Carg07444 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg07444
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_019 : 867527 .. 867925 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCCGCCGCCATTTTTCTCTCTCTTCTCCTTTCCTTCATACAAACCTCTCCGCCGATATCGGCCAGTCCGCTCGATCCCGACACGGAGATAAATTGTGACTCAACAACCCCCTGTTCCAACCCATTTGTTCAGCAATTGCAGCCATCGCCACCGCTACCACCACCACCGTTTCCACCTCCGAGGTTTACTTATTCGACTTTGTCGTCTCCACCACCGCCTCCGAGGTTTATTTACACAACGGGCGTTCCCAGTGACCTATACCAGAATGATGAAAAGAACCGTTGGTATTACTTCTCCGGCGCGGTCGGGAAGCCGCCAGCCATGGCGGCGCTGGTGGTGGTGGGCCTTGCCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAATGGTAA

mRNA sequence

ATGGCGCCTTCCGCCGCCATTTTTCTCTCTCTTCTCCTTTCCTTCATACAAACCTCTCCGCCGATATCGGCCAGTCCGCTCGATCCCGACACGGAGATAAATTGTGACTCAACAACCCCCTGTTCCAACCCATTTGTTCAGCAATTGCAGCCATCGCCACCGCTACCACCACCACCGTTTCCACCTCCGAGGTTTACTTATTCGACTTTGTCGTCTCCACCACCGCCTCCGAGGTTTATTTACACAACGGGCGTTCCCAGTGACCTATACCAGAATGATGAAAAGAACCGTTGGTATTACTTCTCCGGCGCGGTCGGGAAGCCGCCAGCCATGGCGGCGCTGGTGGTGGTGGGCCTTGCCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAATGGTAA

Coding sequence (CDS)

ATGGCGCCTTCCGCCGCCATTTTTCTCTCTCTTCTCCTTTCCTTCATACAAACCTCTCCGCCGATATCGGCCAGTCCGCTCGATCCCGACACGGAGATAAATTGTGACTCAACAACCCCCTGTTCCAACCCATTTGTTCAGCAATTGCAGCCATCGCCACCGCTACCACCACCACCGTTTCCACCTCCGAGGTTTACTTATTCGACTTTGTCGTCTCCACCACCGCCTCCGAGGTTTATTTACACAACGGGCGTTCCCAGTGACCTATACCAGAATGATGAAAAGAACCGTTGGTATTACTTCTCCGGCGCGGTCGGGAAGCCGCCAGCCATGGCGGCGCTGGTGGTGGTGGGCCTTGCCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAATGGTAA

Protein sequence

MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPLPPPPFPPPRFTYSTLSSPPPPPRFIYTTGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLACGALDLMVFGKW

Homology

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BLAST of Carg07444 vs. NCBI nr
Match: XP_022949046.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 1.2e-47
Identity = 125/132 (94.70%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPXXXXXX 60
           MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTT CSNP VQQLQPSP XXXXXX
Sbjct: 1   MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTLCSNPSVQQLQPSPXXXXXXX 60

Query: 61  XXXXXXYSTLSXXXXXXXXXXXXGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLA 120
           XXXXX Y+TLSXXXXXXXXXXX GVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLA
Sbjct: 61  XXXXXTYTTLSXXXXXXXXXXXTGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLA 120

Query: 121 CGALDLMVFGKW 133
           CGALDL+VFGKW
Sbjct: 121 CGALDLIVFGKW 132

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BLAST of Carg07444 vs. NCBI nr
Match: XP_023525793.1 (uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 4.3e-45
Identity = 110/132 (83.33%), Postives = 112/132 (84.85%), Query Frame = 0


Query: 1   MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPXXXXXX 60
           MAPSAAIFLSLLLSFIQTSPPISASPLDPD EINC STTPCSNP V+QLQPSPPXXXXXX
Sbjct: 1   MAPSAAIFLSLLLSFIQTSPPISASPLDPDAEINCGSTTPCSNPSVRQLQPSPPXXXXXX 60

Query: 61  XXXXXXYSTLSXXXXXXXXXXXXGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLA 120
           XXXX  Y+               GVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLA
Sbjct: 61  XXXXFVYT--------------MGVPSDLYQNDEKNRWYYFSGAVGKPPAMAALVVVGLA 118

Query: 121 CGALDLMVFGKW 133
           CGALDLMVFGKW
Sbjct: 121 CGALDLMVFGKW 118

[Close]

BLAST of Carg07444 vs. NCBI nr
Match: XP_022998633.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])

HSP 1 Score: 123.2 bits (308), Expect = 6.4e-25
Identity = 89/99 (89.90%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 1   MAPSAAIFLSLLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSPPXXXXXX 60
           MAPSAAIFLSLLLSFIQ SPPI ASPLDP  EINC STTPCSNP VQQLQPSP XXXXXX
Sbjct: 1   MAPSAAIFLSLLLSFIQASPPILASPLDPSAEINCGSTTPCSNPSVQQLQPSPXXXXXXX 60

Query: 61  XXXXXXYSTLSXXXXXXXXXXXXGVPSDLYQNDEKNRWY 100
           XXXXXXY+T  XXXXXXXXXXXXGVPSDLYQNDEKNRWY
Sbjct: 61  XXXXXXYTTXXXXXXXXXXXXXXGVPSDLYQNDEKNRWY 99

[Close]

