity = 71/151 (47.02%), Postives = 85/151 (56.29%), Query Frame = 1

Query: 5   PSAAILLFFSFLSHLLLLANSQTSSP---ILVDPQNSDAEIKCGSCPCSNPCIQQLSPPP 64
           P   ++L    LS  L+ A S +S     ILV PQ  D+ IKC +CPC NPC  Q SPPP
Sbjct: 14  PLLLMMLMLILLSAPLINATSTSSEKHDQILV-PQVPDSSIKCMTCPCVNPCSDQHSPPP 73

Query: 65  PPPPPPPPPSP-----CTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDAN 124
           PPPPPPPPP P     C   V   PPPPRFIY T    PPPPRFTY    PGNLY  + +
Sbjct: 74  PPPPPPPPPPPPRTQDCGQQV---PPPPRFIYITE---PPPPRFTYIINEPGNLYATNPS 133

Query: 125 NSWYYFSGTRRTRPGMAAVVVAIGCGALHLM 148
           N  +Y +  R    G    +V +GCG L ++
Sbjct: 134 NLGFYSASGRNVVIGF---MVLVGCGILDVL 154

BLAST of CSPI03G21850 vs. NCBI nr
Match: gi|590652126|ref|XP_007033069.1| (Uncharacterized protein TCM_019232 [Theobroma cacao])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 62/140 (44.29%), Postives = 77/140 (55.00%), Query Frame = 1

Query: 9   ILLFFSFLSHLLLLANSQTSSPILVDPQNSDAEIKCGSCPCSNPCIQQLSPPPPPPPPPP 68
           ++L  SFL  ++           +V PQ    EIKCG+CPC NPC QQ  PPPPPPPP P
Sbjct: 19  LILSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPPPPPPSP 78

Query: 69  PPSPCTPTVSSRPPPPRFIYTTSSP-APPPPRFTYTTGVPGNLYEIDANNSWYYFSGTRR 128
           PP            PPRF Y    P  PPPPRF Y TGVPG LY  DA++ W +FS   R
Sbjct: 79  PP------------PPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFSSAGR 138

Query: 129 TRPGMAAVVVAIGCGALHLM 148
              G+  ++++ G G L L+
Sbjct: 139 DDIGI--LLLSFGFGLLGLL 144

BLAST of CSPI03G21850 vs. NCBI nr
Match: gi|566211035|ref|XP_006372591.1| (hypothetical protein POPTR_0017s03030g [Populus trichocarpa])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 67/151 (44.37%), Postives = 83/151 (54.97%), Query Frame = 1

Query: 3   MAPSAAILLFFSFLSHLLLLANSQTSSPIL---VDPQNSDAEIKCGSCPCSNPCIQQLSP 62
           M P   + L  SFL   ++  +  + +  L   + PQ  DA IKCGSCPC NPC Q   P
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 63  PPPPPPPPPPPSP--CTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTG-VPGNLYEIDAN 122
           PPPPPPPPPPP    CTP     PPPP   Y  S  APPPPRF Y T  VPG++YE D  
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPY-CSPLAPPPPRFYYVTSTVPGSVYETDPY 120

Query: 123 NSWYYFSGTRRTRPGMAAVVVAIGCGALHLM 148
           N W  + G R+    +  +++ IG G   L+
Sbjct: 121 NRWGLYDGARQN--AVTWLLLLIGLGVTELL 148

BLAST of CSPI03G21850 vs. NCBI nr
Match: gi|697159392|ref|XP_009588454.1| (PREDICTED: leucine-rich repeat extensin-like protein 1 [Nicotiana tomentosiformis])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 62/148 (41.89%), Postives = 79/148 (53.38%), Query Frame = 1

Query: 20  LLLANSQTSSPILVDPQNS-------DAEIKCGSCPCSNPCIQQLSPP---PPPPPPPPP 79
           +L+ +++ S+ I  D  N+       D  IKCG CPC  PC QQL+PP    PPPPPPP 
Sbjct: 8   VLIVSAKASTAITSDNDNNVDGPLMPDPSIKCGECPCGKPCNQQLTPPISSSPPPPPPPK 67

Query: 80  PSP--CTPTVSSRPPPPRFIYTTSSPA--------PPPPRFTYTTGVPGNLYEIDANNSW 139
            S   C P +   PP PRFIY T+ PA        PPPPRF Y T  PGNLY  D  N  
Sbjct: 68  ASNTYCPPVIQQNPPSPRFIYFTAPPAIQQSKPSSPPPPRFIYFTAPPGNLYSTDPFNLQ 127

Query: 140 YYFSGTRRTRPGMAAVVVAIGCGALHLM 148
            Y     R    + ++++ +GCG L L+
Sbjct: 128 IYSGALTRNPLCLNSLLLLVGCGILELL 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7R0_CUCSA4.3e-7697.37Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1[more]
A0A061EG52_THECC7.7e-1744.29Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1[more]
U5FGW6_POPTR8.6e-1644.37Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1[more]
B9T3Z8_RICCO3.3e-1544.29Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1[more]
A0A0D2TXY8_GOSRA8.0e-1438.51Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G03350.22.4e-0942.25 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G23040.11.7e-0743.01 hydroxyproline-rich glycoprotein family protein[more]
Match NameE-valueIdentityDescription
gi|778680858|ref|XP_011651408.1|6.2e-7697.37PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
gi|731417884|ref|XP_010660469.1|8.5e-1747.02PREDICTED: WAS/WASL-interacting protein family member 3-like [Vitis vinifera][more]
gi|590652126|ref|XP_007033069.1|1.1e-1644.29Uncharacterized protein TCM_019232 [Theobroma cacao][more]
gi|566211035|ref|XP_006372591.1|1.2e-1544.37hypothetical protein POPTR_0017s03030g [Populus trichocarpa][more]
gi|697159392|ref|XP_009588454.1|1.2e-1541.89PREDICTED: leucine-rich repeat extensin-like protein 1 [Nicotiana tomentosiformi... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21850.1CSPI03G21850.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35094FAMILY NOT NAMEDcoord: 35..151
score: 2.9
NoneNo IPR availablePANTHERPTHR35094:SF2SUBFAMILY NOT NAMEDcoord: 35..151
score: 2.9