CsaV3_3G007920 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G007920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionDNA-directed RNA polymerase subunit beta like
Locationchr3 : 6877662 .. 6880112 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGAGGTTCCATAGCATAAAAAATTATACATATATCAATGAGTTATAAGGATAGAATTAATTTCTCATTGTGCTATTTATTCTCATAATCTTTCAAGACTTAGCAAAATCGTCATAAATTCCCTTTAACTTTTCACAAAGTTCTCTTGGTAAAATGACTAAATAATATGTCTAAGGAGGATGCATTAGATTTTCTGTAACCCTATTTCACGACCAGCCACCCCCGCCTTCCCATTACCGGTCACTGCACCCCTTCCCGCCGTACGCCGCTGCCGCTCCACAGCATATCTTTTCCTATTTCATGTACCTGTGTCGTCTCGAACTGGTACGATTGAAGTTAGTTAGTTTTCAATTCATTTATATGATTTATATGCTATCTCAATCTTTACCATTCAACTCTATTTTTAGTTTTTGCAATCGTCCTTCTTCCTCGATTTCTTTGATTTGGGTTATCTCATCGACAATTTTTTTTCCTACTTTTCTTAGCTATCATTTACACGATGTTTTGGTTTACGCAATGGTTTGGTTTAAGTCTAAATTTTTGTTCTGCCATGGAATGACGGACTTCGATTGGAGAAAGTTCGCGAAAATTAGGGTTAAATGCTAAAGATATGTAAGCATCAAAACTGAAAAATGGGCTTGAATTCTTAGCGAAATGACTCATGATTGCCTTTTCATCCTCGCTTTACTTTTCCAGTATTGTTTTTCGATTGGTGCATTGTTCTTCCTAGTAATATACTTAACCTTATTCTCTCGATAAACCTTCTCAATGCTTAAGATAAGATTATTTGAATAAATTTATAAGATATTTTCATTGGACTTTTTAGTTCGAAAGAAACAATCGAATTTTTAGGAGTGGGTGTTTTTTGTGTTGGGTGCATCTCACCTTTTTATGGCTCTATTTTGATGAGGATTATCGAACTGTAGTTATCTTCTCTTTGAGCTAGTTTAAAGTTTTTCTTATAATTCGATTCATTTAGACTAGCTGAGGCTTCCGGATCATTCTTCTTTACATATGTCATACTTTTAGCGAATCGGGGAAAAAAGTAATTTGAACATTTTATGTGTTGTTTGGATTTGGAGGATTTAAAACGAGGAAATGAGTTCATTTTCCTAATTGCATTTGGAACCAAACTGGCTTGAAATCACCACAATTAAATCTTCTTGTTTGTGTAGCTATGGGAAATGAAAAGAAAGTGAGACATTGTACCCGAGAACTTTCATTAATAAGTCAAATATCATTTAATAAAAAACAAATCAACTAATTAAATTAAAACTCGAATGATCTACATTGTCAAAAAGAAAGAACTTACAAAAAGTCTAAAAGTTCAGAACCATTATTTTACAATTATATCATCTTTATAACCATATATAAACTAAACAATTGTTTGTAAATTTCTAAATCCTTTCACATCTGGTAGTTTCAAATAGAGAGTTATTTTTGCTTTAGGTTTGAAGGGCGTGAGAGTTGAGTTATAAGCAACCTAGAGATAGCTATGGGAGTAGAGCAAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAGTAAGTTCTGAATATAGATCTTTACATATTCAAAATCTTGTTGTAAATCGATTAATGTTCGATTTCACACTTTTACACATGGTTTTAATAACCATTGAATTTTATTTTAAAAGAGTAAAAACATGTTTAGTACTGATTTTGAATATGACGAAAGGTATTTTTAGCTAGTTTAAGCTATAAATCTTCATGCTCCTGGAAGTATCTTTTCTCACATCTCTCTTTTTTTCTGATGTGTTCTTGTAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAATATGAAGTTGCATTATTCAAACAGAACAAGATCGTCCAGTTGCTGGGTTTTGTTTTATTGTTAATCCTAGTTTTGGAACATGTAAGCGAACATCTTTTAATGCCTCAATGAAGCTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTTTCAAAGCCATACTTAACCTCCAATTCAGTTATTGGCAGTTTGTTTCTCTAATTATTGATCAAGCACAAGTGATATTAAATGCACTCACTTTTGGTAAACCTTGCACAGATTGTTGTTTTAATCTGCTAAAGTTGGGTTTAGGTGTGATATTGCTCTAGGTAATAAGCCTCCTCTGATGTGTAATACCCTACTGAATTTAAAACAGACATTATTTTTTTG

mRNA sequence

ATGGGAGTAGAGCAAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Coding sequence (CDS)

ATGGGAGTAGAGCAAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTGAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGTTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGAATCGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGVEQNDPLKGVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
BLAST of CsaV3_3G007920 vs. NCBI nr
Match: XP_004133805.1 (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_3G119440 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-43
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of CsaV3_3G007920 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.7e-41
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of CsaV3_3G007920 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVE 84
           AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGACIAGGIGAGMLVE
Sbjct: 16  AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVE 75

Query: 85  IWINDKIKKDGGVIWEFDK 104
           IWINDK+KKDGGV+WEFDK
Sbjct: 76  IWINDKVKKDGGVVWEFDK 94

BLAST of CsaV3_3G007920 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 71/79 (89.87%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVE 84
           AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGACIAGGIGAGMLVE
Sbjct: 16  AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVE 75

Query: 85  IWINDKIKKDGGVIWEFDK 104
           IWI DK+KKDGGV+WEFDK
Sbjct: 76  IWIKDKVKKDGGVVWEFDK 94

BLAST of CsaV3_3G007920 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 155.2 bits (391), Expect = 1.2e-34
Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVE 84
           AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSL SV+AFYGACIAGGIGAGMLVE
Sbjct: 16  AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFYGACIAGGIGAGMLVE 75

Query: 85  IWINDKIKKDGGVIWEFDK 104
           IWI DK+KKDGGV+WEFDK
Sbjct: 76  IWIKDKVKKDGGVVWEFDK 94

BLAST of CsaV3_3G007920 vs. TAIR10
Match: AT5G16950.1 (unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-16
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 41  KKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWE 100
           +K+ P  +    + YFLPR+  P  +A+YG+ I GGIGAGM++E WIN K+K+DGGVIWE
Sbjct: 37  RKQIPRGLEDKYEAYFLPRKPWPRALAYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWE 96

Query: 101 FDK 104
           FDK
Sbjct: 97  FDK 99

BLAST of CsaV3_3G007920 vs. TrEMBL
Match: tr|A0A0A0L8I7|A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.7e-43
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of CsaV3_3G007920 vs. TrEMBL
Match: tr|A0A1S3AV52|A0A1S3AV52_CUCME (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of CsaV3_3G007920 vs. TrEMBL
Match: tr|A0A067KCR1|A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-30
Identity = 71/106 (66.98%), Postives = 81/106 (76.42%), Query Frame = 0

Query: 1   MGVEQ-NDPLKXXXXXXXXXXXXXXAVGGDMQKDPS--STNIIKKRRPTKIRQIPDYYFL 60
           MG+E+  DPLK              A+G ++QKDPS  +  IIKKR P KIRQIPDYYFL
Sbjct: 1   MGIEEPKDPLK---------GVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFL 60

Query: 61  PRRSLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 104
           PRRSLPS +AFYGACIAGGIGAGML+EIWIN K+K+DGGVIWEFDK
Sbjct: 61  PRRSLPSAIAFYGACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of CsaV3_3G007920 vs. TrEMBL
Match: tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA (Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVE 84
           AVG ++QKDPSS  +IKKR P K+RQIPDYYFLPRRSLPS + FYGACIAGGIGAGML+E
Sbjct: 17  AVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYGACIAGGIGAGMLLE 76

Query: 85  IWINDKIKKDGGVIWEFDK 104
           IWIN KIK+DGGVIWEFDK
Sbjct: 77  IWINKKIKEDGGVIWEFDK 95

BLAST of CsaV3_3G007920 vs. TrEMBL
Match: tr|A0A2P5AD68|A0A2P5AD68_PARAD (Krueppel-like factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344140 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-30
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGACIAGGIGAGMLVE 84
           AVG ++QKDPSS  +IKKR P K+RQIPDYYFLPRRSLPS + FYGACIAGGIGAGML+E
Sbjct: 17  AVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYGACIAGGIGAGMLLE 76

Query: 85  IWINDKIKKDGGVIWEFDK 104
           IWIN KIK+DGGVIWEFDK
Sbjct: 77  IWINKKIKEDGGVIWEFDK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004133805.14.1e-43100.00PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hy... [more]
XP_008437869.11.7e-4197.09PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo][more]
XP_023522177.12.8e-3691.14uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo][more]
XP_022942020.11.4e-3589.87uncharacterized protein LOC111447184 [Cucurbita moschata][more]
XP_022975548.11.2e-3488.61uncharacterized protein LOC111475080 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G16950.12.3e-1655.56unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L8I7|A0A0A0L8I7_CUCSA2.7e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1[more]
tr|A0A1S3AV52|A0A1S3AV52_CUCME1.1e-4197.09uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=... [more]
tr|A0A067KCR1|A0A067KCR1_JATCU2.0e-3066.98Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12070 PE=4 SV=1[more]
tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA3.4e-3081.01Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1[more]
tr|A0A2P5AD68|A0A2P5AD68_PARAD3.4e-3081.01Krueppel-like factor OS=Parasponia andersonii OX=3476 GN=PanWU01x14_344140 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G007920.1CsaV3_3G007920.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797FAMILY NOT NAMEDcoord: 13..103

The following gene(s) are paralogous to this gene:

None