BLAST of Carg07444 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 80/144 (55.56%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 1   MAPSAAIFLSLLLSF----IQTSPPIS-ASPLDPDTEINCDSTTPCSNPFVQQLQPSP-- 60
           MAPSAAI LSL   F    +  S P+S   P DP++EI C S  PCSNP V+Q       
Sbjct: 1   MAPSAAIPLSLSFLFXXLHLANSQPVSPVDPQDPNSEIKCGS-CPCSNPCVKQFPXXXXX 60

Query: 61  -----PXXXXXXXXXXXXYSTLSXXXXXXXXXXXXGVPSDLYQNDEKNRWYYFSGAVGKP 120
                   XXXXXXXXXX     XXXXXXXXXXXX  P +LYQ D  NRWYYFSG     
Sbjct: 61  XXXXCKPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTRNW 120

Query: 121 PAMAALVVVGLACGALDLMVFGKW 133
            A AAL VV L CGAL+LM FGKW
Sbjct: 121 SATAAL-VVALGCGALNLMAFGKW 142

[Close]

BLAST of Carg07444 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-10
Identity = 80/145 (55.17%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 1   MAPSAAIFLSL-----LLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQL------ 60
           MAPSAAI LSL      L    + P     P DP++EI C S  PCSNP V+Q       
Sbjct: 3   MAPSAAIPLSLSXXXXXLHLADSQPFSPVDPQDPNSEIKCGS-CPCSNPCVKQFPXXXXX 62

Query: 61  --QPSPPXXXXXXXXXXXXYSTLSXXXXXXXXXXXXGVPSDLYQNDEKNRWYYFSGAVGK 120
               +  XXXXXXXXXXXX     XXXXXXXXXXXX  P +LYQ D  NRWYYFSG    
Sbjct: 63  XXXXNCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGNLYQIDANNRWYYFSGTTRN 122

Query: 121 PPAMAALVVVGLACGALDLMVFGKW 133
            PA A L VV L CGAL+LM FGKW
Sbjct: 123 RPATAVL-VVALGCGALNLMAFGKW 145

[Close]

BLAST of Carg07444 vs. TrEMBL
Match: tr|A0A0A0L7R0|A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 78/152 (51.32%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 1   MAPSAAIFLS-------LLLSFIQTSPPISASPLDPDTEINCDSTTPCSNPFVQQLQPSP 60
           MAP AAI LS       LLL+  QTS PI   P +PD EI C S  PCSNP +QQL    
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGS-CPCSNPCIQQLSXXX 62

Query: 61  PXXXXXXXXXXXXYST-------------LSXXXXXXXXXXXXGVPSDLYQNDEKNRWYY 120
            XXXXXXXXXX   +                XXXXXXXXXXXX    +LY+ D  N WYY
Sbjct: 63  XXXXXXXXXXXCTXTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYEIDANNSWYY 122

Query: 121 FSGAVGKPPAMAALVVVGLACGALDLMVFGKW 133
           FSG     P MAA V V + CGAL LM F KW
Sbjct: 123 FSGTRRTRPGMAA-VAVAIGCGALHLMGFSKW 152

The following BLAST results are available for this feature:

BLAST of Carg07444 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949046.1	1.2e-47	94.70	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]
XP_023525793.1	4.3e-45	83.33	uncharacterized protein LOC111789303 [Cucurbita pepo subsp. pepo]	[more]
XP_022998633.1	6.4e-25	89.90	leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]	[more]
XP_022984145.1	2.0e-10	55.56	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023528316.1	3.4e-10	55.17	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg07444 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg07444 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg07444 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L7R0\|A0A0A0L7R0_CUCSA	1.9e-09	51.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg07444-RA	Carg07444-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..74
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 25..128

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg07444	Cla013170	Watermelon (97103) v1	carwmB0760
Carg07444	Csa3G346900	Cucumber (Chinese Long) v2	carcuB0780
Carg07444	MELO3C020289	Melon (DHL92) v3.5.1	carmeB0756
Carg07444	ClCG05G010960	Watermelon (Charleston Gray)	carwcgB0739
Carg07444	CSPI03G21850	Wild cucumber (PI 183967)	carcpiB0798
Carg07444	Cucsa.012670	Cucumber (Gy14) v1	carcgyB0859
Carg07444	CmaCh14G008520	Cucurbita maxima (Rimu)	carcmaB1057
Carg07444	CmoCh14G008660	Cucurbita moschata (Rifu)	carcmoB1031
Carg07444	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	carlsiB700
Carg07444	Cp4.1LG03g05700	Cucurbita pepo (Zucchini)	carcpeB1073
Carg07444	MELO3C020289.2	Melon (DHL92) v3.6.1	carmedB0771
Carg07444	CsaV3_3G021620	Cucumber (Chinese Long) v3	carcucB0801
Carg07444	Cla97C05G093250	Watermelon (97103) v2	carwmbB0795

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg07444	Carg24226	Silver-seed gourd	carcarB213

The following block(s) are covering this gene:


Gene	Organism	Block
Carg07444	Wax gourd	carwgoB0895
Carg07444	Cucumber (Gy14) v2	carcgybB0757
Carg07444	Cucurbita maxima (Rimu)	carcmaB1059
Carg07444	Cucurbita moschata (Rifu)	carcmoB1033
Carg07444	Cucurbita pepo (Zucchini)	carcpeB1072