CmoCh06G010290 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G010290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr06 : 8039259 .. 8041129 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGTGCTGTGTTTAGTTTATGTTATGAATTAAGTTTTGTTTAATTTTTTGTTTTTTAGTCGTAGAATTGGACTTGGGTTGATTAAGTAAAATCTGGAAATTGGGTTAAATGTTAAAAATCTGTAATCAAATCAAAACTGAAGAATGTGCTTGAATTCTATGCTGTGAGTGAGGCAAACACTGGCGAAGAAACTCAGGATTGCCTTTCCATCCTCTGTTCAGTAGCATTGCTTTTCCGGCATTACCGTCGTTTGGTACCTTTTTCTTCCTAGTAATATTATTAAATGAACATTCTTCACTTTGCTTCCATGATCACCCTCCCAATGCTTAGACTTATTTGGAATAATCAAGGGCTTTTCTTTGGAATTTTTAGTTGGGAAGGAACAATAGAGTTCTTCCGGGAGCATATTGGTTTCTTATGGCTCTACTTTGGTGCAGATTATCCAACCCTTTTTCATACTATATAGGTTATCTTCTCTTTGATCCAGTTCGAAAGTTTTCTTGTAAATCTATTCTTTTAGCCAGGCTGAGGCTGAGGCTTTCCTATCCTTCATTTTGCACATTTCATACTTTCAGTGAATCATTTTCTTATGCAAAACAAGTAATTTGAACCTTTATTCTTTTTGGTTTTGGTTTGAAGCGTATCAGATTTGAGTTAGAGGCAATCAACAGACAGCTATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAGTAAGCTTTGAATTTGCTTTTAATAGTCTTACTTCATAATCCTAGCAATACCATTAACCTTATCCATAATTCATAGCTTTTTTATTTCCTCTGTTTTTCTTTTAGTTAAATTATCGATAGGTTTCTCAAACTTCCTTTAGAAGTGTCCGATACGATAGATATTTAAACTTTCAATCTTGTGTCCAATAGAACCTACTCGACATAAAATTGAAACTTTAAAATCATTCGTGCTTTTTAAAATTTATGATCCTACATGACATGAAATTGAAATTTTAAAGTCTTCATTCAAATTGATCAATTAGTTTATTAAATTTTCAAATATGTTAGGGACATATAAGAAACTAAATGGAAAATTCAAGAACCTACTCGATATTTCTAAAATTAAGGGACCTATTAGATACACTTTTTTATGTAAAAAAATGTCTTGAACACAAAATTGATAGTTCAATGACAAAATCTATGACTTAACATTTTCTTTTTGATGTGTATAAGAAATAGACAGTGTGATTGACTATTGAAGTTTCTTTTTCGATGTGTTCTTGCAGAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAGAGTACAGAAGTATGAAGTTGTAATAAGATCATCCAGTTCTGGGTTTTTGTTTTGTTGTCAATTCTTAGTTTTGGCACATATAAAGGAAAACATCTTTTATTGTCACTGTGAAGTTGTACAAAAATTGGAAGCAATAACCAGTAAGTTTTTCGAAGTTATGACTCCAATTCAGCTATTGGTTGTTTCTGTAGTTATAGATCAAGCACAAATGACAATAAATGCAATCATTTTTGGTATAAAGTTTATACAGATTGTTGCTTTGCTCTGGTAAAGCTGGGTTTTGGTGGATATCATGTGCTAGTAATCTTATCATGTTTCCCTGCCTAGCAACAGTTTTTTCTTCTTCTTATCAATAATATTCTC

mRNA sequence

TATGTGCTGTGTTTAGTTTATGTTATGAATTAAGTTTTGTTTAATTTTTTGTTTTTTAGTCGTAGAATTGGACTTGGGTTGATTAAGTAAAATCTGGAAATTGGGTTAAATGTTAAAAATCTGTAATCAAATCAAAACTGAAGAATGTGCTTGAATTCTATGCTGTGAGTGAGGCAAACACTGGCGAAGAAACTCAGGATTGCCTTTCCATCCTCTGTTCAGTAGCATTGCTTTTCCGGCATTACCGTCGTTTGGTACCTTTTTCTTCCTAGTAATATTATTAAATGAACATTCTTCACTTTGCTTCCATGATCACCCTCCCAATGCTTAGACTTATTTGGAATAATCAAGGGCTTTTCTTTGGAATTTTTAGTTGGGAAGGAACAATAGAGTTCTTCCGGGAGCATATTGGTTTCTTATGGCTCTACTTTGGTGCAGATTATCCAACCCTTTTTCATACTATATAGCGTATCAGATTTGAGTTAGAGGCAATCAACAGACAGCTATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAGAGTACAGAAGTATGAAGTTGTAATAAGATCATCCAGTTCTGGGTTTTTGTTTTGTTGTCAATTCTTAGTTTTGGCACATATAAAGGAAAACATCTTTTATTGTCACTGTGAAGTTGTACAAAAATTGGAAGCAATAACCAGTAAGTTTTTCGAAGTTATGACTCCAATTCAGCTATTGGTTGTTTCTGTAGTTATAGATCAAGCACAAATGACAATAAATGCAATCATTTTTGGTATAAAGTTTATACAGATTGTTGCTTTGCTCTGGTAAAGCTGGGTTTTGGTGGATATCATGTGCTAGTAATCTTATCATGTTTCCCTGCCTAGCAACAGTTTTTTCTTCTTCTTATCAATAATATTCTC

