Cla97C05G093250 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G093250
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	leucine-rich repeat extensin-like protein 1
Location	Cla97Chr05 : 11981015 .. 11981557 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCCCCTTCCCACTATCCCCATACACTCAACATAAGCAAATAACAGCCCAACACTTGACCTCCACATTAATTCCCTTTCTCTCCAAAACTCAATCCTCATCGATTTCAGAGCTCCTCCTCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTACTCTCTCTTCCTTTCTTCATCCTGTTGGTCCACGCCCAAACCTCCTCTCCACAAAATCCCGACGCTGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCGCCGCCGCCACCTCCTCCTCCTTGTACCCCAACTCTGCCGTCTCGACCACCGCCTCCTAGGTTTATTTATACATCATCGTCGTCTCCACCACCACCTCCAAGGTTTATTTATACTACCGGCATTCCCGGTGACCTCTACCAGGTCGATGCGAATAATCATTGGTATTACTTCTCCGGCACGACGGGGAAGCGGCCGGCCATGGCAGCGGTTGTGGTGGCGCTTGGCTGTGGAACTTTGCATCTCATGGGGTTTGGTAAGTGGTGA

mRNA sequence

ATGGCCTTCCCCTTCCCACTATCCCCATACACTCAACATAAGCAAATAACAGCCCAACACTTGACCTCCACATTAATTCCCTTTCTCTCCAAAACTCAATCCTCATCGATTTCAGAGCTCCTCCTCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTACTCTCTCTTCCTTTCTTCATCCTGTTGGTCCACGCCCAAACCTCCTCTCCACAAAATCCCGACGCTGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCGCCGCCGCCACCTCCTCCTCCTTGTACCCCAACTCTGCCGTCTCGACCACCGCCTCCTAGGTTTATTTATACATCATCGTCGTCTCCACCACCACCTCCAAGGTTTATTTATACTACCGGCATTCCCGGTGACCTCTACCAGGTCGATGCGAATAATCATTGGTATTACTTCTCCGGCACGACGGGGAAGCGGCCGGCCATGGCAGCGGTTGTGGTGGCGCTTGGCTGTGGAACTTTGCATCTCATGGGGTTTGGTAAGTGGTGA

Coding sequence (CDS)

ATGGCCTTCCCCTTCCCACTATCCCCATACACTCAACATAAGCAAATAACAGCCCAACACTTGACCTCCACATTAATTCCCTTTCTCTCCAAAACTCAATCCTCATCGATTTCAGAGCTCCTCCTCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTACTCTCTCTTCCTTTCTTCATCCTGTTGGTCCACGCCCAAACCTCCTCTCCACAAAATCCCGACGCTGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAACAACTACCGCCGCCGCCACCTCCTCCTCCTTGTACCCCAACTCTGCCGTCTCGACCACCGCCTCCTAGGTTTATTTATACATCATCGTCGTCTCCACCACCACCTCCAAGGTTTATTTATACTACCGGCATTCCCGGTGACCTCTACCAGGTCGATGCGAATAATCATTGGTATTACTTCTCCGGCACGACGGGGAAGCGGCCGGCCATGGCAGCGGTTGTGGTGGCGCTTGGCTGTGGAACTTTGCATCTCATGGGGTTTGGTAAGTGGTGA

Protein sequence

MAFPFPLSPYTQHKQITAQHLTSTLIPFLSKTQSSSISELLLYLKMAPSAAILLSLPFFILLVHAQTSSPQNPDAEIKCGSCPCSNPCVQQLPPPPPPPPCTPTLPSRPPPPRFIYTSSSSPPPPPRFIYTTGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW

Homology

[Close]

BLAST of Cla97C05G093250 vs. NCBI nr
Match: XP_011651408.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN57843.1 hypothetical protein Csa_3G346900 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 3.3e-24
Identity = 106/152 (69.74%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 44  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQ---- 103
           +KMAP AAILLS  F    +LL ++QTSS     PQNPDAEIKCGSCPCSNPC+QQ    
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 104 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWY 163
              XXXXXXXXX  X   XXXXXXXXXXXXXXXXXXXXXXXXXX    +LY++DANN WY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 164 YFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW 181
           YFSGT   RP MAAV VA+GCG LHLMGF KW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of Cla97C05G093250 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.5 bits (293), Expect = 4.8e-23
Identity = 104/145 (71.72%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 44  LKMAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQ--XXXX 103
           +KMAPSAAI LSL      +H   S       PQ+P++EIKCGSCPCSNPCV+Q  XXXX
Sbjct: 1   MKMAPSAAIPLSLSXXXXXLHLADSQPFSPVDPQDPNSEIKCGSCPCSNPCVKQFPXXXX 60

