CsGy3G007950 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007950
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Krueppel-like factor 17
Location	Chr3 : 6725853 .. 6726788 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAGTAAGTTCTGAATATAGATCTTTACATATTCAAAATCTTGTTGTAAATCGATTAATGTTCGATTTCACACTTTTACACATGGTTTTAATAACCATTGAATTTTATTTTAAAAGAGTAAAAACATGTTTAGTACTGATTTTGAATATGACGAAAGGTATTTTTAGCTAGTTTAAGCTATAAATCTTCATGCTCCTGGAAGTATCTTTTCTCACATCTCTCTTTTTTTCTGATGTGTTCTTGTAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGGCAGATTGTTTCTCTAATTATTGATCAAGCACAAGTGATATTAAATGCACTCACTTTTGGTAAACCTTGCACAGATTGTTGTTTTAATCTGCTAAAGTTGGGTTTAGGTGTGACATTGCTCTAGGTAATAAGCCTCCTCTGATGTGTAATACCTTACTGAATTTAAA

mRNA sequence

ATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGGCAGATTGTTTCTCTAATTATTGATCAAGCACAAGTGATATTAAATGCACTCACTTTTGGTAAACCTTGCACAGATTGTTGTTTTAATCTGCTAAAGTTGGGTTTAGGTGTGACATTGCTCTAGGTAATAAGCCTCCTCTGATGTGTAATACCTTACTGAATTTAAA

Coding sequence (CDS)

ATGGGAGTAGAGCGAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGVERNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAEDGGVIWEFDK

Homology

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_004133805.1 (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_3G119440 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MGVERNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGA-------------EDGGVIWEFDK 91
           SLPSVMAFYGACIAGGIGA             +DGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 4.5e-30
Identity = 86/103 (83.50%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MGVERNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGA-------------EDGGVIWEFDK 91
            LP VMAFYGACIAGGIGA             +DGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 25 AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGA----- 84
          AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGACIAGGIGA     
Sbjct: 16 AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVE 75

Query: 85 --------EDGGVIWEFDK 91
                  +DGGV+WEFDK
Sbjct: 76 IWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 4.4e-25
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 25 AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGA----- 84
          AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGACIAGGIGA     
Sbjct: 16 AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVE 75

Query: 85 --------EDGGVIWEFDK 91
                  +DGGV+WEFDK
Sbjct: 76 IWINDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 3.7e-24
Identity = 58/79 (73.42%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 25 AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGA----- 84
          AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSL SV+AFYGACIAGGIGA     
Sbjct: 16 AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFYGACIAGGIGAGMLVE 75

Query: 85 --------EDGGVIWEFDK 91
                  +DGGV+WEFDK
Sbjct: 76 IWIKDKVKKDGGVVWEFDK 94

[Close]

BLAST of CsGy3G007950 vs. TAIR10
Match: AT5G16950.1 (unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 4.5e-08
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 41 KKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGA-------------EDGGVIWE 91
          +K+ P  +    + YFLPR+  P  +A+YG+ I GGIGA             EDGGVIWE
Sbjct: 37 RKQIPRGLEDKYEAYFLPRKPWPRALAYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWE 96

[Close]

BLAST of CsGy3G007950 vs. TrEMBL
Match: tr|A0A0A0L8I7|A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 88/103 (85.44%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MGVERNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGA-------------EDGGVIWEFDK 91
           SLPSVMAFYGACIAGGIGA             +DGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. TrEMBL
Match: tr|A0A1S3AV52|A0A1S3AV52_CUCME (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.0e-30
Identity = 86/103 (83.50%), Postives = 88/103 (85.44%), Query Frame = 0


Query: 1   MGVERNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVE+NDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGA-------------EDGGVIWEFDK 91
            LP VMAFYGACIAGGIGA             +DGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of CsGy3G007950 vs. TrEMBL
Match: tr|A0A067KCR1|A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-21
Identity = 62/106 (58.49%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1  MGVER-NDPLKXXXXXXXXXXXXXXAVGGDMQKDPS--STNIIKKRRPTKIRQIPDYYFL 60
          MG+E   DPLK              A+G ++QKDPS  +  IIKKR P KIRQIPDYYFL
Sbjct: 1  MGIEEPKDPLK---------GVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFL 60

Query: 61 PRRSLPSVMAFYGACIAGGIGA-------------EDGGVIWEFDK 91
          PRRSLPS +AFYGACIAGGIGA             EDGGVIWEFDK
Sbjct: 61 PRRSLPSAIAFYGACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of CsGy3G007950 vs. TrEMBL
Match: tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA (Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 25 AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGA----- 84
          AVG ++QKDPSS  +IKKR P K+RQIPDYYFLPRRSLPS + FYGACIAGGIGA     
Sbjct: 17 AVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYGACIAGGIGAGMLLE 76

Query: 85 --------EDGGVIWEFDK 91
                  EDGGVIWEFDK
Sbjct: 77 IWINKKIKEDGGVIWEFDK 95

[Close]

BLAST of CsGy3G007950 vs. TrEMBL
Match: tr|A0A2P5AD68|A0A2P5AD68_PARAD (Krueppel-like factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344140 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 25 AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGA----- 84
          AVG ++QKDPSS  +IKKR P K+RQIPDYYFLPRRSLPS + FYGACIAGGIGA     
Sbjct: 17 AVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYGACIAGGIGAGMLLE 76

Query: 85 --------EDGGVIWEFDK 91
                  EDGGVIWEFDK
Sbjct: 77 IWINKKIKEDGGVIWEFDK 95

The following BLAST results are available for this feature:

BLAST of CsGy3G007950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133805.1	2.4e-31	85.44	PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hy...	[more]
XP_008437869.1	4.5e-30	83.50	PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo]	[more]
XP_022942020.1	4.4e-25	74.68	uncharacterized protein LOC111447184 [Cucurbita moschata]	[more]
XP_023522177.1	4.4e-25	74.68	uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo]	[more]
XP_022975548.1	3.7e-24	73.42	uncharacterized protein LOC111475080 [Cucurbita maxima]	[more]

BLAST of CsGy3G007950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G16950.1	4.5e-08	44.44	unknown protein	[more]

BLAST of CsGy3G007950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G007950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8I7\|A0A0A0L8I7_CUCSA	1.6e-31	85.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1	[more]
tr\|A0A1S3AV52\|A0A1S3AV52_CUCME	3.0e-30	83.50	uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=...	[more]
tr\|A0A067KCR1\|A0A067KCR1_JATCU	4.3e-21	58.49	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12070 PE=4 SV=1	[more]
tr\|A0A2P5BTF0\|A0A2P5BTF0_9ROSA	5.6e-21	68.35	Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1	[more]
tr\|A0A2P5AD68\|A0A2P5AD68_PARAD	5.6e-21	68.35	Krueppel-like factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344140 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007950.1	CsGy3G007950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36797	FAMILY NOT NAMED	coord: 13..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007950	Cla021142	Watermelon (97103) v1	cgybwmB217
CsGy3G007950	Csa3G119440	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007950	MELO3C006010	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007950	ClCG05G000700	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007950	CSPI03G07800	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007950	CmaCh06G009750	Cucurbita maxima (Rimu)	cgybcmaB443
CsGy3G007950	CmoCh06G010290	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007950	Lsi05G021360	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007950	Cp4.1LG08g00710	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007950	MELO3C006010.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007950	CsaV3_3G007920	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G007950	Cla97C05G080810	Watermelon (97103) v2	cgybwmbB196
CsGy3G007950	Carg20905	Silver-seed gourd	carcgybB0980

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007950	Wild cucumber (PI 183967)	cgybcpiB126
CsGy3G007950	Silver-seed gourd	carcgybB0131
CsGy3G007950	Cucumber (Chinese Long) v3	cgybcucB130
CsGy3G007950	Watermelon (97103) v2	cgybwmbB166
CsGy3G007950	Watermelon (97103) v2	cgybwmbB214
CsGy3G007950	Wax gourd	cgybwgoB249
CsGy3G007950	Wax gourd	cgybwgoB272
CsGy3G007950	Wax gourd	cgybwgoB282
CsGy3G007950	Cucumber (Gy14) v2	cgybcgybB085
CsGy3G007950	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G007950	Cucurbita maxima (Rimu)	cgybcmaB401
CsGy3G007950	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007950	Cucurbita maxima (Rimu)	cgybcmaB464
CsGy3G007950	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G007950	Cucurbita moschata (Rifu)	cgybcmoB372
CsGy3G007950	Cucurbita moschata (Rifu)	cgybcmoB430
CsGy3G007950	Cucurbita pepo (Zucchini)	cgybcpeB359
CsGy3G007950	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G007950	Cucurbita pepo (Zucchini)	cgybcpeB428
CsGy3G007950	Cucumber (Chinese Long) v2	cgybcuB125
CsGy3G007950	Bottle gourd (USVL1VR-Ls)	cgyblsiB137
CsGy3G007950	Melon (DHL92) v3.5.1	cgybmeB142
CsGy3G007950	Melon (DHL92) v3.5.1	cgybmeB218
CsGy3G007950	Melon (DHL92) v3.6.1	cgybmedB139
CsGy3G007950	Watermelon (Charleston Gray)	cgybwcgB189
CsGy3G007950	Watermelon (Charleston Gray)	cgybwcgB221
CsGy3G007950	Watermelon (97103) v1	cgybwmB238
CsGy3G007950	Watermelon (97103) v1	cgybwmB243