Bhi01G001348 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi01G001348
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Unknown protein
Location	chr1 : 38662524 .. 38664135 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGTTGTAGGCTAAAAATTCATATATAATAGAAGTAAAAATACAAAGAAATAAATAAAAAGTGCAAAAAGACCAAAAAGCCCTTCCCTTTCCCACTATTCCCATGCACCTAACATAAGCAAATAACAGCCCAACACTCACCTTCACATTAATTCCTTCTCTCTCTCTCTCTTCAAAGCTCAATCCTCATAGATTTCAGAGCTCCCTCCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTCCTCTCTCTTCCTTTCTTCTGCCTCCTCATTCTTCTCGCCGATGCCCAAACCTCCGCCCCGATACCGGTAGATCCGCAAAATCCCGACGCTGAAATAAAATGTGGATCATGCCCTTGTTCTAACCCATGTGGTGGCGCTTGGCTGTGGAGCTTTGGATCTTATGGGGGTTTGGTAAGTGGTGAAGGATGAATAGAATATAAAGCAACTTAACGATGTGTTAAATTTGGTCTAATTATTAAAAGAATTACTCTCTCCAAAGTATAAATATATATATATATATATAAGATCTTAGATGTCTATCTATTTACCTTTTTTTCAACAAAATTAATTTAGTATTCTGTCAATATATTTTTATAGTTAAATTTTGGTGTTGATAGGAACATTGAAGAATACAAATTTATGGTGAGATATATATTGATGTTGATGGATGTTTTTAGAGACAGTAATATATACGAAGACTTGTAAAGATAGAACAAAATTTAAAGGGATTTGTAGAAGAGTGTTGGGACAAGATGGTAGGCTTTATTAAAGTTACTTTTTTTAAAAAAAAAAAAAGTATTTTAATAAAAAAATACATAGACAAGTTTAGATAATTTTTTTTTTGGTCATTAAAAAAGTGGATTGTTTTCTCACATTTTTTATAAGTTCATCATCTTTCTTAAACATATATTCGAATTCTAGGCCAAAATTCAAAAATCAGAAACTGAAGAGATAAAATAGTTATCGAATAAAGCTTTAATATATATATATATATATAATTTTTTTTTATTGAAGTTACTTTTATTTAAGTATGTTATTAAGAATTACATGGGGAAATTTTGATAACTATATTATTCTTTTTTCTTCAAAAAATTATGATTGTTTTCTGACATTTTTTATAACTTTTTCATCTTTCTTAAAATCACATTCGAATTCTAAGCCAAAGTTCAAAAACGAAATGTCAGAATATAAAAGTGAATAATAGAGAAACAAAGTTATAGGTGGAAGTAAAATCTATCACATTAATTTAATTTTTGAAAATGAAAAAATGGTTATTAAATACGGACTTAATATTATATTTTAGTTTTAATATCATAGAAATGTTTTCTCTATCTGGTTGTATAGATTTTTTCGTGTACTACTTTTCAATAAATATTTTTAGACATTAGAGAGGTTGGCAAAAGAATTGTGTATAAGTGAACACTAAAAAAGAAGAGAAAGTAGGGTATGAAAAATGTGATTAATGAGAGAAAAAGATGTGTATGAAGAGGAAGATTACTGAGGGATTATACACAATACATATGAAGTGAGAGAGTATATAATTAAAGTTTGAGAATATAGAAAGATTTAATTAAAGTTTGAGAACATAGAAAGATTAGTGAGAAAAAAT

