Carg20905 (gene) Silver-seed gourd

NameCarg20905
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerase subunit beta like
LocationCucurbita_argyrosperma_scaffold_141 : 267606 .. 269924 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTTTTGGGTGGTTTTTTTAATTAAAAAAAGAGTTTGCCCTAATTTGCTCATCGTGAATCTGTGCCTTTCCAACTCTCTCTCGAAATCAATCTTCATCTCTCATTGCTTAATACAATCCACTGGACCACCGCCCTCACGGCGTCGCACAACGTCAATTCCGGCCGCTTTCGATTCTTTTGCTTATCTCCCTTGGACTGGTAGGATTGAAGTTTTTGTTAGTTTTCCGATTCTTCCATTTTTCCATTTCTAGTTTCTGCTGTCGCCCCCTTCCTCGATTTCTTCGATTTACATTATGTCATCTACATTTTCCTACTTTTCTTGGTTATAATTTATGTGCTGTGTTTAGTTTATGTTATGAATTAAGTTTTGTTTAATTTTTTGTTTTTTAGTCGTAGAATTGGACTTGGGTTGATTAAGTAAAATCTGGAAATTGGGTTAAATGTTAAAAATCTGTAATCAAATCAAAACTGAAGAATGTGCTTGAATTCTATGCTGTGAGTGAGGCAAACACTGGCGAAGAAACTCAGGATTGCCTTTCCATCCTCTGTTCAGTAGCATTGCTTTTCCGGCATTACCGTCGTTTGGTACCTTTTTCTTCCTAGTAATATTATTAAATGAACATTCTTCACTTTGCTTCCATGATCACCCTCCCAATGCTGAAGCATTAGACTTATTTGGAATAATTAAGGGTTTTCTTTGGAATTTTTAGTTGGGAAGGAACAATAGAGTTCTTCCGGGAGCATATTGGTTTCTTATGGCTCTACTTTGGTGCAGATTATCCAACCCTTTTTCATACTATATAGGTTATCTTCTCTTTGATCCAGTTCGAAAGTTTTCTTGTAAATCTATTCTTTTAGCCAGGCTGAGGCCGAGGCTGAGGCTGAGGCTGAGGCTTTCCTATCCTTCATTTTGCACATTTCATACTTTCAGTGAATCATTTTCTTATGCAAGACAAGTAATTTGAACCTTTATTCTTTTTGGTTTTGGTTTGAAGCGTATCAGATTTGAGTTAGAGGCAATCAACAGACAGCTATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAGTAAGCTTTGAATTTGCTTTTAATAGTCTTACTTCATAATCCTAGCAATACCATTAACCTTATCCATAATTCATAGCTTTTTTACTTCCTCTGTTTTTCTTTTAGTTAAATTATCGATAGGTTTCTCAAACTTGGAAAAGACCTTTAGAAGTGTCCGATACGATAGATATTTAAACTTTCAATCTTGTGTCCAATAGAACCTACTCGACATAAAATTGAAACTTTAAAATCATTCGTGCTTTTTAAAATTTATGATCCTACATGACATGAAATTGAAATTTTAAAGTCTTCATTCAATTCTATATCTAATTGATCAATTAGTTTATTAAATTTTCAAATATGTTAGGGACATATAAGAAACTAAATGGAAAATTCAAGAACCTACTCGATATTTCTAAAATTAAGGGACCTATTAGATACACTTTTTTATGTAAAAAAATGTCTTGAACACAAAATTGATAGTTCAATGACAAAATCTATGACTTAACATTTTCTTTTTGATGTGTATAAGAAATAGACAGTGTGATTGACTATTGAAGTTTCTTTTTCGATGTGTTCTTGCAGAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAGAGTACAGAAGTATGAAGTTGTAATAAGATCATCCAGTTCTGGGTTTTTGTTTTGTTGTCAATTCTTAGTTTTGGCACATATAAAGGAAAACATCTTTTATTGTCACTGTGAAGTTGTACAAAAATTGGAAGCAATAACCAGTAAGTTTTTCGAAGTTATGACTCCAATTCAGCTATTGGTTGTTTCTGTAGTGATAGATCAAGCACAAATGACAATAAATGCAATCATTTTTGGTATAAAGTTTATACAGATTGTTGCTTTGCTCTGGTAAAGCTGGGTTTTGGTGGATATCATGTGCTAGTAATCTTATCATGTTTCCCTGCCTAGCAACAGTTTTTTCTTCTTCTTATCAATAATATTCTCCCCACATCCCCTCGAAGATATCTCTTAACTAATTGAGTTATGCTTAAGTTTACCATCTCTTGTAAAGTCTCC

