MELO3C020289.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020289.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Nutrient reservoir, putative
Location	chr06 : 14821671 .. 14822278 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACATGAAAATGCCCTCTTCCGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCTCCTCCTTCTTCTCGCCCACTCTCAAACCTCCTCCCCGATATCAATAGATCCTCAAAATCCCGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAATTATCACCGCCACCGCCACCGCCTCCTTCTCCTTGTACCCCAACGGTGTCCTCTCGACCACCGCCTCCTAGGTTTATTTATACCATGTCATCACCTGCACCACCGCCTCCAAGGTTTACTTACACGACGGGTGTTCCCGGTAATTTATACGAGATTGATGCGAATAATAGCTGGTATTACTTCTCTGGCACGACGAGGACGCGGCCTGGCATGGCGGCGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGAAGGATGAATAGCCATATAAAGAAAATTATTGATTAATGTGTTGAATTTGGTCTAATTACTAAAAGAAATATTTACTCTTAGTTCATAAAGTATTAAGTATATATATGTATGCTATATGATCTTAATGATTAGATGTCTATTTATTTACCTTTTCTCAAC

mRNA sequence

ATTACATGAAAATGCCCTCTTCCGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCTCCTCCTTCTTCTCGCCCACTCTCAAACCTCCTCCCCGATATCAATAGATCCTCAAAATCCCGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAATTATCACCGCCACCGCCACCGCCTCCTTCTCCTTGTACCCCAACGGTGTCCTCTCGACCACCGCCTCCTAGGTTTATTTATACCATGTCATCACCTGCACCACCGCCTCCAAGGTTTACTTACACGACGGGTGTTCCCGGTAATTTATACGAGATTGATGCGAATAATAGCTGGTATTACTTCTCTGGCACGACGAGGACGCGGCCTGGCATGGCGGCGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGAAGGATGAATAGCCATATAAAGAAAATTATTGATTAATGTGTTGAATTTGGTCTAATTACTAAAAGAAATATTTACTCTTAGTTCATAAAGTATTAAGTATATATATGTATGCTATATGATCTTAATGATTAGATGTCTATTTATTTACCTTTTCTCAAC

Coding sequence (CDS)

ATGAAAATGCCCTCTTCCGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCTCCTCCTTCTTCTCGCCCACTCTCAAACCTCCTCCCCGATATCAATAGATCCTCAAAATCCCGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAATTATCACCGCCACCGCCACCGCCTCCTTCTCCTTGTACCCCAACGGTGTCCTCTCGACCACCGCCTCCTAGGTTTATTTATACCATGTCATCACCTGCACCACCGCCTCCAAGGTTTACTTACACGACGGGTGTTCCCGGTAATTTATACGAGATTGATGCGAATAATAGCTGGTATTACTTCTCTGGCACGACGAGGACGCGGCCTGGCATGGCGGCGGTTGTGGTGGCGCTTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGA

Protein sequence

MKMPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLSPPPPPPPSPCTPTVSSRPPPPRFIYTMSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYFSGTTRTRPGMAAVVVALGCGALHLMGFSKW

Homology

[Close]

BLAST of MELO3C020289.2 vs. NCBI nr
Match: XP_011651408.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN57843.1 hypothetical protein Csa_3G346900 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 6.0e-40
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MKMPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLS-- 60
           MKM   AAILLSFSFLS LLLLA+SQTSSPI +DPQNPDAEIKCGSCPCSNPCIQQLS  
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 61  ---XXXXXXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYEIDANNSWY 120
              XXXXXXXXX T TVS XXXXXXXXXXXXXXXXXXXXXXXXXXXX NLYEIDANNSWY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 121 YFSGTTRTRPGMAAVVVALGCGALHLMGFSKW 148
           YFSGT RTRPGMAAV VA+GCGALHLMGFSKW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of MELO3C020289.2 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 1.9e-25
Identity = 106/147 (72.11%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 1   MKMPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKM  SAAI LS S     L LA SQ  SP  +DPQ+P++EIKCGSCPCSNPC++Q  XX
Sbjct: 1   MKMAPSAAIPLSLSXXXXXLHLADSQPFSP--VDPQDPNSEIKCGSCPCSNPCVKQFPXX 60

Query: 61  XXXXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYEIDANNSWYYFSGT 120
           XXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXX GNLY+IDANN WYYFSGT
Sbjct: 61  XXXXXXXNCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGT 120

Query: 121 TRTRPGMAAVVVALGCGALHLMGFSKW 148
           TR RP  A +VVALGCGAL+LM F KW
Sbjct: 121 TRNRPATAVLVVALGCGALNLMAFGKW 145

[Close]

BLAST of MELO3C020289.2 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 106/145 (73.10%), Postives = 116/145 (80.00%), Query Frame = 0


Query: 3   MPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLSXXXX 62
           M  SAAI LS SFL   L LA+SQ  SP  +DPQ+P++EIKCGSCPCSNPC++Q  XXXX
Sbjct: 1   MAPSAAIPLSLSFLFXXLHLANSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQFPXXXX 60

Query: 63  XXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYEIDANNSWYYFSGTTR 122
           XXXXX  P    XXXXXXXXXXXXXXXXXXXXXXXXXXX GNLY+IDANN WYYFSGTTR
Sbjct: 61  XXXXXCKP-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTR 120

Query: 123 TRPGMAAVVVALGCGALHLMGFSKW 148
                AA+VVALGCGAL+LM F KW
Sbjct: 121 NWSATAALVVALGCGALNLMAFGKW 142

[Close]

