Cp4.1LG08g00710 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g00710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Krueppel-like factor 17
Location	Cp4.1LG08 : 3963584 .. 3964778 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTATCCTTCATTTTGCACATTTCATACTTTCAGTGAATCATTTTCTTATGCAAAAACAAGTCATTTGAACCTTTATTCTTTTTGGTTTTGGTTTGAAGCGCATCAGATTTGAGTTAGAGGCACTCAACAGACAGCTATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGCGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAACGACAAAGTTAAAAGTAAGCTTTGAATTTGTTCTTAATAGTCTTACTTCATAATCCTAGCAATATCATTAACCTTATCCAGAATTCATAGCTTTTTTATTTCCTCTGTTTTTCTTTTAGTTAAATTTTCAGTTTAATCCATGAACTTTTAGGCTTTATATTGATAGGTTAAAAGACCTTTAAAAGTGTCGAGTAGATATTTAAACTTTCAATCTTGTGTCCAATAGAACCTACTAGACATAAAATTGAAACTTTAAAGTCTTCTTAGATATAAAATTTAACTCTATATGATCAATTAGTTTATTATTCAAATATGTCTGAGACATATAAGAAACTAAATGGAAAGTTCAATAATCAGACATTTTTAAAATTATGGGACCTATTAGATACACTTTTTTATGTTAAAAAATATCTTGGACACAAAATTGATAGTTCAACTACAAAACTTATGACACAACATTTTCTTTTTGATGTGTATGAGAGATAGACAGTGTGATTGACTATTGAAGTTTCTTTTTTGATGTGTTCTTGCAGAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAGAGTACAGAAGTATGAAGTTGTAATAAGATCATCCAGTTCTGGGTTTTGTTTTGTTGTCAATCCTTAGTTTTGGCACATATAAAGGAAAACATCTTTTATTGTCACTGTGAAGTTGTACAAAAATTGGAAGCAATAACCAGTAAGTTTTTCGAAGTTATGACTCCAATTCAGCTATTGGTTGTTTCTGTAGTTATAGATCAAGCACAAATGACAATAAATGCAATCATTTTTGGCATAAAGCTTATACAGATTG

mRNA sequence

TCCTATCCTTCATTTTGCACATTTCATACTTTCAGTGAATCATTTTCTTATGCAAAAACAAGTCATTTGAACCTTTATTCTTTTTGGTTTTGGTTTGAAGCGCATCAGATTTGAGTTAGAGGCACTCAACAGACAGCTATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGCGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAACGACAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAGAGTACAGAAGTATGAAGTTGTAATAAGATCATCCAGTTCTGGGTTTTGTTTTGTTGTCAATCCTTAGTTTTGGCACATATAAAGGAAAACATCTTTTATTGTCACTGTGAAGTTGTACAAAAATTGGAAGCAATAACCAGTAAGTTTTTCGAAGTTATGACTCCAATTCAGCTATTGGTTGTTTCTGTAGTTATAGATCAAGCACAAATGACAATAAATGCAATCATTTTTGGCATAAAGCTTATACAGATTG

Coding sequence (CDS)

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGCGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAACGACAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAG

Protein sequence

MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK

Homology

[Close]

BLAST of Cp4.1LG08g00710 vs. TrEMBL
Match: A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.9e-43
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
           IAGGIGAGMLVEIWINDK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Cp4.1LG08g00710 vs. TrEMBL
Match: B9SBE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.1e-37
Identity = 72/94 (76.60%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+   ++++KR P K+RQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cp4.1LG08g00710 vs. TrEMBL
Match: A0A067JX58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.2e-36
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSIN--ILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+    ++KKR P KVRQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
          G CIAGGIGAGML+EIWIN KVK+DGGV+WEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cp4.1LG08g00710 vs. TrEMBL
Match: A0A059CIH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-36
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP++  I+KKR P K+RQIPEYYFLPRRSL S LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWINDKVKKD-GGVVWEFDK 95
          CIAGGIGAGML+EIWIN KVK+D GGVVWEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

[Close]

BLAST of Cp4.1LG08g00710 vs. TrEMBL
Match: A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-36
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDP KGVDWKA+G ++QKDPS+    I+KKR P K+RQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cp4.1LG08g00710 vs. TAIR10
Match: AT5G16950.1 (AT5G16950.1 unknown protein)

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 1


Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSS----INILKKRRPTKVRQIPEYYFLPRRSLPSVL 61
          +E AKDP+KG +W       +K  +S    +   +K+ P  +    E YFLPR+  P  L
Sbjct: 3  SEGAKDPWKGEEWGTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 62

