MELO3C006010.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C006010.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionKrueppel-like factor 17
Locationchr06 : 547443 .. 549610 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACATAGGTTATGCTCCCCCCGCGCCCCATCATAGCTTTGATTTAAACCCTATTTCACCACCACCCATCCCCGCCCTCTCACTACCGGACACTGCAGCCCTTTCCGGTGTACGCCGCTGCCGCTGCCGCTCCAGAGCATATATTTTTCTATTTCATGTACCTGCCTCGAACTGGTACGATTGAAGTTTTTGTTGATTTTCAGTTCATTTATATGATTTATGCTATCTGGATGTTTACCATTCAACTCTATTTTTAGTTTTTGCAATCGTCCCTCTTCCTCGACTTCTTTGATTTGCGTTATCTCATCGACATTTTTTTCCTACTTTTCTTAGCTATCATTTACACGATGTTTTGGTTTACGCAATGATTTGATTTAACTATAAATTTTTGTTCTGCCGTATAATCGGACTTCGATTGGAGAAAGTTCGCAAACATTAGGGTTAAATGCTAAAGACGTTTAAGCATCTCAGCTGAAAAATGGGCTTAAATGCTTAGCGAAAAAACTCGTGATTGCCTTTTCATCCTCGCTTTACTTTTCCAGTATTATTTTTCGATTGGTGCATTGTTAGTTTTAGTAATATACTTAACCTTCTTCGCTTTTGCTTAGACGATAAACCTTATCAATGCTTAAGCTAAGATAGTCTGTAATAAATTTATAAGATCTTTTCGTTGGACTTTTTAGTTGGGAAGAAACAATCGAATTTTTAGGAGTAGGTGCTTTTTGAGTTGGGTGCATCTCACCTTTCTATGGCTCTATTTCGATGAGGATTGTCGAACTGTAGTTATCTTCTCTTTGAGCTAGTTTAAAGTTTTTCTCATAATTCGATTCATTTAGACTAGCTGAGGCTTCCGTATCATTCTTCTTTACATAAGTCATACTTTAGCGAATCGGGGAAAAAAGTAATTTGAACATTTTATGTGTTGTTTGGATTTGGAGGATTTAAAACGAGGACATGAGTTCACTTTCCTAATTGCATTTGGAACCAAACTGGCTAGATCACCACAATTAAATCTTCTTGTTTGTATAGCTATGAGAAATGAAAAGAAAGCGAGACATTGTACCCGAGAACTTTTATTAATAAGTCAAATATCATTTAATAAAAATGAAATCAACTTATTGAATTAAAACTCGAATGATCTACATTGTCAAAAAGAAAGAAAAAACTGACAAATTCTAAAATTTCAGAACAATTATTTTACAATTATATCTTTATAACCATATATAAACTAAACAATTGTTTGTAAATTTATATATCCTTTCACATCTGCTGGTTCCTAACAGAGAGTCATTTTTGTTTTAGGTTGAAGGGCGTGAGAGTTGAGTTAGAAGCAACCTAGAGATAGCTATGGGAGTAGAGCAAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTCAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGCTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGACCCCTTCCTTATGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGTATCGGTGCTGGTATGCTGGTGGAGATGTGGATAAATGATAAAATTAAAAGTAAGTTCTGAATATAGATCTTTACATATTCAAAATCTTGTTGTAAATTGATTAATGCTCGATTTCACACTTATACACACAGTTTTAATAACCATGAAATTTTATTTTAAAAGAGTAGAAACATGTTTAGTACTGATTTTGAATACTGACAAAGGGTATTTTTAGCCAGTTTAAGCTATAAATCTTCATGCTCCTGGAAGTATCTTTTCTGACATCTCTCTGTTTTTCTTTTTAATCTACATCTATGCAAGATAAGTCAGTGCGATTGATTATTGATTTTCCTTTCTGATGTGTTCTTACAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAGTTGAAGTTGGAACAAGATCGTCGTGTTGCTGGGTTTTGTTTTATTGTTAATCTTAGTTATGGAACATGTAATGTAAGTGAACATCTTTTTAATGCCTCAATGAAGTTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTCTTTTTTAAAGCGATAAATAACCTCCAATTCAGTTA