Query: 104 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWYYFSGTTG 163
           XXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  PG+LYQ+DANN WYYFSGTT 
Sbjct: 61  XXXXXNCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTR 120

Query: 164 KRPAMAAVVVALGCGTLHLMGFGKW 181
            RPA A +VVALGCG L+LM FGKW
Sbjct: 121 NRPATAVLVVALGCGALNLMAFGKW 145

[Close]

BLAST of Cla97C05G093250 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 114.8 bits (286), Expect = 3.1e-22
Identity = 101/142 (71.13%), Postives = 110/142 (77.46%), Query Frame = 0


Query: 46  MAPSAAILLSLPFFILLVHAQTS------SPQNPDAEIKCGSCPCSNPCVQQ-XXXXXXX 105
           MAPSAAI LSL F    +H   S       PQ+P++EIKCGSCPCSNPCV+Q  XXXXXX
Sbjct: 1   MAPSAAIPLSLSFLFXXLHLANSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPXXXXXX 60

Query: 106 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWYYFSGTTGKRP 165
           XXX    XXXXXXXXXXXXXXXXXXXXXXXXXXX  PG+LYQ+DANN WYYFSGTT    
Sbjct: 61  XXXCKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTRNWS 120

Query: 166 AMAAVVVALGCGTLHLMGFGKW 181
           A AA+VVALGCG L+LM FGKW
Sbjct: 121 ATAALVVALGCGALNLMAFGKW 142

[Close]

BLAST of Cla97C05G093250 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-16
Identity = 76/142 (53.52%), Postives = 79/142 (55.63%), Query Frame = 0


Query: 46  MAPSAAILLSLPFFILLVHAQTS-----SPQNPDAEIKCGS-CPCSNPCVQQXXXXXXXX 105
           MAPSAAI LSL    LL   QTS     SP +PDAEI CGS  PCSNP V+Q        
Sbjct: 1   MAPSAAIFLSL----LLSFIQTSPPISASPLDPDAEINCGSTTPCSNPSVRQ-------- 60

Query: 106 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWYYFSGTTGKRPA 165
                             XXXXXXXXXX     G+P DLYQ D  N WYYFSG  GK PA
Sbjct: 61  ------------LQPSPPXXXXXXXXXXFVYTMGVPSDLYQNDEKNRWYYFSGAVGKPPA 118

Query: 166 MAA-VVVALGCGTLHLMGFGKW 181
           MAA VVV L CG L LM FGKW
Sbjct: 121 MAALVVVGLACGALDLMVFGKW 118

[Close]

BLAST of Cla97C05G093250 vs. NCBI nr
Match: XP_022949046.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 88.2 bits (217), Expect = 3.1e-14
Identity = 86/142 (60.56%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 46  MAPSAAILLSLPFFILLVHAQTS-----SPQNPDAEIKCGSCP-CSNPCVQQXXXXXXXX 105
           MAPSAAI LSL    LL   QTS     SP +PD EI C S   CSNP VQQ        
Sbjct: 1   MAPSAAIFLSL----LLSFIQTSPPISASPLDPDTEINCDSTTLCSNPSVQQ------LQ 60

Query: 106 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWYYFSGTTGKRPA 165
              XXXXXXXXXXXX      XXXXXXXXXXX G+P DLYQ D  N WYYFSG  GK PA
Sbjct: 61  PSPXXXXXXXXXXXXTYTTLSXXXXXXXXXXXTGVPSDLYQNDEKNRWYYFSGAVGKPPA 120

Query: 166 MAA-VVVALGCGTLHLMGFGKW 181
           MAA VVV L CG L L+ FGKW
Sbjct: 121 MAALVVVGLACGALDLIVFGKW 132

[Close]

BLAST of Cla97C05G093250 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 106/152 (69.74%), Postives = 115/152 (75.66%), Query Frame = 0