mRNA sequence

TAAAGTTGTAGGCTAAAAATTCATATATAATAGAAGTAAAAATACAAAGAAATAAATAAAAAGTGCAAAAAGACCAAAAAGCCCTTCCCTTTCCCACTATTCCCATGCACCTAACATAAGCAAATAACAGCCCAACACTCACCTTCACATTAATTCCTTCTCTCTCTCTCTCTTCAAAGCTCAATCCTCATAGATTTCAGAGCTCCCTCCTACCTGAAAATGGCGCCTTCCGCCGCCATTTTCCTCTCTCTTCCTTTCTTCTGCCTCCTCATTCTTCTCGCCGATGCCCAAACCTCCGCCCCGATACCGGTAGATCCGCAAAATCCCGACGCTGAAATAAAATGTGGATCATGCCCTTGTTCTAACCCATGTGGTGGCGCTTGGCTGTGGAGCTTTGGATCTTATGGGGGTTTGGTAAGTGGTGAAGGATGAATAGAATATAAAGCAACTTAACGATGTGTTAAATTTGGTCTAATTATTAAAAGAATTACTCTCTCCAAAGTATAAATATATATATATATATATAAGATCTTAGATGTCTATCTATTTACCTTTTTTTCAACAAAATTAATTTAGTATTCTGTCAATATATTTTTATAGTTAAATTTTGGTGTTGATAGGAACATTGAAGAATACAAATTTATGGTGAGATATATATTGATGTTGATGGATGTTTTTAGAGACAGTAATATATACGAAGACTTGTAAAGATAGAACAAAATTTAAAGGGATTTGTAGAAGAGTGTTGGGACAAGATGGTAGGCTTTATTAAAGTTACTTTTTTTAAAAAAAAAAAAAGTATTTTAATAAAAAAATACATAGACAAGTTTAGATAATTTTTTTTTTGGTCATTAAAAAAGTGGATTGTTTTCTCACATTTTTTATAAGTTCATCATCTTTCTTAAACATATATTCGAATTCTAGGCCAAAATTCAAAAATCAGAAACTGAAGAGATAAAATAGTTATCGAATAAAGCTTTAATATATATATATATATATAATTTTTTTTTATTGAAGTTACTTTTATTTAAGTATGTTATTAAGAATTACATGGGGAAATTTTGATAACTATATTATTCTTTTTTCTTCAAAAAATTATGATTGTTTTCTGACATTTTTTATAACTTTTTCATCTTTCTTAAAATCACATTCGAATTCTAAGCCAAAGTTCAAAAACGAAATGTCAGAATATAAAAGTGAATAATAGAGAAACAAAGTTATAGGTGGAAGTAAAATCTATCACATTAATTTAATTTTTGAAAATGAAAAAATGGTTATTAAATACGGACTTAATATTATATTTTAGTTTTAATATCATAGAAATGTTTTCTCTATCTGGTTGTATAGATTTTTTCGTGTACTACTTTTCAATAAATATTTTTAGACATTAGAGAGGTTGGCAAAAGAATTGTGTATAAGTGAACACTAAAAAAGAAGAGAAAGTAGGGTATGAAAAATGTGATTAATGAGAGAAAAAGATGTGTATGAAGAGGAAGATTACTGAGGGATTATACACAATACATATGAAGTGAGAGAGTATATAATTAAAGTTTGAGAATATAGAAAGATTTAATTAAAGTTTGAGAACATAGAAAGATTAGTGAGAAAAAAT

Coding sequence (CDS)

ATGGCGCCTTCCGCCGCCATTTTCCTCTCTCTTCCTTTCTTCTGCCTCCTCATTCTTCTCGCCGATGCCCAAACCTCCGCCCCGATACCGGTAGATCCGCAAAATCCCGACGCTGAAATAAAATGTGGATCATGCCCTTGTTCTAACCCATGTGGTGGCGCTTGGCTGTGGAGCTTTGGATCTTATGGGGGTTTGGTAAGTGGTGAAGGATGA

Protein sequence

MAPSAAIFLSLPFFCLLILLADAQTSAPIPVDPQNPDAEIKCGSCPCSNPCGGAWLWSFGSYGGLVSGEG

Homology

[Close]

BLAST of Bhi01G001348 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-13
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MAPSAAIFLSLPFFCLLILLADAQTSAPIPVDPQNPDAEIKCGSCPCSNPC 52
          MAP AAI LS  F   L+LLA++QTS+PI VDPQNPDAEIKCGSCPCSNPC
Sbjct: 3  MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPC 53

