Cp4.1LG03g05700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g05700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 4501747 .. 4502184 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCTTCTCGCCCGTTGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCACCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCAGGTTTATTTATACAGCGCTGTCTCCACCACCACCTCCAAGGTTTATTTATACAACAGGTGTACCCGGTAACCTGTATCAGATTGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCGGCCAGCCACGGCGGTGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

mRNA sequence

ATGAAAATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCTTCTCGCCCGTTGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCACCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCAGGTTTATTTATACAGCGCTGTCTCCACCACCACCTCCAAGGTTTATTTATACAACAGGTGTACCCGGTAACCTGTATCAGATTGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCGGCCAGCCACGGCGGTGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

Coding sequence (CDS)

ATGAAAATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCTTCTCGCCCGTTGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCACCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCAGGTTTATTTATACAGCGCTGTCTCCACCACCACCTCCAAGGTTTATTTATACAACAGGTGTACCCGGTAACCTGTATCAGATTGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCGGCCAGCCACGGCGGTGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

Protein sequence

MKMAPSAAIPLSLSFLFLFLHLADSQPFSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPALPPPPPPPRFIYTALSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNRPATAVLVVALGCGALNLMAFGKW
Homology
[Close]
BLAST of Cp4.1LG03g05700 vs. TrEMBL
Match: A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.7e-45
Identity = 105/152 (69.08%), Postives = 116/152 (76.32%), Query Frame = 1 

Query: 1   MKMAPSAAIPLSLSFLFLFLHLADSQPFSP--VDPQDPNSEIKCGSCPCSNPCVKQFPPP 60
           MKMAP AAI LS SFL   L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q  PP
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPP 60

Query: 61  PPPPPPPN----CKPALPPPPPPPRFIYTALSP-PPPPRFIYTTGVPGNLYQIDANNRWY 120
           PPPPPPP     C P +   PPPPRFIYT  SP PPPPRF YTTGVPGNLY+IDANN WY
Sbjct: 61  PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY 120

Query: 121 YFSGTTRNRPATAVLVVALGCGALNLMAFGKW 146
           YFSGT R RP  A + VA+GCGAL+LM F KW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]
BLAST of Cp4.1LG03g05700 vs. TrEMBL
Match: A0A061EG52_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.7e-18
Identity = 65/136 (47.79%), Postives = 80/136 (58.82%), Query Frame = 1 

Query: 11  LSLSFLFLFLHLADSQPFSP----VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPN 70
           L LS  FL   +A ++        V PQ P +EIKCG+CPC NPC +Q  PPPPPPPP  
Sbjct: 19  LILSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPPPPPPS- 78

Query: 71  CKPALPPPPPPPRFIYTALSP--PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNRPA 130
                  PPPPPRF Y    P  PPPPRF Y TGVPG LY  DA++RW +FS  +  R  
Sbjct: 79  -------PPPPPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFS--SAGRDD 138

Query: 131 TAVLVVALGCGALNLM 141
             +L+++ G G L L+
Sbjct: 139 IGILLLSFGFGLLGLL 144

[Close]
BLAST of Cp4.1LG03g05700 vs. TrEMBL
Match: U5FGW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.3e-17
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 1 

Query: 3   MAPSAAIPLSLSFLFL-FLHLADSQPFSPVD----PQDPNSEIKCGSCPCSNPCVKQFPP 62
           M P   + L LSFL    + ++ +     +D    PQ+P++ IKCGSCPC NPC +  PP
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 63  PPPPPPP------PNCKPALPPPPPPPRFIYTALSPPPPPRFIYTTG-VPGNLYQIDANN 122
           PPPPPPP      P C P  PPPPPPP   Y +   PPPPRF Y T  VPG++Y+ D  N
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPYCSPLAPPPPRFYYVTSTVPGSVYETDPYN 120

Query: 123 RWYYFSGTTRNRPATAVLVVALG 134
           RW  + G  +N     +L++ LG
Sbjct: 121 RWGLYDGARQNAVTWLLLLIGLG 143

[Close]
BLAST of Cp4.1LG03g05700 vs. TrEMBL
Match: B9T3Z8_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-16
Identity = 56/110 (50.91%), Postives = 65/110 (59.09%), Query Frame = 1 

Query: 33  PQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPALPPPPPPPRFIYTALSPPPPPR 92
           PQ+P++ IKCGSCPC NPC  Q PPPPPPPPPP           PP+ +Y     PPPPR
Sbjct: 35  PQEPDAGIKCGSCPCVNPCA-QLPPPPPPPPPP-----------PPKTVYCTPLAPPPPR 94

