Carg24226 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24226
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_191 : 54299 .. 54721 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTCGCCGGTCGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

mRNA sequence

ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTCGCCGGTCGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

Coding sequence (CDS)

ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTCGCCGGTCGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

Protein sequence

MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

Homology

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BLAST of Carg24226 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 176.8 bits (447), Expect = 5.2e-41
Identity = 129/142 (90.85%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFP--XXXX 60
           MAPSAAIPLSLSFLF  LHLA+SQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFP  XXXX
Sbjct: 1   MAPSAAIPLSLSFLFXXLHLANSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPXXXXXX 60

Query: 61  XXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYQIDANNRWYYFSGTTRNQP 120
           XX     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNLYQIDANNRWYYFSGTTRN  
Sbjct: 61  XXXCKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTRNWS 120

Query: 121 ATAALVVALGCGALNLMAFGKW 141
           ATAALVVALGCGALNLMAFGKW
Sbjct: 121 ATAALVVALGCGALNLMAFGKW 142

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BLAST of Carg24226 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 2.6e-40
Identity = 129/143 (90.21%), Postives = 130/143 (90.91%), Query Frame = 0


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFP---XXX 60
           MAPSAAIPLSLS     LHLADSQP SPVDPQDPNSEIKCGSCPCSNPCVKQFP   XXX
Sbjct: 3   MAPSAAIPLSLSXXXXXLHLADSQPFSPVDPQDPNSEIKCGSCPCSNPCVKQFPXXXXXX 62

Query: 61  XXXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYQIDANNRWYYFSGTTRNQ 120
           XXXN  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GNLYQIDANNRWYYFSGTTRN+
Sbjct: 63  XXXNCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTRNR 122

Query: 121 PATAALVVALGCGALNLMAFGKW 141
           PATA LVVALGCGALNLMAFGKW
Sbjct: 123 PATAVLVVALGCGALNLMAFGKW 145

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BLAST of Carg24226 vs. NCBI nr
Match: XP_011651408.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN57843.1 hypothetical protein Csa_3G346900 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 6.3e-23
Identity = 104/150 (69.33%), Postives = 115/150 (76.67%), Query Frame = 0


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQFPXXXX 60
           MAP AAI LS SFL   L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q  XXXX
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXXXX 62

Query: 61  XXN--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYQIDANNRWYYF 120
           XX          X   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX NLY+IDANN WYYF
Sbjct: 63  XXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYYF 122

Query: 121 SGTTRNQPATAALVVALGCGALNLMAFGKW 141
           SGT R +P  AA+ VA+GCGAL+LM F KW
Sbjct: 123 SGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

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BLAST of Carg24226 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.2 bits (204), Expect = 7.8e-13
Identity = 67/142 (47.18%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGS-CPCSNPCVKQFPXXXXX 60
           MAPSAAI     FL L L    + P     P DP++EI CGS  PCSNP V+Q       
Sbjct: 1   MAPSAAI-----FLSLLLSFIQTSPPISASPLDPDAEINCGSTTPCSNPSVRQL------ 60

Query: 61  XNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYQIDANNRWYYFSGTTRNQPA 120
                             XXXXXXXXXX         +LYQ D  NRWYYFSG     PA
Sbjct: 61  -------------QPSPPXXXXXXXXXXFVYTMGVPSDLYQNDEKNRWYYFSGAVGKPPA 118

Query: 121 TAAL-VVALGCGALNLMAFGKW 141
            AAL VV L CGAL+LM FGKW
Sbjct: 121 MAALVVVGLACGALDLMVFGKW 118

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BLAST of Carg24226 vs. NCBI nr
Match: XP_022949046.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 76.3 bits (186), Expect = 9.5e-11
Identity = 77/142 (54.23%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCP-CSNPCVKQFPXXXXX 60
           MAPSAAI     FL L L    + P     P DP++EI C S   CSNP V+Q       
Sbjct: 1   MAPSAAI-----FLSLLLSFIQTSPPISASPLDPDTEINCDSTTLCSNPSVQQL-----Q 60