[Close]

BLAST of Bhi01G001348 vs. NCBI nr
Match: XP_011651408.1 (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN57843.1 hypothetical protein Csa_3G346900 [Cucumis sativus])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MAPSAAIFLSLPFFCLLILLADAQTSAPIPVDPQNPDAEIKCGSCPCSNPC 52
          MAP AAI LS  F   L+LLA++QTS+PI VDPQNPDAEIKCGSCPCSNPC
Sbjct: 3  MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPC 53

[Close]

BLAST of Bhi01G001348 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 1  MAPSAAIFLSLPFFCLLILLADAQTSAPIPVDPQNPDAEIKCGSCPCSNPC 52
          MAPSAAI LSL F    + LA++Q  +  PVDPQ+P++EIKCGSCPCSNPC
Sbjct: 1  MAPSAAIPLSLSFLFXXLHLANSQPVS--PVDPQDPNSEIKCGSCPCSNPC 49

[Close]

BLAST of Bhi01G001348 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 3.2e-07
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 1  MAPSAAIFLSLPFFCLLILLADAQTSAPIPVDPQNPDAEIKCGSCPCSNPC 52
          MAPSAAI LSL      + LAD+Q  +  PVDPQ+P++EIKCGSCPCSNPC
Sbjct: 3  MAPSAAIPLSLSXXXXXLHLADSQPFS--PVDPQDPNSEIKCGSCPCSNPC 51

[Close]

BLAST of Bhi01G001348 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-04
Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 1  MAPSAAIFLSLPFFCLLILLADAQTSAPIPVDPQNPDAEIKCGS-CPCSNP 51
          MAPSAAIFLSL       LL+  QTS PI   P +PDAEI CGS  PCSNP
Sbjct: 1  MAPSAAIFLSL-------LLSFIQTSPPISASPLDPDAEINCGSTTPCSNP 44

The following BLAST results are available for this feature:

BLAST of Bhi01G001348 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi01G001348 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi01G001348 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	9.8e-13	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]

BLAST of Bhi01G001348 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651408.1	1.5e-12	76.47	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus] >KGN578...	[more]
XP_022984145.1	1.9e-07	64.71	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023528316.1	3.2e-07	64.71	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_023525793.1	4.3e-04	62.75	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi01M001348	Bhi01M001348	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi01G001348	Csa3G346900	Cucumber (Chinese Long) v2	cuwgoB299
Bhi01G001348	ClCG05G010960	Watermelon (Charleston Gray)	wcgwgoB427
Bhi01G001348	CSPI03G21850	Wild cucumber (PI 183967)	cpiwgoB299
Bhi01G001348	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	lsiwgoB431
Bhi01G001348	CsaV3_3G021620	Cucumber (Chinese Long) v3	cucwgoB296
Bhi01G001348	Cla013170	Watermelon (97103) v1	wgowmB202
Bhi01G001348	Cla97C05G093250	Watermelon (97103) v2	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi01G001348	Cucurbita pepo (Zucchini)	cpewgoB0681
Bhi01G001348	Cucurbita pepo (Zucchini)	cpewgoB0786
Bhi01G001348	Melon (DHL92) v3.6.1	medwgoB531
Bhi01G001348	Melon (DHL92) v3.5.1	mewgoB530
Bhi01G001348	Silver-seed gourd	carwgoB0227
Bhi01G001348	Silver-seed gourd	carwgoB0895
Bhi01G001348	Cucumber (Gy14) v1	cgywgoB393
Bhi01G001348	Cucumber (Gy14) v2	cgybwgoB281
Bhi01G001348	Cucurbita maxima (Rimu)	cmawgoB0333
Bhi01G001348	Cucurbita maxima (Rimu)	cmawgoB0559
Bhi01G001348	Cucurbita moschata (Rifu)	cmowgoB0556
Bhi01G001348	Cucurbita moschata (Rifu)	cmowgoB0322