Query: 93  FIYTTGVP--GNLYQIDANNRWYYFSGTTRNRPATAVLVVALGCGALNLM 141
           FIY TGVP  GNLY  D    W Y+S  T N    +  + A G G L+LM
Sbjct: 95  FIYVTGVPGNGNLYVTDPYENWDYYSDATHN--VVSWFLAAFGFGVLHLM 130

[Close]
BLAST of Cp4.1LG03g05700 vs. TrEMBL
Match: A0A0D2TXY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.1e-15
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 31  VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPALPPPPPPPRFIY--TALSPP 90
           V PQ P +EIKCG+CPC NPC +Q  PPPPPP                RF Y  T  SPP
Sbjct: 42  VVPQAPTTEIKCGACPCVNPCGQQSLPPPPPP----------------RFTYCNTLPSPP 101

Query: 91  PPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRN 122
           PPPRF Y TG+PG LY +D ++RW YFS   RN
Sbjct: 102 PPPRFYYVTGMPGQLYGVDPDDRWRYFSNGGRN 118

[Close]
BLAST of Cp4.1LG03g05700 vs. TAIR10
Match: AT3G03350.2 (AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-08
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 71  LPPPPPPPRFIYTALSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNRPATAVLVV 130
           L PPPP   +   + S PPPP+++Y TGVPG LY+ + +++W Y S   RN     +++V
Sbjct: 28  LRPPPPRKTYCSKSSSSPPPPKYMYVTGVPGELYRTEPDDQWGYNSSVNRNLVKCLLVIV 87

Query: 131 ALGCGALN 139
            +G G +N
Sbjct: 88  IVGFGVIN 95

[Close]
BLAST of Cp4.1LG03g05700 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1 

Query: 47  CSNPCVKQFPPPPPPPP---PPNCKPALPPPPPPPRFIYTALSPPPPPRFIYTTGVPGNL 106
           CS  C++  PPP PPPP   PP C P    PPPPP+ + +   PPPP  F+Y TG PGNL
Sbjct: 51  CSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYCPPPPPANFLYITGPPGNL 110

Query: 107 YQID 108
           Y +D
Sbjct: 111 YPVD 114

[Close]
BLAST of Cp4.1LG03g05700 vs. NCBI nr
Match: gi|778680858|ref|XP_011651408.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-45
Identity = 105/152 (69.08%), Postives = 116/152 (76.32%), Query Frame = 1 

Query: 1   MKMAPSAAIPLSLSFLFLFLHLADSQPFSP--VDPQDPNSEIKCGSCPCSNPCVKQFPPP 60
           MKMAP AAI LS SFL   L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q  PP
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPP 60

Query: 61  PPPPPPPN----CKPALPPPPPPPRFIYTALSP-PPPPRFIYTTGVPGNLYQIDANNRWY 120
           PPPPPPP     C P +   PPPPRFIYT  SP PPPPRF YTTGVPGNLY+IDANN WY
Sbjct: 61  PPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWY 120

Query: 121 YFSGTTRNRPATAVLVVALGCGALNLMAFGKW 146
           YFSGT R RP  A + VA+GCGAL+LM F KW
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]
BLAST of Cp4.1LG03g05700 vs. NCBI nr
Match: gi|590652126|ref|XP_007033069.1| (Uncharacterized protein TCM_019232 [Theobroma cacao])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-17
Identity = 65/136 (47.79%), Postives = 80/136 (58.82%), Query Frame = 1 

Query: 11  LSLSFLFLFLHLADSQPFSP----VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPN 70
           L LS  FL   +A ++        V PQ P +EIKCG+CPC NPC +Q  PPPPPPPP  
Sbjct: 19  LILSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPPPPPPS- 78

Query: 71  CKPALPPPPPPPRFIYTALSP--PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNRPA 130
                  PPPPPRF Y    P  PPPPRF Y TGVPG LY  DA++RW +FS  +  R  
Sbjct: 79  -------PPPPPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFS--SAGRDD 138

Query: 131 TAVLVVALGCGALNLM 141
             +L+++ G G L L+
Sbjct: 139 IGILLLSFGFGLLGLL 144

[Close]
BLAST of Cp4.1LG03g05700 vs. NCBI nr
Match: gi|566211035|ref|XP_006372591.1| (hypothetical protein POPTR_0017s03030g [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 63/143 (44.06%), Postives = 82/143 (57.34%), Query Frame = 1 

