CmoCh14G008660 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G008660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Nutrient reservoir, putative
Location	Cmo_Chr14 : 4577565 .. 4577996 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTTGCCGGTCGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCACTGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCCCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

mRNA sequence

ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTTGCCGGTCGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCACTGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCCCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

Coding sequence (CDS)

ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTTGCCGGTCGATCCGCAAGATCCCAATTCCGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCACTGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCCCCCAGGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTCTCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA

Homology

[Close]

BLAST of CmoCh14G008660 vs. TrEMBL
Match: A0A0A0L7R0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 101/150 (67.33%), Postives = 114/150 (76.00%), Query Frame = 1


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQFPPPPP 60
           MAP AAI LS SFL   L LA+SQ   P  VDPQ+P++EIKCGSCPCSNPC++Q  PPPP
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61  LPPPPN----CKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTGVPGNLYQIDANNRWYYF 120
            PPPP     C P +   PPPPRFIYT+ SP PPPPRF YTTGVPGNLY+IDANN WYYF
Sbjct: 63  PPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYF 122

Query: 121 SGTTRNQPATAALVVALGCGALNLMAFGKW 144
           SGT R +P  AA+ VA+GCGAL+LM F KW
Sbjct: 123 SGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of CmoCh14G008660 vs. TrEMBL
Match: A0A061EG52_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.8e-18
Identity = 65/134 (48.51%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 9   LSLSFLF-LFLHLADSQPVLPVD-PQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCK 68
           LS+SFL  +       + ++PV  PQ P +EIKCG+CPC NPC +Q  PPPP PPPP+  
Sbjct: 21  LSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPP-PPPPS-- 80

Query: 69  PALPPPPPPPRFIYTSLSP--PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATA 128
                PPPPPRF Y +  P  PPPPRF Y TGVPG LY  DA++RW +FS   R+     
Sbjct: 81  -----PPPPPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFSSAGRDD--IG 140

Query: 129 ALVVALGCGALNLM 139
            L+++ G G L L+
Sbjct: 141 ILLLSFGFGLLGLL 144

[Close]

BLAST of CmoCh14G008660 vs. TrEMBL
Match: U5FGW6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.5e-17
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 1


Query: 1   MAPSAAIPLSLSFLFL-FLHLADSQPVLPVD----PQDPNSEIKCGSCPCSNPCVKQFPP 60
           M P   + L LSFL    + ++ +     +D    PQ+P++ IKCGSCPC NPC +  PP
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 61  PPPLPPP------PNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTG-VPGNLYQIDANN 120
           PPP PPP      P C P  PPPPPPP   Y S   PPPPRF Y T  VPG++Y+ D  N
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPYCSPLAPPPPRFYYVTSTVPGSVYETDPYN 120

Query: 121 RWYYFSGTTRNQPATAALVVALG 132
           RW  + G  +N      L++ LG
Sbjct: 121 RWGLYDGARQNAVTWLLLLIGLG 143

[Close]

BLAST of CmoCh14G008660 vs. TrEMBL
Match: B9T3Z8_RICCO (Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-16
Identity = 64/141 (45.39%), Postives = 76/141 (53.90%), Query Frame = 1


Query: 11  LSFLFLFLHLADS-----------QPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPL 70
           L FLFL      S           Q ++P  PQ+P++ IKCGSCPC NPC  Q PPPPP 
Sbjct: 5   LFFLFLIFFAVPSCAATSVTKKLDQTLVP-QPQEPDAGIKCGSCPCVNPCA-QLPPPPP- 64

Query: 71  PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVP--GNLYQIDANNRWYYFSGTT 130
                     PPPPPPP+ +Y +   PPPPRFIY TGVP  GNLY  D    W Y+S  T
Sbjct: 65  ----------PPPPPPPKTVYCTPLAPPPPRFIYVTGVPGNGNLYVTDPYENWDYYSDAT 124

