Cucsa.259360 (gene) Cucumber (Gy14) v1

NameCucsa.259360
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Locationscaffold02229 : 5897525 .. 5899627 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGCCACCCCCGCCTTCCCATTACCGGTCACTGCACCCCTTCCCGCCGTACGCCGCTGCCGCTCCACAGCATATCTTTTCCTATTTCATGTACCTGTGTCGTCTCGAACTGGTACGATTGAAGTTAGTTAGTTTTCAATTCATTTATATGATTTATATGCTATCTCAATCTTTACCATTCAACTCTATTTTTAGTTTTTGCAATCGTCCTTCTTCCTCGATTTCTTTGATTTGGGTTATCTCATCGACAATTTTTTTTCCTACTTTTCTTAGCTATCATTTACACGATGTTTTGGTTTACGCAATGGTTTGGTTTAAGTCTAAATTTTTGTTCTGCCATGGAATGACGGACTTCGATTGGAGAAAGTTCGCGAAAATTAGGGTTAAATGCTAAAGATATGTAAGCATCAAAACTGAAAAATGGGCTTGAATTCTTAGCGAAATGACTCATGATTGCCTTTTCATCCTCGCTTTACTTTTCCAGTATTGTTTTTCGATTGGTGCATTGTTCTTACTAGTAATATACTTAACCTTATTCTCTCGATAAACCTTCTCAATGCTTAAGATAAGATTATTTGAATAAATTTATAAGATATTTTCATTGGACTTTTTAGTTCGAAAGAAACAATCGAATTTTTAGGAGTGGGTGTTTTTTGTGTTGGGTGCATCTCACCTTTTTATGGCTCTATTTTGATGAGGATCATCGAACTGTAGTTATCTTCTCTTTGAGCTAGTTTAAAGTTTTTCTTATAATTCGATTCATTTAGACTAGCTGAGGCTTCCGGATCATTCTTCTTTACATATGTCATTCTTTTAGCGAATCGGGGAAAAAAGTAATTTGAACATTTTATGTGTTGTTTGGATTTGGAGGATTTAAAACGAGGAAATGAGTTCATTTTCCTAATTGCATTTGGAACCAAACTGGCTTGAAATCACCACAATTAAATCTTCTTGTTTGTGTAGCTATGGGAAATGAAAAGAAAGTGAGACATTGTACCCGAGAACTTTTATTAATAAGTCAAATATCATTTAATAAAAAACAAATCAACTAATTAAATTAAAACTCGAATGATCTACATTGTCAAAAAGAAAGAACTTACAAAAAGTCTAAAAGTTCAGAACCATTATTTTACAATTATATCTTTATAACCATATATAAACTAAACAATTGTTTGTAAATTTCTAAATCCTTTCACATCTGGTAGTTTCAAACAGAGAGTTATTTTTGCTTTAGGTTTGAAGGGCGTGAGAGTTGAGTTATAAGCAACCTAGAGATAGCTATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAGTAAGTTCTGAATATAGATCTTTACATATTCAAAATCTTGTTGTAAATCGATTAATGTTCGATTTCACACTTTTACACATGGTTTTAATAACCATTGAATTTTATTTTAAAAGAGTAAAAACATGTTTAGTACTGATTTTGAATATGACGAAAGGTATTTTTAGCTAGTTTAAGCTATAAATCTTCATGCTCCTGGAAGTATCTTTTCTCACATCTCTCTTTTTTTCTGATGTGTTCTTGTAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGGCAGATTGTTTCTCTAATTATTGATCAAGCACAAGTGATATTAAATGCACTCAC

mRNA sequence

CCAGCCACCCCCGCCTTCCCATTACCGGTCACTGCACCCCTTCCCGCCGTACGCCGCTGCCGCTCCACAGCATATCTTTTCCTATTTCATGTACCTGTGTCGTCTCGAACTGGTTTGAAGGGCGTGAGAGTTGAGTTATAAGCAACCTAGAGATAGCTATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGGCAGATTGTTTCTCTAATTATTGATCAAGCACAAGTGATATTAAATGCACTCAC

Coding sequence (CDS)

ATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK*
BLAST of Cucsa.259360 vs. TrEMBL
Match: A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-53
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of Cucsa.259360 vs. TrEMBL
Match: A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.8e-37
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSS--TNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDPLKGVDWKA+G ++QKDPS+    IIKKR P KIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 5   EPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           ACIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 65  ACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of Cucsa.259360 vs. TrEMBL
Match: B9SBE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-36
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSS--TNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDP KGVDWKA+GG++QKDPS+   ++I+KR P KIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 5   EPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           ACIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 65  ACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of Cucsa.259360 vs. TrEMBL
Match: A0A067JX58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-36
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTN--IIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDP KGVDWKA+GG++QKDPS++   +IKKR P K+RQIPDYYFLPRRSLPS +AFYG
Sbjct: 5   EPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
            CIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 65  GCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of Cucsa.259360 vs. TrEMBL
Match: B9GK55_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s11560g PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.3e-35
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTN--IIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDP KGVDWKA+GG++QKDPS+    IIKKR P KIRQIPDYYFLPR  LP+V+AFYG
Sbjct: 5   EPKDPFKGVDWKAIGGELQKDPSAGTKPIIKKRLPKKIRQIPDYYFLPRLPLPTVIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           ACIAGG+GAGML+E+WIN K+K+DGG+IWEFDK
Sbjct: 65  ACIAGGVGAGMLLEMWINKKVKEDGGIIWEFDK 97

BLAST of Cucsa.259360 vs. TAIR10
Match: AT5G16950.1 (AT5G16950.1 unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-19
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1

Query: 15  KDPLKGVDWKAVGGDMQKDPSSTNI-----IKKRRPTKIRQIPDYYFLPRRSLPSVMAFY 74
           KDP KG +W     +  K P+++ +      +K+ P  +    + YFLPR+  P  +A+Y
Sbjct: 7   KDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRALAYY 66

Query: 75  GACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           G+ I GGIGAGM++E WIN K+K+DGGVIWEFDK
Sbjct: 67  GSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

BLAST of Cucsa.259360 vs. NCBI nr
Match: gi|449432034|ref|XP_004133805.1| (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 2.9e-53
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of Cucsa.259360 vs. NCBI nr
Match: gi|659074925|ref|XP_008437869.1| (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 3.6e-51
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1

Query: 1   MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKGVEQKDP KGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKGVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of Cucsa.259360 vs. NCBI nr
Match: gi|802635256|ref|XP_012078200.1| (PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSS--TNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDPLKGVDWKA+G ++QKDPS+    IIKKR P KIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 5   EPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           ACIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 65  ACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of Cucsa.259360 vs. NCBI nr
Match: gi|255564645|ref|XP_002523317.1| (PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis])

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-36
Identity = 73/93 (78.49%), Postives = 84/93 (90.32%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSS--TNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDP KGVDWKA+GG++QKDPS+   ++I+KR P KIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 5   EPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           ACIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 65  ACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of Cucsa.259360 vs. NCBI nr
Match: gi|802694456|ref|XP_012083179.1| (PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas])

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-36
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 13  EQKDPLKGVDWKAVGGDMQKDPSSTN--IIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 72
           E KDP KGVDWKA+GG++QKDPS++   +IKKR P K+RQIPDYYFLPRRSLPS +AFYG
Sbjct: 5   EPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFYG 64

Query: 73  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
            CIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 65  GCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L8I7_CUCSA2.0e-5399.03Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1[more]
A0A067KCR1_JATCU7.8e-3780.65Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1[more]
B9SBE8_RICCO1.0e-3678.49Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1[more]
A0A067JX58_JATCU2.3e-3677.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1[more]
B9GK55_POPTR4.3e-3575.27Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s11560g PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16950.13.8e-1945.74 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449432034|ref|XP_004133805.1|2.9e-5399.03PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus][more]
gi|659074925|ref|XP_008437869.1|3.6e-5195.15PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo][more]
gi|802635256|ref|XP_012078200.1|1.1e-3680.65PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas][more]
gi|255564645|ref|XP_002523317.1|1.5e-3678.49PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis][more]
gi|802694456|ref|XP_012083179.1|3.3e-3677.42PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.259360.1Cucsa.259360.1mRNA


Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797FAMILY NOT NAMEDcoord: 13..103
score: 7.3

The following gene(s) are paralogous to this gene:

None