mRNA sequence

TAATTTTTGGGTGGTTTTTTTAATTAAAAAAAGAGTTTGCCCTAATTTGCTCATCGTGAATCTGTGCCTTTCCAACTCTCTCTCGAAATCAATCTTCATCTCTCATTGCTTAATACAATCCACTGGACCACCGCCCTCACGGCGTCGCACAACGTCAATTCCGGCCGCTTTCGATTCTTTTGCTTATCTCCCTTGGACTGCGTATCAGATTTGAGTTAGAGGCAATCAACAGACAGCTATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAGAGTACAGAAGTATGAAGTTGTAATAAGATCATCCAGTTCTGGGTTTTTGTTTTGTTGTCAATTCTTAGTTTTGGCACATATAAAGGAAAACATCTTTTATTGTCACTGTGAAGTTGTACAAAAATTGGAAGCAATAACCAGTAAGTTTTTCGAAGTTATGACTCCAATTCAGCTATTGGTTGTTTCTGTAGTGATAGATCAAGCACAAATGACAATAAATGCAATCATTTTTGGTATAAAGTTTATACAGATTGTTGCTTTGCTCTGGTAAAGCTGGGTTTTGGTGGATATCATGTGCTAGTAATCTTATCATGTTTCCCTGCCTAGCAACAGTTTTTTCTTCTTCTTATCAATAATATTCTCCCCACATCCCCTCGAAGATATCTCTTAACTAATTGAGTTATGCTTAAGTTTACCATCTCTTGTAAAGTCTCC

Coding sequence (CDS)

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAG

Protein sequence

MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
BLAST of Carg20905 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 3.2e-47
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

BLAST of Carg20905 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 1.2e-46
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          GACIAGGIGAGMLVEIWI DKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWINDKVKKDGGVVWEFDK 94

BLAST of Carg20905 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 193.7 bits (491), Expect = 2.7e-46
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0

Query: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60
          MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSL SVLAFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 94

BLAST of Carg20905 vs. NCBI nr
Match: XP_023915908.1 (uncharacterized protein LOC112027472 [Quercus suber] >POF25645.1 hypothetical protein CFP56_17904 [Quercus suber])

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-37
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE KDPFKGVDWKAVGGDMQKDP +  ++KKR P K+RQIPE YFLPRRSLPS +AFYG+
Sbjct: 4  EETKDPFKGVDWKAVGGDMQKDPGAKPVIKKRLPKKIRQIPECYFLPRRSLPSAIAFYGS 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          CIAGGIGAGML+EIWIK KVK+DGGV+WEFDK
Sbjct: 64 CIAGGIGAGMLLEIWIKKKVKEDGGVIWEFDK 95

BLAST of Carg20905 vs. NCBI nr
Match: PON34491.1 (krueppel-like factor [Parasponia andersonii] >PON52087.1 krueppel-like factor [Trema orientalis])

HSP 1 Score: 160.2 bits (404), Expect = 3.4e-36
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 0

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYG 61
          +E+AKDPFKGVDWKAVG ++QKDPSS  ++KKR P K+RQIP+YYFLPRRSLPS + FYG
Sbjct: 3  SEDAKDPFKGVDWKAVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYG 62

Query: 62 ACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          ACIAGGIGAGML+EIWI  K+K+DGGV+WEFDK
Sbjct: 63 ACIAGGIGAGMLLEIWINKKIKEDGGVIWEFDK 95

BLAST of Carg20905 vs. TAIR10
Match: AT5G16950.1 (unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-20
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSS----INILKKRRPTKVRQIPEYYFLPRRSLPSVL 61
          +E AKDP+KG +W       +K  +S    +   +K+ P  +    E YFLPR+  P  L
Sbjct: 3  SEGAKDPWKGEEWGTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 62

Query: 62 AFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          A+YG+ I GGIGAGM++E WI  KVK+DGGV+WEFDK
Sbjct: 63 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