Query: 62 AFYGACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
          A+YG+ I GGIGAGM++E WIN KVK+DGGV+WEFDK
Sbjct: 63 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

[Close]

BLAST of Cp4.1LG08g00710 vs. NCBI nr
Match: gi|449432034|ref|XP_004133805.1| (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-43
Identity = 82/91 (90.11%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
           IAGGIGAGMLVEIWINDK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Cp4.1LG08g00710 vs. NCBI nr
Match: gi|659074925|ref|XP_008437869.1| (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-42
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGAC
Sbjct: 13  EQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
           IAGGIGAGMLVE+WINDK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Cp4.1LG08g00710 vs. NCBI nr
Match: gi|255564645|ref|XP_002523317.1| (PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-36
Identity = 72/94 (76.60%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+   ++++KR P K+RQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cp4.1LG08g00710 vs. NCBI nr
Match: gi|802694456|ref|XP_012083179.1| (PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas])

HSP 1 Score: 160.2 bits (404), Expect = 1.7e-36
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSIN--ILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+    ++KKR P KVRQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 95
          G CIAGGIGAGML+EIWIN KVK+DGGV+WEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cp4.1LG08g00710 vs. NCBI nr
Match: gi|702327691|ref|XP_010053841.1| (PREDICTED: uncharacterized protein LOC104442188 [Eucalyptus grandis])

HSP 1 Score: 159.5 bits (402), Expect = 2.9e-36
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP++  I+KKR P K+RQIPEYYFLPRRSL S LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWINDKVKKD-GGVVWEFDK 95
          CIAGGIGAGML+EIWIN KVK+D GGVVWEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g00710 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g00710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I7_CUCSA	3.9e-43	90.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1	[more]
B9SBE8_RICCO	7.1e-37	76.60	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1	[more]
A0A067JX58_JATCU	1.2e-36	77.66	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1	[more]
A0A059CIH1_EUCGR	2.1e-36	81.72	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1	[more]
A0A067KCR1_JATCU	7.8e-36	76.60	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g00710 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16950.1	1.4e-20	48.45	unknown protein	[more]

BLAST of Cp4.1LG08g00710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432034\|ref\|XP_004133805.1\|	5.5e-43	90.11	PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus]	[more]
gi\|659074925\|ref\|XP_008437869.1\|	4.7e-42	87.91	PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo]	[more]
gi\|255564645\|ref\|XP_002523317.1\|	1.0e-36	76.60	PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis]	[more]
gi\|802694456\|ref\|XP_012083179.1\|	1.7e-36	77.66	PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas]	[more]
gi\|702327691\|ref\|XP_010053841.1\|	2.9e-36	81.72	PREDICTED: uncharacterized protein LOC104442188 [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g00710.1	Cp4.1LG08g00710.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g00710	Cucsa.259360	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g00710	CmaCh00G005590	Cucurbita maxima (Rimu)	cmacpeB014
Cp4.1LG08g00710	CmoCh06G010290	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g00710	Cla021142	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g00710	Csa3G119440	Cucumber (Chinese Long) v2	cpecuB862
Cp4.1LG08g00710	MELO3C006010	Melon (DHL92) v3.5.1	cpemeB815
Cp4.1LG08g00710	ClCG05G000700	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g00710	CSPI03G07800	Wild cucumber (PI 183967)	cpecpiB864
Cp4.1LG08g00710	Lsi05G021360	Bottle gourd (USVL1VR-Ls)	cpelsiB714
Cp4.1LG08g00710	MELO3C006010.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g00710	CsaV3_3G007920	Cucumber (Chinese Long) v3	cpecucB1058
Cp4.1LG08g00710	CsGy3G007950	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g00710	Carg20905	Silver-seed gourd	carcpeB1380

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g00710	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g00710	Cucumber (Gy14) v2	cgybcpeB704
Cp4.1LG08g00710	Melon (DHL92) v3.6.1	cpemedB929
Cp4.1LG08g00710	Silver-seed gourd	carcpeB0180
Cp4.1LG08g00710	Cucumber (Chinese Long) v3	cpecucB1071
Cp4.1LG08g00710	Wax gourd	cpewgoB1098
Cp4.1LG08g00710	Wax gourd	cpewgoB1105
Cp4.1LG08g00710	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG08g00710	Cucurbita maxima (Rimu)	cmacpeB015
Cp4.1LG08g00710	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g00710	Cucurbita maxima (Rimu)	cmacpeB848