CmaCh00G005590 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh00G005590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionKrueppel-like factor 17
LocationCma_Chr00 : 40032189 .. 40033028 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAGGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGTTAGGCAAATTCCAGAGTATTATTTTCTTCCTAGAAGATCCCTTTCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGAGTATTATTTTCTTCCTAGAAGATCCCTTTCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAGTAAGCTTTGAATTTGTTCTTAATAGTCTTGCTTCATAATCCTACCAATATCATTAACCTTATCCAGAATTCATAGCTTTATATTGATAGGTTTCTAAAACTTTAAAAGGCCTTTAAAAGTGTCGAATAGATATTTAAACTTTCAATCTTGTGTCCAATAGAACCTACTAGACATAAAATTGAAACTTTAAAGTCTTCTTAGAAATAAAATTCAACTCTATATCTAATTGATCAATTAGTTTATTATTCAAATATAATGAAGGGACCTATTAGATACACTTTTTTATGTTAAAAAATGTCTTGGACACAAAATTGATAGTTCAACTACAAAACTTATGACACAACATTTTTTTTGTGATGTGTATGAGAGATAGACAGTGTGATTGACTATTGAAGTTTCCTTTGACACAACATTTTTTTTGTGATGTGTATGAGAGATAGACAGTGTGATTGACTATTGAAGTTTCCTTTTTGATGTGTTCTTGCAGAGGATGGAGGCGTCGTCTGGGAGTTTGACAAGTAG

mRNA sequence

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAGGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGAGTATTATTTTCTTCCTAGAAGATCCCTTTCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGCGTCGTCTGGGAGTTTGACAAGTAG

Coding sequence (CDS)

ATGGCAGAAGAGGCAAAAGACCCTTTCAAGGGAGTCGATTGGAAGGCCGTGGGTGGCGATATGCAGAAAGATCCCAGCTCTATAAACATTTTAAAGAAAAGGCGTCCAACAAAAGAGTATTATTTTCTTCCTAGAAGATCCCTTTCCTCGGTCCTTGCATTCTATGGGGCGTGTATTGCAGGTGGAATTGGAGCTGGGATGCTGGTGGAGATATGGATTAAGGATAAAGTTAAAAAGGATGGAGGCGTCGTCTGGGAGTTTGACAAGTAG

Protein sequence

MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKEYYFLPRRSLSSVLAFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK
Homology
[Close]
BLAST of CmaCh00G005590 vs. TrEMBL
Match: A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.1e-37
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK-----EYYFLPRRSLSSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK     +YYFLPRRSL SV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]
BLAST of CmaCh00G005590 vs. TrEMBL
Match: A0A059CIH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 8.5e-32
Identity = 72/93 (77.42%), Postives = 79/93 (84.95%), Query Frame = 1 

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK-----EYYFLPRRSLSSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP++  I+KKR P K     EYYFLPRRSLSS LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKD-GGVVWEFDK 90
          CIAGGIGAGML+EIWI  KVK+D GGVVWEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

[Close]
BLAST of CmaCh00G005590 vs. TrEMBL
Match: B9SBE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.3e-31
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTK-----EYYFLPRRSLSSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+   ++++KR P K     +YYFLPRRSL S +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
          GACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]
BLAST of CmaCh00G005590 vs. TrEMBL
Match: A0A067JX58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.1e-30
Identity = 66/94 (70.21%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSIN--ILKKRRPTK-----EYYFLPRRSLSSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+    ++KKR P K     +YYFLPRRSL S +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
          G CIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]
BLAST of CmaCh00G005590 vs. TrEMBL
Match: A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-29
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTK-----EYYFLPRRSLSSVLAFY 62
          EE KDP KGVDWKA+G ++QKDPS+    I+KKR P K     +YYFLPRRSL S +AFY
Sbjct: 4  EEPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
          GACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]
BLAST of CmaCh00G005590 vs. TAIR10
Match: AT5G16950.1 (AT5G16950.1 unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 3.6e-18
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK----------EYYFLPRRSLSSV 61
          +E AKDP+KG +W     +  K P++  +    R  K          E YFLPR+     
Sbjct: 3  SEGAKDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRA 62

Query: 62 LAFYGACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
          LA+YG+ I GGIGAGM++E WI  KVK+DGGV+WEFDK
Sbjct: 63 LAYYGSFILGGIGAGMVIEAWINKKVKEDGGVIWEFDK 99

[Close]
BLAST of CmaCh00G005590 vs. NCBI nr
Match: gi|449432034|ref|XP_004133805.1| (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 7.3e-37
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 1 