Query: 131 RNQPATAALVVALGCGALNLM 139
            N    +  + A G G L+LM
Sbjct: 125 HN--VVSWFLAAFGFGVLHLM 130

[Close]

BLAST of CmoCh14G008660 vs. TrEMBL
Match: A0A0D2TXY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-15
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 6   AIPLSLSFLFLFLHLADSQPVLPVD-PQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPN 65
           A+P++ S   L       + V+PV  PQ P +EIKCG+CPC NPC +Q  PPPP      
Sbjct: 25  AVPINASTKIL-------EEVVPVVVPQAPTTEIKCGACPCVNPCGQQSLPPPP------ 84

Query: 66  CKPALPPPPPPPRFIY--TSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRN 120
                     PPRF Y  T  SPPPPPRF Y TG+PG LY +D ++RW YFS   RN
Sbjct: 85  ----------PPRFTYCNTLPSPPPPPRFYYVTGMPGQLYGVDPDDRWRYFSNGGRN 118

[Close]

BLAST of CmoCh14G008660 vs. TAIR10
Match: AT1G23040.1 (AT1G23040.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1


Query: 45  CSNPCVKQFPPP---PPLPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL 104
           CS  C++  PPP   PP PPPP C P    PPPPP+ + +   PPPP  F+Y TG PGNL
Sbjct: 51  CSPSCIQNPPPPSPPPPSPPPPACPPPPALPPPPPKKVSSYCPPPPPANFLYITGPPGNL 110

Query: 105 YQID 106
           Y +D
Sbjct: 111 YPVD 114

[Close]

BLAST of CmoCh14G008660 vs. TAIR10
Match: AT3G03350.2 (AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-08
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1


Query: 69  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVV 128
           L PPPP   +   S S PPPP+++Y TGVPG LY+ + +++W Y S   RN      ++V
Sbjct: 28  LRPPPPRKTYCSKSSSSPPPPKYMYVTGVPGELYRTEPDDQWGYNSSVNRNLVKCLLVIV 87

Query: 129 ALGCGALN 137
            +G G +N
Sbjct: 88  IVGFGVIN 95

[Close]

BLAST of CmoCh14G008660 vs. NCBI nr
Match: gi|778680858|ref|XP_011651408.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-43
Identity = 101/150 (67.33%), Postives = 114/150 (76.00%), Query Frame = 1


Query: 1   MAPSAAIPLSLSFLFLFLHLADSQPVLP--VDPQDPNSEIKCGSCPCSNPCVKQFPPPPP 60
           MAP AAI LS SFL   L LA+SQ   P  VDPQ+P++EIKCGSCPCSNPC++Q  PPPP
Sbjct: 3   MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61  LPPPPN----CKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTGVPGNLYQIDANNRWYYF 120
            PPPP     C P +   PPPPRFIYT+ SP PPPPRF YTTGVPGNLY+IDANN WYYF
Sbjct: 63  PPPPPPPPSPCTPTVSSRPPPPRFIYTTSSPAPPPPRFTYTTGVPGNLYEIDANNSWYYF 122

Query: 121 SGTTRNQPATAALVVALGCGALNLMAFGKW 144
           SGT R +P  AA+ VA+GCGAL+LM F KW
Sbjct: 123 SGTRRTRPGMAAVAVAIGCGALHLMGFSKW 152

[Close]

BLAST of CmoCh14G008660 vs. NCBI nr
Match: gi|590652126|ref|XP_007033069.1| (Uncharacterized protein TCM_019232 [Theobroma cacao])

HSP 1 Score: 99.4 bits (246), Expect = 5.5e-18
Identity = 65/134 (48.51%), Postives = 83/134 (61.94%), Query Frame = 1


Query: 9   LSLSFLF-LFLHLADSQPVLPVD-PQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPNCK 68
           LS+SFL  +       + ++PV  PQ P +EIKCG+CPC NPC +Q  PPPP PPPP+  
Sbjct: 21  LSISFLIPIIASTKKLEEIVPVVVPQAPTTEIKCGTCPCVNPCGQQSLPPPP-PPPPS-- 80