Query: 3   MAPSAAIPLSLSFLFL-FLHLADSQPFSPVD----PQDPNSEIKCGSCPCSNPCVKQFPP 62
           M P   + L LSFL    + ++ +     +D    PQ+P++ IKCGSCPC NPC +  PP
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 63  PPPPPPP------PNCKPALPPPPPPPRFIYTALSPPPPPRFIYTTG-VPGNLYQIDANN 122
           PPPPPPP      P C P  PPPPPPP   Y +   PPPPRF Y T  VPG++Y+ D  N
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPYCSPLAPPPPRFYYVTSTVPGSVYETDPYN 120

Query: 123 RWYYFSGTTRNRPATAVLVVALG 134
           RW  + G  +N     +L++ LG
Sbjct: 121 RWGLYDGARQNAVTWLLLLIGLG 143

[Close]
BLAST of Cp4.1LG03g05700 vs. NCBI nr
Match: gi|255584475|ref|XP_002532967.1| (PREDICTED: formin-like protein 3 [Ricinus communis])

HSP 1 Score: 93.2 bits (230), Expect = 4.0e-16
Identity = 56/110 (50.91%), Postives = 65/110 (59.09%), Query Frame = 1 

Query: 33  PQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPALPPPPPPPRFIYTALSPPPPPR 92
           PQ+P++ IKCGSCPC NPC  Q PPPPPPPPPP           PP+ +Y     PPPPR
Sbjct: 35  PQEPDAGIKCGSCPCVNPCA-QLPPPPPPPPPP-----------PPKTVYCTPLAPPPPR 94

Query: 93  FIYTTGVP--GNLYQIDANNRWYYFSGTTRNRPATAVLVVALGCGALNLM 141
           FIY TGVP  GNLY  D    W Y+S  T N    +  + A G G L+LM
Sbjct: 95  FIYVTGVPGNGNLYVTDPYENWDYYSDATHN--VVSWFLAAFGFGVLHLM 130

[Close]
BLAST of Cp4.1LG03g05700 vs. NCBI nr
Match: gi|823205294|ref|XP_012436745.1| (PREDICTED: uncharacterized protein LOC105763171 [Gossypium raimondii])

HSP 1 Score: 89.7 bits (221), Expect = 4.4e-15
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 1 

Query: 31  VDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPPPPNCKPALPPPPPPPRFIY--TALSPP 90
           V PQ P +EIKCG+CPC NPC +Q  PPPPPP                RF Y  T  SPP
Sbjct: 42  VVPQAPTTEIKCGACPCVNPCGQQSLPPPPPP----------------RFTYCNTLPSPP 101

Query: 91  PPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRN 122
           PPPRF Y TG+PG LY +D ++RW YFS   RN
Sbjct: 102 PPPRFYYVTGMPGQLYGVDPDDRWRYFSNGGRN 118

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g05700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g05700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7R0_CUCSA1.7e-4569.08Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1[more]
A0A061EG52_THECC8.7e-1847.79Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1[more]
U5FGW6_POPTR7.3e-1744.06Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1[more]
B9T3Z8_RICCO2.8e-1650.91Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1[more]
A0A0D2TXY8_GOSRA3.1e-1552.69Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1[more]
BLAST of Cp4.1LG03g05700 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03350.29.5e-0839.71 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT1G23040.13.6e-0751.56 hydroxyproline-rich glycoprotein family protein[more]
BLAST of Cp4.1LG03g05700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778680858|ref|XP_011651408.1|2.4e-4569.08PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus][more]
gi|590652126|ref|XP_007033069.1|1.2e-1747.79Uncharacterized protein TCM_019232 [Theobroma cacao][more]
gi|566211035|ref|XP_006372591.1|1.1e-1644.06hypothetical protein POPTR_0017s03030g [Populus trichocarpa][more]
gi|255584475|ref|XP_002532967.1|4.0e-1650.91PREDICTED: formin-like protein 3 [Ricinus communis][more]
gi|823205294|ref|XP_012436745.1|4.4e-1552.69PREDICTED: uncharacterized protein LOC105763171 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g05700.1Cp4.1LG03g05700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35094FAMILY NOT NAMEDcoord: 30..143
score: 1.3
NoneNo IPR availablePANTHERPTHR35094:SF2SUBFAMILY NOT NAMEDcoord: 30..143
score: 1.3