BLAST of MELO3C020289.2 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.9 bits (198), Expect = 4.1e-12
Identity = 69/147 (46.94%), Postives = 75/147 (51.02%), Query Frame = 0


Query: 3   MPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGS-CPCSNPCIQQLSXXX 62
           M  SAAI LS       LLL+  QTS PIS  P +PDAEI CGS  PCSNP ++QL    
Sbjct: 1   MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDAEINCGSTTPCSNPSVRQLQ--- 60

Query: 63  XXXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYEIDANNSWYYFSGTT 122
                                  XXXXXXXXXX         +LY+ D  N WYYFSG  
Sbjct: 61  -------------------PSPPXXXXXXXXXXFVYTMGVPSDLYQNDEKNRWYYFSGAV 118

Query: 123 RTRPGMAA-VVVALGCGALHLMGFSKW 148
              P MAA VVV L CGAL LM F KW
Sbjct: 121 GKPPAMAALVVVGLACGALDLMVFGKW 118

[Close]

BLAST of MELO3C020289.2 vs. NCBI nr
Match: XP_022949046.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 74/147 (50.34%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 3   MPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCP-CSNPCIQQLSXXX 62
           M  SAAI LS       LLL+  QTS PIS  P +PD EI C S   CSNP +QQL    
Sbjct: 1   MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTLCSNPSVQQLQPSP 60

Query: 63  XXXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYEIDANNSWYYFSGTT 122
           XXXXXXX     +             XXXXXXXXXXX     +LY+ D  N WYYFSG  
Sbjct: 61  XXXXXXXXXXXXT--------YTTLSXXXXXXXXXXXTGVPSDLYQNDEKNRWYYFSGAV 120

Query: 123 RTRPGMAA-VVVALGCGALHLMGFSKW 148
              P MAA VVV L CGAL L+ F KW
Sbjct: 121 GKPPAMAALVVVGLACGALDLIVFGKW 132

[Close]

BLAST of MELO3C020289.2 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.0e-40
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MKMPSSAAILLSFSFLSLLLLLAHSQTSSPISIDPQNPDAEIKCGSCPCSNPCIQQLS-- 60
           MKM   AAILLSFSFLS LLLLA+SQTSSPI +DPQNPDAEIKCGSCPCSNPCIQQLS  
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 61  ---XXXXXXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYEIDANNSWY 120
              XXXXXXXXX T TVS XXXXXXXXXXXXXXXXXXXXXXXXXXXX NLYEIDANNSWY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 121 YFSGTTRTRPGMAAVVVALGCGALHLMGFSKW 148
           YFSGT RTRPGMAAV VA+GCGALHLMGFSKW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of MELO3C020289.2 vs. TrEMBL
Match: tr|A0A2I4EB49|A0A2I4EB49_9ROSI (probable pathogenesis-related protein ARB_02861 OS=Juglans regia OX=51240 GN=LOC108987996 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 35  PQNPDAEIKCGSCPCSNPCIQQLSXXXXXXXXXXTPTVSSXXXXXXXXXXXXXXXXXXXX 94
           PQ  +AEIKCG+CPC NPC QQ   XXXXXXXXX      XXXXXXXXXXXXXXXXXXX 
Sbjct: 15  PQEANAEIKCGTCPCVNPCAQQ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR 74

Query: 95  XXXXXXXXGNLYEIDANNSWYYFSGTTRTRPGMAAVVVALGCGALHLM 143
                   GNLYE D  N+W Y+SG  +   G+  +++ + CG + L+
Sbjct: 75  FIYVTGVPGNLYETDPYNTWVYYSGAGQNVIGIMRLLLLVVCGVVELI 119

The following BLAST results are available for this feature:

BLAST of MELO3C020289.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651408.1	6.0e-40	87.50	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN578...	[more]
XP_023528316.1	1.9e-25	72.11	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022984145.1	3.5e-24	73.10	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023525793.1	4.1e-12	46.94	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]
XP_022949046.1	2.9e-10	50.34	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of MELO3C020289.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C020289.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C020289.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	4.0e-40	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]
tr\|A0A2I4EB49\|A0A2I4EB49_9ROSI	3.5e-04	54.63	probable pathogenesis-related protein ARB_02861 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020289.2.1	MELO3C020289.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..90
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 30..141
None	No IPR available	PANTHER	PTHR35094:SF2	SUBFAMILY NOT NAMED	coord: 30..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020289.2	Csa3G346900	Cucumber (Chinese Long) v2	cumedB239
MELO3C020289.2	CSPI03G21850	Wild cucumber (PI 183967)	cpimedB240
MELO3C020289.2	Cucsa.012670	Cucumber (Gy14) v1	cgymedB338
MELO3C020289.2	CmaCh14G008520	Cucurbita maxima (Rimu)	cmamedB274
MELO3C020289.2	CmoCh14G008660	Cucurbita moschata (Rifu)	cmomedB261
MELO3C020289.2	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C020289.2	Cp4.1LG03g05700	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C020289.2	Cla013170	Watermelon (97103) v1	medwmB448
MELO3C020289.2	ClCG05G010960	Watermelon (Charleston Gray)	medwcgB417
MELO3C020289.2	Cla97C05G093250	Watermelon (97103) v2	medwmbB424
MELO3C020289.2	Carg24226	Silver-seed gourd	carmedB0185
MELO3C020289.2	Carg07444	Silver-seed gourd	carmedB0771
MELO3C020289.2	CsaV3_3G021620	Cucumber (Chinese Long) v3	cucmedB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020289.2	Wax gourd	medwgoB531
MELO3C020289.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C020289.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C020289.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C020289.2	Cucurbita pepo (Zucchini)	cpemedB630