Query: 61  XNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYQIDANNRWYYFSGTTRNQPA 120
            + XXXXXXXXXXXX      XXXXXXXXXXX     +LYQ D  NRWYYFSG     PA
Sbjct: 61  PSPXXXXXXXXXXXXTYTTLSXXXXXXXXXXXTGVPSDLYQNDEKNRWYYFSGAVGKPPA 120

Query: 121 TAAL-VVALGCGALNLMAFGKW 141
            AAL VV L CGAL+L+ FGKW
Sbjct: 121 MAALVVVGLACGALDLIVFGKW 132

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BLAST of Carg24226 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.2e-23
Identity = 104/150 (69.33%), Postives = 115/150 (76.67%), Query Frame = 0


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQFPXXXX 60
           MAP AAI LS SFL   L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q  XXXX
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXXXX 62

Query: 61  XXN--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLYQIDANNRWYYF 120
           XX          X   XXXXXXXXXXXXXXXXXXXXXXXXXXXXX NLY+IDANN WYYF
Sbjct: 63  XXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYYF 122

Query: 121 SGTTRNQPATAALVVALGCGALNLMAFGKW 141
           SGT R +P  AA+ VA+GCGAL+LM F KW
Sbjct: 123 SGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of Carg24226 vs. TrEMBL
Match: tr|A0A2I4EB49|A0A2I4EB49_9ROSI (probable pathogenesis-related protein ARB_02861 OS=Juglans regia OX=51240 GN=LOC108987996 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.1e-06
Identity = 62/108 (57.41%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 31  PQDPNSEIKCGSCPCSNPCVKQFPXXXXXXNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 90
           PQ+ N+EIKCG+CPC NPC +Q  XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX    
Sbjct: 15  PQEANAEIKCGTCPCVNPCAQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFIY 74

Query: 91  XXXXXGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFG 139
                GNLY+ D  N W Y+SG  +N      L++ + CG + L+  G
Sbjct: 75  VTGVPGNLYETDPYNTWVYYSGAGQNVIGIMRLLLLVVCGVVELIVIG 122

The following BLAST results are available for this feature:

BLAST of Carg24226 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984145.1	5.2e-41	90.85	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023528316.1	2.6e-40	90.21	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_011651408.1	6.3e-23	69.33	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN578...	[more]
XP_023525793.1	7.8e-13	47.18	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]
XP_022949046.1	9.5e-11	54.23	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of Carg24226 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24226 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24226 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	4.2e-23	69.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]
tr\|A0A2I4EB49\|A0A2I4EB49_9ROSI	6.1e-06	57.41	probable pathogenesis-related protein ARB_02861 OS=Juglans regia OX=51240 GN=LOC...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24226-RA	Carg24226-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 30..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24226	Cla013170	Watermelon (97103) v1	carwmB0166
Carg24226	MELO3C020289	Melon (DHL92) v3.5.1	carmeB0181
Carg24226	ClCG05G010960	Watermelon (Charleston Gray)	carwcgB0168
Carg24226	CmaCh14G008520	Cucurbita maxima (Rimu)	carcmaB0240
Carg24226	CmoCh14G008660	Cucurbita moschata (Rifu)	carcmoB0248
Carg24226	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24226	Cp4.1LG03g05700	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24226	MELO3C020289.2	Melon (DHL92) v3.6.1	carmedB0185
Carg24226	Cla97C05G093250	Watermelon (97103) v2	carwmbB0181

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24226	Carg07444	Silver-seed gourd	carcarB213

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24226	Cucurbita maxima (Rimu)	carcmaB0241
Carg24226	Cucurbita moschata (Rifu)	carcmoB0249
Carg24226	Cucurbita pepo (Zucchini)	carcpeB0256
Carg24226	Wax gourd	carwgoB0227