Coding sequence (CDS)

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAAGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTCCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGTGTGGTCTGGGAGTTTGACAAGTAG
BLAST of CmoCh06G010290 vs. TrEMBL
Match: A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.5e-42
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 1

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of CmoCh06G010290 vs. TrEMBL
Match: B9SBE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.6e-36
Identity = 71/94 (75.53%), Postives = 85/94 (90.43%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+   ++++KR P K+RQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          GACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of CmoCh06G010290 vs. TrEMBL
Match: A0A067JX58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 7.8e-36
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSIN--ILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+    ++KKR P KVRQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          G CIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of CmoCh06G010290 vs. TrEMBL
Match: A0A059CIH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.3e-35
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP++  I+KKR P K+RQIPEYYFLPRRSL S LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKD-GGVVWEFDK 95
          CIAGGIGAGML+EIWI  KVK+D GGVVWEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

BLAST of CmoCh06G010290 vs. TrEMBL
Match: A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-35
Identity = 71/94 (75.53%), Postives = 82/94 (87.23%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDP KGVDWKA+G ++QKDPS+    I+KKR P K+RQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          GACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of CmoCh06G010290 vs. TAIR10
Match: AT5G16950.1 (AT5G16950.1 unknown protein)

HSP 1 Score: 93.2 bits (230), Expect = 9.2e-20
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSS----INILKKRRPTKVRQIPEYYFLPRRSLPSVL 61
          +E AKDP+KG +W       +K  +S    +   +K+ P  +    E YFLPR+  P  L
Sbjct: 3  SEGAKDPWKGEEWGTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 62

Query: 62 AFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          A+YG+ I GGIGAGM++E WI  KVK+DGGV+WEFDK
Sbjct: 63 AYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

BLAST of CmoCh06G010290 vs. NCBI nr
Match: gi|449432034|ref|XP_004133805.1| (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-42
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 1

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPSV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

BLAST of CmoCh06G010290 vs. NCBI nr
Match: gi|659074925|ref|XP_008437869.1| (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-41
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 1

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGAC 63
           E KDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRR LP V+AFYGAC
Sbjct: 13  EQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
           IAGGIGAGMLVE+WI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

BLAST of CmoCh06G010290 vs. NCBI nr
Match: gi|255564645|ref|XP_002523317.1| (PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis])

HSP 1 Score: 158.3 bits (399), Expect = 6.6e-36
Identity = 71/94 (75.53%), Postives = 85/94 (90.43%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+   ++++KR P K+RQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          GACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of CmoCh06G010290 vs. NCBI nr
Match: gi|802694456|ref|XP_012083179.1| (PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSIN--ILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+    ++KKR P KVRQIP+YYFLPRRSLPS +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 95
          G CIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

BLAST of CmoCh06G010290 vs. NCBI nr
Match: gi|702327691|ref|XP_010053841.1| (PREDICTED: uncharacterized protein LOC104442188 [Eucalyptus grandis])

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-35
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP++  I+KKR P K+RQIPEYYFLPRRSL S LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKD-GGVVWEFDK 95
          CIAGGIGAGML+EIWI  KVK+D GGVVWEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L8I7_CUCSA2.5e-4289.01Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1[more]
B9SBE8_RICCO4.6e-3675.53Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1[more]
A0A067JX58_JATCU7.8e-3676.60Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1[more]
A0A059CIH1_EUCGR1.3e-3580.65Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1[more]
A0A067KCR1_JATCU5.1e-3575.53Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G16950.19.2e-2047.42 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449432034|ref|XP_004133805.1|3.6e-4289.01PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus][more]
gi|659074925|ref|XP_008437869.1|3.0e-4186.81PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo][more]
gi|255564645|ref|XP_002523317.1|6.6e-3675.53PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis][more]
gi|802694456|ref|XP_012083179.1|1.1e-3576.60PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas][more]
gi|702327691|ref|XP_010053841.1|1.9e-3580.65PREDICTED: uncharacterized protein LOC104442188 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G010290.1CmoCh06G010290.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797FAMILY NOT NAMEDcoord: 1..94
score: 6.6
NoneNo IPR availablePANTHERPTHR36797:SF1SUBFAMILY NOT NAMEDcoord: 1..94
score: 6.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G010290Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G010290Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G010290Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G010290Melon (DHL92) v3.6.1cmomedB836
CmoCh06G010290Silver-seed gourdcarcmoB0171
CmoCh06G010290Cucumber (Chinese Long) v3cmocucB0976
CmoCh06G010290Watermelon (97103) v2cmowmbB810
CmoCh06G010290Wax gourdcmowgoB1002
CmoCh06G010290Wax gourdcmowgoB1013
CmoCh06G010290Cucurbita moschata (Rifu)cmocmoB224