Query: 69  PALPPPPPPPRFIYTSLSP--PPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATA 128
                PPPPPRF Y +  P  PPPPRF Y TGVPG LY  DA++RW +FS   R+     
Sbjct: 81  -----PPPPPRFTYCNPVPMTPPPPRFYYVTGVPGQLYTADADDRWTFFSSAGRDD--IG 140

Query: 129 ALVVALGCGALNLM 139
            L+++ G G L L+
Sbjct: 141 ILLLSFGFGLLGLL 144

[Close]

BLAST of CmoCh14G008660 vs. NCBI nr
Match: gi|566211035|ref|XP_006372591.1| (hypothetical protein POPTR_0017s03030g [Populus trichocarpa])

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 63/143 (44.06%), Postives = 80/143 (55.94%), Query Frame = 1


Query: 1   MAPSAAIPLSLSFLFL-FLHLADSQPVLPVD----PQDPNSEIKCGSCPCSNPCVKQFPP 60
           M P   + L LSFL    + ++ +     +D    PQ+P++ IKCGSCPC NPC +  PP
Sbjct: 1   MGPHQLLFLLLSFLLCTIIPISRASVAKKLDQTLVPQEPDAGIKCGSCPCVNPCGQLPPP 60

Query: 61  PPPLPPP------PNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTG-VPGNLYQIDANN 120
           PPP PPP      P C P  PPPPPPP   Y S   PPPPRF Y T  VPG++Y+ D  N
Sbjct: 61  PPPPPPPPPPPPTPYCTPLAPPPPPPPPTPYCSPLAPPPPRFYYVTSTVPGSVYETDPYN 120

Query: 121 RWYYFSGTTRNQPATAALVVALG 132
           RW  + G  +N      L++ LG
Sbjct: 121 RWGLYDGARQNAVTWLLLLIGLG 143

[Close]

BLAST of CmoCh14G008660 vs. NCBI nr
Match: gi|255584475|ref|XP_002532967.1| (PREDICTED: formin-like protein 3 [Ricinus communis])

HSP 1 Score: 93.2 bits (230), Expect = 3.9e-16
Identity = 64/141 (45.39%), Postives = 76/141 (53.90%), Query Frame = 1


Query: 11  LSFLFLFLHLADS-----------QPVLPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPL 70
           L FLFL      S           Q ++P  PQ+P++ IKCGSCPC NPC  Q PPPPP 
Sbjct: 5   LFFLFLIFFAVPSCAATSVTKKLDQTLVP-QPQEPDAGIKCGSCPCVNPCA-QLPPPPP- 64

Query: 71  PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVP--GNLYQIDANNRWYYFSGTT 130
                     PPPPPPP+ +Y +   PPPPRFIY TGVP  GNLY  D    W Y+S  T
Sbjct: 65  ----------PPPPPPPKTVYCTPLAPPPPRFIYVTGVPGNGNLYVTDPYENWDYYSDAT 124

Query: 131 RNQPATAALVVALGCGALNLM 139
            N    +  + A G G L+LM
Sbjct: 125 HN--VVSWFLAAFGFGVLHLM 130

[Close]

BLAST of CmoCh14G008660 vs. NCBI nr
Match: gi|823205294|ref|XP_012436745.1| (PREDICTED: uncharacterized protein LOC105763171 [Gossypium raimondii])

HSP 1 Score: 89.4 bits (220), Expect = 5.7e-15
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 6   AIPLSLSFLFLFLHLADSQPVLPVD-PQDPNSEIKCGSCPCSNPCVKQFPPPPPLPPPPN 65
           A+P++ S   L       + V+PV  PQ P +EIKCG+CPC NPC +Q  PPPP      
Sbjct: 25  AVPINASTKIL-------EEVVPVVVPQAPTTEIKCGACPCVNPCGQQSLPPPP------ 84