BLAST of Carg20905 vs. TrEMBL
Match: tr|A0A2P4N7B9|A0A2P4N7B9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_17904 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.0e-37
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 0

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE KDPFKGVDWKAVGGDMQKDP +  ++KKR P K+RQIPE YFLPRRSLPS +AFYG+
Sbjct: 4  EETKDPFKGVDWKAVGGDMQKDPGAKPVIKKRLPKKIRQIPECYFLPRRSLPSAIAFYGS 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          CIAGGIGAGML+EIWIK KVK+DGGV+WEFDK
Sbjct: 64 CIAGGIGAGMLLEIWIKKKVKEDGGVIWEFDK 95

BLAST of Carg20905 vs. TrEMBL
Match: tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA (Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 0

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYG 61
          +E+AKDPFKGVDWKAVG ++QKDPSS  ++KKR P K+RQIP+YYFLPRRSLPS + FYG
Sbjct: 3  SEDAKDPFKGVDWKAVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYG 62

Query: 62 ACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          ACIAGGIGAGML+EIWI  K+K+DGGV+WEFDK
Sbjct: 63 ACIAGGIGAGMLLEIWINKKIKEDGGVIWEFDK 95

BLAST of Carg20905 vs. TrEMBL
Match: tr|A0A2P5AD68|A0A2P5AD68_PARAD (Krueppel-like factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344140 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 0

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYG 61
          +E+AKDPFKGVDWKAVG ++QKDPSS  ++KKR P K+RQIP+YYFLPRRSLPS + FYG
Sbjct: 3  SEDAKDPFKGVDWKAVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYG 62

Query: 62 ACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          ACIAGGIGAGML+EIWI  K+K+DGGV+WEFDK
Sbjct: 63 ACIAGGIGAGMLLEIWINKKIKEDGGVIWEFDK 95

BLAST of Carg20905 vs. TrEMBL
Match: tr|A0A2N9IUI6|A0A2N9IUI6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56939 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-36
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE KDPFKGVDWKAVGGDMQKDP +  ++KKR P K+RQIPE YFLPRRSLPS + FYGA
Sbjct: 4  EETKDPFKGVDWKAVGGDMQKDPGAKPVIKKRLPKKIRQIPECYFLPRRSLPSAIGFYGA 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          CIAGGIGAGML+EIWI  KVK+DGGV+WEFD+
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGVIWEFDQ 95

BLAST of Carg20905 vs. TrEMBL
Match: tr|A0A2I0IMP0|A0A2I0IMP0_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_034658 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.8e-36
Identity = 72/92 (78.26%), Postives = 81/92 (88.04%), Query Frame = 0

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP    ++KKR P K+RQIPE YFLPRRSLPS LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGNDLQKDPGGKPVVKKRLPRKIRQIPECYFLPRRSLPSALAFYGA 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          CIAGG+GAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 CIAGGVGAGMLLEIWINKKVKEDGGVIWEFDK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022942020.13.2e-47100.00uncharacterized protein LOC111447184 [Cucurbita moschata][more]
XP_023522177.11.2e-4698.94uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo][more]
XP_022975548.12.7e-4698.94uncharacterized protein LOC111475080 [Cucurbita maxima][more]
XP_023915908.13.0e-3780.43uncharacterized protein LOC112027472 [Quercus suber] >POF25645.1 hypothetical pr... [more]
PON34491.13.4e-3676.34krueppel-like factor [Parasponia andersonii] >PON52087.1 krueppel-like factor [T... [more]
Match NameE-valueIdentityDescription
AT5G16950.19.2e-2047.42unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A2P4N7B9|A0A2P4N7B9_QUESU2.0e-3780.43Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_17904 PE=4 SV=1[more]
tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA2.2e-3676.34Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1[more]
tr|A0A2P5AD68|A0A2P5AD68_PARAD2.2e-3676.34Krueppel-like factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344140 PE=4 ... [more]
tr|A0A2N9IUI6|A0A2N9IUI6_FAGSY2.9e-3678.26Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56939 PE=4 SV=1[more]
tr|A0A2I0IMP0|A0A2I0IMP0_PUNGR3.8e-3678.26Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_034658 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20905-RACarg20905-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797FAMILY NOT NAMEDcoord: 2..94