CsaV3_3G021620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G021620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3 : 18697920 .. 18698667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATGGCGCCTTACGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATCCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGGCCGGGCATGGCGGCAGTTGCGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGTAAGTGGTGAAGGATGAATAGCCATATAAAGCAAGTTAATGTGTTGAATTTGGTCTAATTACTAAAAGAAATATATTTACTCTTAGTTCATCATAAAGTATAAGTATATATATATATATTATATGATCTTAATTATTAGATGTCTATTTATTTACCTTTTATTTCAACAAAATTTATTTATATTTTCTTTCAATATAATTTTGGGGTTATATATATTTTTGGTGTTGATAGGAATATTGAAGGTTACAAATTATTTATTTGTGGTTGATATGTATTGTGACGTTGATGGATGCTTATAG

mRNA sequence

ATGAAAATGGCGCCTTACGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATCCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGGCCGGGCATGGCGGCAGTTGCGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGAATATTGAAGGTTACAAATTATTTATTTGTGGTTGATATGTATTGTGACGTTGATGGATGCTTATAG

Coding sequence (CDS)

ATGAAAATGGCGCCTTACGCCGCCATTTTACTCTCCTTTTCTTTCCTCTCCCACCTCCTTCTTCTCGCCAACTCCCAAACCTCCTCCCCGATATTGGTAGATCCTCAAAATCCGGACGCTGAGATCAAATGTGGATCATGCCCTTGTTCCAATCCATGTATTCAACAACTATCGCCACCACCGCCCCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTTGTACTCCAACGGTGTCCTCTCGACCACCACCTCCTAGGTTTATTTATACTACGTCATCACCTGCACCACCACCTCCAAGGTTTACTTATACGACGGGTGTTCCCGGTAATTTGTACGAGATTGATGCGAATAATAGTTGGTATTACTTCTCTGGCACGAGGAGGACGCGGCCGGGCATGGCGGCAGTTGCGGTGGCGATTGGCTGTGGAGCTTTGCATCTAATGGGGTTTAGAATATTGAAGGTTACAAATTATTTATTTGTGGTTGATATGTATTGTGACGTTGATGGATGCTTATAG

Protein sequence

MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPPPPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYFSGTRRTRPGMAAVAVAIGCGALHLMGFRILKVTNYLFVVDMYCDVDGCL

Homology

[Close]

BLAST of CsaV3_3G021620 vs. NCBI nr
Match: XP_011651408.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN57843.1 hypothetical protein Csa_3G346900 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 5.9e-47
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120
           XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGF 150
           YFSGTRRTRPGMAAVAVAIGCGALHLMGF
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGF 149

[Close]

BLAST of CsaV3_3G021620 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 5.6e-21
Identity = 103/149 (69.13%), Postives = 113/149 (75.84%), Query Frame = 0


Query: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKMAP AAI LS S     L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q  XX
Sbjct: 1   MKMAPSAAIPLSLSXXXXXLHLADSQPFSP--VDPQDPNSEIKCGSCPCSNPCVKQFPXX 60

Query: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120
           XXXXXXX           XXXXXXXXXXXXXXXXXXXXXXXXXXXX  NLY+IDANN WY
Sbjct: 61  XXXXXXXN-----CKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWY 120

Query: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGF 150
           YFSGT R RP  A + VA+GCGAL+LM F
Sbjct: 121 YFSGTTRNRPATAVLVVALGCGALNLMAF 142

[Close]

BLAST of CsaV3_3G021620 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 108.2 bits (269), Expect = 2.8e-20
Identity = 102/147 (69.39%), Postives = 111/147 (75.51%), Query Frame = 0


Query: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXXXX 62
           MAP AAI LS SFL   L LANSQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q      
Sbjct: 1   MAPSAAIPLSLSFLFXXLHLANSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF----- 60

Query: 63  XXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYYF 122
             XXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXX  NLY+IDANN WYYF
Sbjct: 61  -PXXXXXXXXXCKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYF 120