Query: 44  LKMAPSAAILLSLPF---FILLVHAQTSS-----PQNPDAEIKCGSCPCSNPCVQQ---- 103
           +KMAP AAILLS  F    +LL ++QTSS     PQNPDAEIKCGSCPCSNPC+QQ    
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 104 ---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWY 163
              XXXXXXXXX  X   XXXXXXXXXXXXXXXXXXXXXXXXXX    +LY++DANN WY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 164 YFSGTTGKRPAMAAVVVALGCGTLHLMGFGKW 181
           YFSGT   RP MAAV VA+GCG LHLMGF KW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of Cla97C05G093250 vs. TrEMBL
Match: tr|A0A2I4EB49|A0A2I4EB49_9ROSI (probable pathogenesis-related protein ARB_02861 OS=Juglans regia OX=51240 GN=LOC108987996 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 68/113 (60.18%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 66  QTSSPQNPDAEIKCGSCPCSNPCVQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 125
           QTS PQ  +AEIKCG+CPC NPC QQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 11  QTSVPQEANAEIKCGTCPCVNPCAQQ-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 70

Query: 126 XXXXXXXGIPGDLYQVDANNHWYYFSGTTGKRPAMAAVVVALGCGTLHLMGFG 179
           X      G+PG+LY+ D  N W Y+SG       +  +++ + CG + L+  G
Sbjct: 71  XRFIYVTGVPGNLYETDPYNTWVYYSGAGQNVIGIMRLLLLVVCGVVELIVIG 122

[Close]

BLAST of Cla97C05G093250 vs. TrEMBL
Match: tr|A0A2C9WJS4|A0A2C9WJS4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115700 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 66/139 (47.48%), Postives = 85/139 (61.15%), Query Frame = 0


Query: 51  AILLSLPFFILLVHAQTSS--------------PQNPDAEIKCGSCPCSNPCVQQXXXXX 110
           ++L++LPFF +L    +++              PQ PD  IKCGSCPC NPC   XXXXX
Sbjct: 5   SLLMALPFFFILFAVPSAAANVTKKLDQTLEPLPQEPDTGIKCGSCPCVNPCALXXXXXX 64

Query: 111 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIPGDLYQVDANNHWYYFSGTTGK 170
           XXXXXXXXXXXXXXXXXXXXXXXX             +PG+LY VD  ++W Y+ G   +
Sbjct: 65  XXXXXXXXXXXXXXXXXXXXXXXXCIYVTC-------VPGNLYVVDPYDNWDYYGG--AR 124

Query: 171 RPAMAAVVVALGCGTLHLM 176
           +  +  +++  GCG LHLM
Sbjct: 125 KNVVTGLLLLAGCGALHLM 134

The following BLAST results are available for this feature:

BLAST of Cla97C05G093250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651408.1	3.3e-24	69.74	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN578...	[more]
XP_023528316.1	4.8e-23	71.72	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022984145.1	3.1e-22	71.13	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023525793.1	1.9e-16	53.52	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]
XP_022949046.1	3.1e-14	60.56	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of Cla97C05G093250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	2.2e-24	69.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]
tr\|A0A2I4EB49\|A0A2I4EB49_9ROSI	2.7e-06	60.18	probable pathogenesis-related protein ARB_02861 OS=Juglans regia OX=51240 GN=LOC...	[more]
tr\|A0A2C9WJS4\|A0A2C9WJS4_MANES	1.0e-05	47.48	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G115700 PE=4 SV=...	[more]

BLAST of Cla97C05G093250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G093250 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G093250.1	Cla97C05G093250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 66..174

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G093250	Cla013170	Watermelon (97103) v1	wmwmbB206
Cla97C05G093250	Csa3G346900	Cucumber (Chinese Long) v2	cuwmbB218
Cla97C05G093250	MELO3C020289	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G093250	ClCG05G010960	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G093250	CSPI03G21850	Wild cucumber (PI 183967)	cpiwmbB224
Cla97C05G093250	Cucsa.012670	Cucumber (Gy14) v1	cgywmbB351
Cla97C05G093250	CmaCh14G008520	Cucurbita maxima (Rimu)	cmawmbB264
Cla97C05G093250	CmoCh14G008660	Cucurbita moschata (Rifu)	cmowmbB244
Cla97C05G093250	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G093250	MELO3C020289.2	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G093250	Carg24226	Silver-seed gourd	carwmbB0181
Cla97C05G093250	Carg07444	Silver-seed gourd	carwmbB0795
Cla97C05G093250	CsaV3_3G021620	Cucumber (Chinese Long) v3	cucwmbB220
Cla97C05G093250	Bhi01G001348	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G093250	Cucumber (Gy14) v2	cgybwmbB209
Cla97C05G093250	Cucurbita maxima (Rimu)	cmawmbB473
Cla97C05G093250	Cucurbita moschata (Rifu)	cmowmbB454