mRNA sequence

GCACATAGGTTATGCTCCCCCCGCGCCCCATCATAGCTTTGATTTAAACCCTATTTCACCACCACCCATCCCCGCCCTCTCACTACCGGACACTGCAGCCCTTTCCGGTGTACGCCGCTGCCGCTGCCGCTCCAGAGCATATATTTTTCTATTTCATGTACCTGCCTCGAACTGGTTGAAGGGCGTGAGAGTTGAGTTAGAAGCAACCTAGAGATAGCTATGGGAGTAGAGCAAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTCAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGCTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGACCCCTTCCTTATGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGTATCGGTGCTGGTATGCTGGTGGAGATGTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAGAGTACAAGAGTAGTTGAAGTTGGAACAAGATCGTCGTGTTGCTGGGTTTTGTTTTATTGTTAATCTTAGTTATGGAACATGTAATGTAAGTGAACATCTTTTTAATGCCTCAATGAAGTTGTACAAAAATTGGAAGCAATAATTGTAAGTTTGTTTTTTGTTTTTGTTTTTCTTTTTTAAAGCGATAAATAACCTCCAATTCAGTTA

Coding sequence (CDS)

ATGGGAGTAGAGCAAAACGACCCTTTGAAGGGAGTAGAGCAAAAAGACCCTTTCAAGGGAGTAGACTGGAAAGCTGTGGGTGGGGATATGCAGAAAGATCCCAGCTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATCCCAGATTATTATTTTCTTCCTAGAAGACCCCTTCCTTATGTCATGGCATTCTATGGGGCCTGTATTGCTGGTGGTATCGGTGCTGGTATGCTGGTGGAGATGTGGATAAATGATAAAATTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGVEQNDPLKGVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK
BLAST of MELO3C006010.2 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 104
           PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of MELO3C006010.2 vs. NCBI nr
Match: XP_004133805.1 (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_3G119440 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 2.9e-41
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 104
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of MELO3C006010.2 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 69/79 (87.34%), Postives = 76/79 (96.20%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGMLVE 84
           AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGACIAGGIGAGMLVE
Sbjct: 16  AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVE 75

Query: 85  MWINDKIKKDGGVIWEFDK 104
           +WINDK+KKDGGV+WEFDK
Sbjct: 76  IWINDKVKKDGGVVWEFDK 94

BLAST of MELO3C006010.2 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 68/79 (86.08%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGMLVE 84
           AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGACIAGGIGAGMLVE
Sbjct: 16  AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGACIAGGIGAGMLVE 75

Query: 85  MWINDKIKKDGGVIWEFDK 104
           +WI DK+KKDGGV+WEFDK
Sbjct: 76  IWIKDKVKKDGGVVWEFDK 94

BLAST of MELO3C006010.2 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 8.5e-33
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGMLVE 84
           AVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR L  V+AFYGACIAGGIGAGMLVE
Sbjct: 16  AVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFYGACIAGGIGAGMLVE 75

Query: 85  MWINDKIKKDGGVIWEFDK 104
           +WI DK+KKDGGV+WEFDK
Sbjct: 76  IWIKDKVKKDGGVVWEFDK 94

BLAST of MELO3C006010.2 vs. TAIR10
Match: AT5G16950.1 (unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 6.1e-17
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0

Query: 41  KKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWE 100
           +K+ P  +    + YFLPR+P P  +A+YG+ I GGIGAGM++E WIN K+K+DGGVIWE
Sbjct: 37  RKQIPRGLEDKYEAYFLPRKPWPRALAYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWE 96