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK-----EYYFLPRRSLSSVLAFYGAC 63
           E KDP KGVDWKAVGGDMQKDPSS NI+KKRRPTK     +YYFLPRRSL SV+AFYGAC
Sbjct: 13  EQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
           IAGGIGAGMLVEIWI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]
BLAST of CmaCh00G005590 vs. NCBI nr
Match: gi|659074925|ref|XP_008437869.1| (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 6.2e-36
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 1 

Query: 4   EAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK-----EYYFLPRRSLSSVLAFYGAC 63
           E KDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK     +YYFLPRR L  V+AFYGAC
Sbjct: 13  EQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYGAC 72

Query: 64  IAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
           IAGGIGAGMLVE+WI DK+KKDGGV+WEFDK
Sbjct: 73  IAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]
BLAST of CmaCh00G005590 vs. NCBI nr
Match: gi|702327691|ref|XP_010053841.1| (PREDICTED: uncharacterized protein LOC104442188 [Eucalyptus grandis])

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 72/93 (77.42%), Postives = 79/93 (84.95%), Query Frame = 1 

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK-----EYYFLPRRSLSSVLAFYGA 62
          EE+KDPFKGVDWKAVG D+QKDP++  I+KKR P K     EYYFLPRRSLSS LAFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWIKDKVKKD-GGVVWEFDK 90
          CIAGGIGAGML+EIWI  KVK+D GGVVWEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

[Close]
BLAST of CmaCh00G005590 vs. NCBI nr
Match: gi|255564645|ref|XP_002523317.1| (PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-30
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSS--INILKKRRPTK-----EYYFLPRRSLSSVLAFY 62
          EE KDPFKGVDWKA+GG++QKDPS+   ++++KR P K     +YYFLPRRSL S +AFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
          GACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]
BLAST of CmaCh00G005590 vs. NCBI nr
Match: gi|1009116960|ref|XP_015875058.1| (PREDICTED: uncharacterized protein LOC107411898 [Ziziphus jujuba])

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 67/93 (72.04%), Postives = 76/93 (81.72%), Query Frame = 1 

Query: 2  AEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTK-----EYYFLPRRSLSSVLAFYG 61
          +EE KDP KGVDWKAVG D+QKDP S  +++KR P K     +YYFLPRRSLS  LAFYG
Sbjct: 3  SEETKDPLKGVDWKAVGTDLQKDPGSKPVIRKRLPKKIRQIPDYYFLPRRSLSYNLAFYG 62

Query: 62 ACIAGGIGAGMLVEIWIKDKVKKDGGVVWEFDK 90
          ACIAGGIGAGML+EIWI  KVK+DGGV+WEFDK
Sbjct: 63 ACIAGGIGAGMLLEIWIDKKVKEDGGVIWEFDK 95

The following BLAST results are available for this feature:
BLAST of CmaCh00G005590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh00G005590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8I7_CUCSA5.1e-3783.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1[more]
A0A059CIH1_EUCGR8.5e-3277.42Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1[more]
B9SBE8_RICCO9.3e-3170.21Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1[more]
A0A067JX58_JATCU2.1e-3070.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1[more]
A0A067KCR1_JATCU1.0e-2970.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1[more]
BLAST of CmaCh00G005590 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G16950.13.6e-1845.92 unknown protein[more]
BLAST of CmaCh00G005590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432034|ref|XP_004133805.1|7.3e-3783.52PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus][more]
gi|659074925|ref|XP_008437869.1|6.2e-3681.32PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo][more]
gi|702327691|ref|XP_010053841.1|1.2e-3177.42PREDICTED: uncharacterized protein LOC104442188 [Eucalyptus grandis][more]
gi|255564645|ref|XP_002523317.1|1.3e-3070.21PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis][more]
gi|1009116960|ref|XP_015875058.1|1.8e-3072.04PREDICTED: uncharacterized protein LOC107411898 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G005590.1CmaCh00G005590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36797FAMILY NOT NAMEDcoord: 1..89
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh00G005590MELO3C006010Melon (DHL92) v3.5.1cmameB009
CmaCh00G005590ClCG05G000700Watermelon (Charleston Gray)cmawcgB006
CmaCh00G005590CmoCh06G010290Cucurbita moschata (Rifu)cmacmoB026
CmaCh00G005590Cp4.1LG08g00710Cucurbita pepo (Zucchini)cmacpeB014
CmaCh00G005590Cla97C05G080810Watermelon (97103) v2cmawmbB012
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh00G005590CmaCh06G009750Cucurbita maxima (Rimu)cmacmaB023
The following block(s) are covering this gene:

None