Query: 123 SGTRRTRPGMAAVAVAIGCGALHLMGF 150
           SGT R     AA+ VA+GCGAL+LM F
Sbjct: 121 SGTTRNWSATAALVVALGCGALNLMAF 139

[Close]

BLAST of CsaV3_3G021620 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 66/149 (44.30%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGS-CPCSNPCIQQLSXXX 62
           MAP AAI LS       LLL+  QTS PI   P +PDAEI CGS  PCSNP ++QL    
Sbjct: 1   MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDAEINCGSTTPCSNPSVRQLQPSP 60

Query: 63  XXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYY 122
            XXXXXXXXXX   T+                               +LY+ D  N WYY
Sbjct: 61  PXXXXXXXXXXFVYTMG---------------------------VPSDLYQNDEKNRWYY 115

Query: 123 FSGTRRTRPGMAA-VAVAIGCGALHLMGF 150
           FSG     P MAA V V + CGAL LM F
Sbjct: 121 FSGAVGKPPAMAALVVVGLACGALDLMVF 115

[Close]

BLAST of CsaV3_3G021620 vs. NCBI nr
Match: XP_022949046.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 67.0 bits (162), Expect = 7.1e-08
Identity = 76/149 (51.01%), Postives = 83/149 (55.70%), Query Frame = 0


Query: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCP-CSNPCIQQLSXXX 62
           MAP AAI LS       LLL+  QTS PI   P +PD EI C S   CSNP +QQL    
Sbjct: 1   MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTLCSNPSVQQLQPSP 60

Query: 63  XXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYY 122
           XXXXXXXXXXX T T                XXXXXXXXXXX     +LY+ D  N WYY
Sbjct: 61  XXXXXXXXXXXXTYTT-------------LSXXXXXXXXXXXTGVPSDLYQNDEKNRWYY 120

Query: 123 FSGTRRTRPGMAA-VAVAIGCGALHLMGF 150
           FSG     P MAA V V + CGAL L+ F
Sbjct: 121 FSGAVGKPPAMAALVVVGLACGALDLIVF 129

[Close]

BLAST of CsaV3_3G021620 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.9e-47
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60
           MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX
Sbjct: 1   MKMAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSXX 60

Query: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120
           XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY
Sbjct: 61  XXXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWY 120

Query: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGF 150
           YFSGTRRTRPGMAAVAVAIGCGALHLMGF
Sbjct: 121 YFSGTRRTRPGMAAVAVAIGCGALHLMGF 149

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651408.1	5.9e-47	100.00	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN578...	[more]
XP_023528316.1	5.6e-21	69.13	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022984145.1	2.8e-20	69.39	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023525793.1	1.3e-09	44.30	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]
XP_022949046.1	7.1e-08	51.01	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of CsaV3_3G021620 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G021620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	3.9e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G021620.1	CsaV3_3G021620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..98
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 27..146
None	No IPR available	PANTHER	PTHR35094:SF2	SUBFAMILY NOT NAMED	coord: 27..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G021620	CSPI03G21850	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G021620	Cucsa.012670	Cucumber (Gy14) v1	cgycucB303
CsaV3_3G021620	CmaCh14G008520	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G021620	CmoCh14G008660	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G021620	Cp4.1LG03g05700	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G021620	Carg07444	Silver-seed gourd	carcucB0801
CsaV3_3G021620	Cla013170	Watermelon (97103) v1	cucwmB254
CsaV3_3G021620	MELO3C020289	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G021620	ClCG05G010960	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G021620	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G021620	MELO3C020289.2	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G021620	Cla97C05G093250	Watermelon (97103) v2	cucwmbB220
CsaV3_3G021620	Bhi01G001348	Wax gourd	cucwgoB296

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G021620	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G021620	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G021620	Cucurbita pepo (Zucchini)	cpecucB0686
CsaV3_3G021620	Cucumber (Gy14) v2	cgybcucB117