Query: 101 FDK 104
           FDK
Sbjct: 97  FDK 99

BLAST of MELO3C006010.2 vs. TrEMBL
Match: tr|A0A1S3AV52|A0A1S3AV52_CUCME (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 7.1e-44
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 104
           PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK
Sbjct: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of MELO3C006010.2 vs. TrEMBL
Match: tr|A0A0A0L8I7|A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0

Query: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60
           MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR
Sbjct: 1   MGVEQNDPLKXXXXXXXXXXXXXXAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR 60

Query: 61  PLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 104
            LP VMAFYGACIAGGIGAGMLVE+WINDKIKKDGGVIWEFDK
Sbjct: 61  SLPSVMAFYGACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of MELO3C006010.2 vs. TrEMBL
Match: tr|B9GK55|B9GK55_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G082000v3 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.9e-29
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTN--IIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGML 84
           A+GG++QKDPS+    IIKKR P KIRQIPDYYFLPR PLP V+AFYGACIAGG+GAGML
Sbjct: 17  AIGGELQKDPSAGTKPIIKKRLPKKIRQIPDYYFLPRLPLPTVIAFYGACIAGGVGAGML 76

Query: 85  VEMWINDKIKKDGGVIWEFDK 104
           +EMWIN K+K+DGG+IWEFDK
Sbjct: 77  LEMWINKKVKEDGGIIWEFDK 97

BLAST of MELO3C006010.2 vs. TrEMBL
Match: tr|A0A067KCR1|A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 0

Query: 1   MGVEQ-NDPLKXXXXXXXXXXXXXXAVGGDMQKDPS--STNIIKKRRPTKIRQIPDYYFL 60
           MG+E+  DPLK              A+G ++QKDPS  +  IIKKR P KIRQIPDYYFL
Sbjct: 1   MGIEEPKDPLK---------GVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFL 60

Query: 61  PRRPLPYVMAFYGACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 104
           PRR LP  +AFYGACIAGGIGAGML+E+WIN K+K+DGGVIWEFDK
Sbjct: 61  PRRSLPSAIAFYGACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of MELO3C006010.2 vs. TrEMBL
Match: tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA (Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-28
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 0

Query: 25  AVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGACIAGGIGAGMLVE 84
           AVG ++QKDPSS  +IKKR P K+RQIPDYYFLPRR LP  + FYGACIAGGIGAGML+E
Sbjct: 17  AVGTELQKDPSSKPVIKKRLPKKMRQIPDYYFLPRRSLPSAIGFYGACIAGGIGAGMLLE 76

Query: 85  MWINDKIKKDGGVIWEFDK 104
           +WIN KIK+DGGVIWEFDK
Sbjct: 77  IWINKKIKEDGGVIWEFDK 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008437869.11.1e-43100.00PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo][more]
XP_004133805.12.9e-4197.09PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hy... [more]
XP_023522177.12.0e-3487.34uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo][more]
XP_022942020.11.0e-3386.08uncharacterized protein LOC111447184 [Cucurbita moschata][more]
XP_022975548.18.5e-3384.81uncharacterized protein LOC111475080 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT5G16950.16.1e-1757.14unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3AV52|A0A1S3AV52_CUCME7.1e-44100.00uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=... [more]
tr|A0A0A0L8I7|A0A0A0L8I7_CUCSA1.9e-4197.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1[more]
tr|B9GK55|B9GK55_POPTR4.9e-2976.54Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G082000v3 PE=... [more]
tr|A0A067KCR1|A0A067KCR1_JATCU1.4e-2864.15Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_12070 PE=4 SV=1[more]
tr|A0A2P5BTF0|A0A2P5BTF0_9ROSA2.4e-2877.22Krueppel-like factor OS=Trema orientalis OX=63057 GN=TorRG33x02_309280 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006010.2.1MELO3C006010.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797FAMILY NOT NAMEDcoord: 13..103

The following gene(s) are paralogous to this gene:

None