Query: 66  CKPALPPPPPPPRFIY--TSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRN 120
                     PPRF Y  T  SPPPPPRF Y TG+PG LY +D ++RW YFS   RN
Sbjct: 85  ----------PPRFTYCNTLPSPPPPPRFYYVTGMPGQLYGVDPDDRWRYFSNGGRN 118

The following BLAST results are available for this feature:

BLAST of CmoCh14G008660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G008660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7R0_CUCSA	1.5e-43	67.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G346900 PE=4 SV=1	[more]
A0A061EG52_THECC	3.8e-18	48.51	Uncharacterized protein OS=Theobroma cacao GN=TCM_019232 PE=4 SV=1	[more]
U5FGW6_POPTR	9.5e-17	44.06	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s03030g PE=4 SV=1	[more]
B9T3Z8_RICCO	2.8e-16	45.39	Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0336770 PE=4 SV=1	[more]
A0A0D2TXY8_GOSRA	4.0e-15	47.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058400 PE=4 SV=1	[more]

BLAST of CmoCh14G008660 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23040.1	5.5e-08	51.56	hydroxyproline-rich glycoprotein family protein	[more]
AT3G03350.2	5.5e-08	41.18	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of CmoCh14G008660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680858\|ref\|XP_011651408.1\|	2.2e-43	67.33	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus]	[more]
gi\|590652126\|ref\|XP_007033069.1\|	5.5e-18	48.51	Uncharacterized protein TCM_019232 [Theobroma cacao]	[more]
gi\|566211035\|ref\|XP_006372591.1\|	1.4e-16	44.06	hypothetical protein POPTR_0017s03030g [Populus trichocarpa]	[more]
gi\|255584475\|ref\|XP_002532967.1\|	3.9e-16	45.39	PREDICTED: formin-like protein 3 [Ricinus communis]	[more]
gi\|823205294\|ref\|XP_012436745.1\|	5.7e-15	47.01	PREDICTED: uncharacterized protein LOC105763171 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G008660.1	CmoCh14G008660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35094	FAMILY NOT NAMED	coord: 28..141 score: 7.9
None	No IPR available	PANTHER	PTHR35094:SF2	SUBFAMILY NOT NAMED	coord: 28..141 score: 7.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G008660	Cucsa.012670	Cucumber (Gy14) v1	cgycmoB0549
CmoCh14G008660	CmaCh14G008520	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G008660	Cla013170	Watermelon (97103) v1	cmowmB232
CmoCh14G008660	Csa3G346900	Cucumber (Chinese Long) v2	cmocuB229
CmoCh14G008660	MELO3C020289	Melon (DHL92) v3.5.1	cmomeB231
CmoCh14G008660	ClCG05G010960	Watermelon (Charleston Gray)	cmowcgB220
CmoCh14G008660	CSPI03G21850	Wild cucumber (PI 183967)	cmocpiB232
CmoCh14G008660	Lsi05G003050	Bottle gourd (USVL1VR-Ls)	cmolsiB237
CmoCh14G008660	Cp4.1LG03g05700	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G008660	MELO3C020289.2	Melon (DHL92) v3.6.1	cmomedB261
CmoCh14G008660	CsaV3_3G021620	Cucumber (Chinese Long) v3	cmocucB0272
CmoCh14G008660	Cla97C05G093250	Watermelon (97103) v2	cmowmbB244
CmoCh14G008660	Carg24226	Silver-seed gourd	carcmoB0248
CmoCh14G008660	Carg07444	Silver-seed gourd	carcmoB1031

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G008660	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G008660	Cucumber (Gy14) v2	cgybcmoB281
CmoCh14G008660	Wax gourd	cmowgoB0322
CmoCh14G008660	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh14G008660	Cucurbita maxima (Rimu)	cmacmoB462