Cla021142 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021142
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 739308 .. 739865 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAAAGTAAGTTCTGAATATGGGTCTAGATTTTTTCAATTACTGTTTGATTTCACACTTTTAAACACGATTTGAATAACCATGAAATTTTATTTTAAAAGATTAAAAGCTTTTGAAAGTGACAAAAGTAATTTTAACTATTTTAAGCTTAACGTCTGCGTAAGCCTGCCAATTTCTACCAATTTCTTTTTTGATATCTCTCTGCTTTTCTTTTTAATGTATATCTATGAGAGATAAGATTGATTGATTTTTAATTTTCCTTCCTGATGTGTTCTTAAGAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

mRNA sequence

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Coding sequence (CDS)

ATGGGAGAAGAGCAAAAAGACCCTTTTAAGGGAGTGGACTGGAAAGCCGTGGGTGGGGATATGCAGAAAAATCCCAGCGCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATTAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCTTCTGCCATTGCATTCTATGGGGCCTGTATTGCAGGTGGAATTGGTGCTGGTATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAAAAGGATGGAGGTGTCATCTGGGAGTTTGACAAGTAG

Protein sequence

MGEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYGACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK

Homology

[Close]

BLAST of Cla021142 vs. TrEMBL
Match: A0A0A0L8I7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-44
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11  GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVEIWINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Cla021142 vs. TrEMBL
Match: B9SBE8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-39
Identity = 78/94 (82.98%), Postives = 87/94 (92.55%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSA--TNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 62
          EE KDPFKGVDWKA+GG++QK+PSA   ++I+KR P KIRQIPDYYFLPRRSLPSAIAFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGVIWEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cla021142 vs. TrEMBL
Match: A0A067JX58_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.2e-38
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSATN--IIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 62
          EE KDPFKGVDWKA+GG++QK+PSA+   +IKKR P K+RQIPDYYFLPRRSLPSAIAFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          G CIAGGIGAGML+EIWIN KVK+DGGVIWEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cla021142 vs. TrEMBL
Match: A0A067KCR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSA--TNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 62
          EE KDP KGVDWKA+G ++QK+PSA    IIKKR P KIRQIPDYYFLPRRSLPSAIAFY
Sbjct: 4  EEPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGVIWEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cla021142 vs. TrEMBL
Match: A0A059CIH1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.5e-36
Identity = 74/93 (79.57%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYGA 62
          EE KDPFKGVDWKAVG D+QK+P+A  I+KKR P KIRQIP+YYFLPRRSL S +AFYGA
Sbjct: 4  EESKDPFKGVDWKAVGSDIQKDPAAKPIVKKRLPKKIRQIPEYYFLPRRSLSSTLAFYGA 63

Query: 63 CIAGGIGAGMLVEIWINDKVKKD-GGVIWEFDK 95
          CIAGGIGAGML+EIWIN KVK+D GGV+WEFDK
Sbjct: 64 CIAGGIGAGMLLEIWINKKVKEDGGGVVWEFDK 96

[Close]

BLAST of Cla021142 vs. NCBI nr
Match: gi|449432034|ref|XP_004133805.1| (PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-44
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 1


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDP KGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11  GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVEIWINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEIWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Cla021142 vs. NCBI nr
Match: gi|659074925|ref|XP_008437869.1| (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 84/93 (90.32%), Postives = 89/93 (95.70%), Query Frame = 1


Query: 2   GEEQKDPFKGVDWKAVGGDMQKNPSATNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
           G EQKDPFKGVDWKAVGGDMQK+PS+TNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11  GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62  ACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
           ACIAGGIGAGMLVE+WINDK+KKDGGVIWEFDK
Sbjct: 71  ACIAGGIGAGMLVEMWINDKIKKDGGVIWEFDK 103

[Close]

BLAST of Cla021142 vs. NCBI nr
Match: gi|255564645|ref|XP_002523317.1| (PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 78/94 (82.98%), Postives = 87/94 (92.55%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSA--TNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 62
          EE KDPFKGVDWKA+GG++QK+PSA   ++I+KR P KIRQIPDYYFLPRRSLPSAIAFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSAGAKSVIRKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGVIWEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cla021142 vs. NCBI nr
Match: gi|802694456|ref|XP_012083179.1| (PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas])

HSP 1 Score: 166.0 bits (419), Expect = 3.1e-38
Identity = 77/94 (81.91%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSATN--IIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 62
          EE KDPFKGVDWKA+GG++QK+PSA+   +IKKR P K+RQIPDYYFLPRRSLPSAIAFY
Sbjct: 4  EEPKDPFKGVDWKAIGGELQKDPSASAKPVIKKRLPKKVRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          G CIAGGIGAGML+EIWIN KVK+DGGVIWEFDK
Sbjct: 64 GGCIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

[Close]

BLAST of Cla021142 vs. NCBI nr
Match: gi|802635256|ref|XP_012078200.1| (PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas])

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37
Identity = 78/94 (82.98%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 3  EEQKDPFKGVDWKAVGGDMQKNPSA--TNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 62
          EE KDP KGVDWKA+G ++QK+PSA    IIKKR P KIRQIPDYYFLPRRSLPSAIAFY
Sbjct: 4  EEPKDPLKGVDWKAIGSELQKDPSAGAKQIIKKRLPKKIRQIPDYYFLPRRSLPSAIAFY 63

Query: 63 GACIAGGIGAGMLVEIWINDKVKKDGGVIWEFDK 95
          GACIAGGIGAGML+EIWIN KVK+DGGVIWEFDK
Sbjct: 64 GACIAGGIGAGMLLEIWINKKVKEDGGVIWEFDK 97

The following BLAST results are available for this feature:

BLAST of Cla021142 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8I7_CUCSA	1.2e-44	92.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119440 PE=4 SV=1	[more]
B9SBE8_RICCO	9.9e-39	82.98	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0716680 PE=4 SV=1	[more]
A0A067JX58_JATCU	2.2e-38	81.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14238 PE=4 SV=1	[more]
A0A067KCR1_JATCU	1.1e-37	82.98	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12070 PE=4 SV=1	[more]
A0A059CIH1_EUCGR	3.5e-36	79.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02385 PE=4 SV=1	[more]

BLAST of Cla021142 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432034\|ref\|XP_004133805.1\|	1.7e-44	92.47	PREDICTED: uncharacterized protein LOC101207877 [Cucumis sativus]	[more]
gi\|659074925\|ref\|XP_008437869.1\|	1.5e-43	90.32	PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo]	[more]
gi\|255564645\|ref\|XP_002523317.1\|	1.4e-38	82.98	PREDICTED: uncharacterized protein LOC8263493 [Ricinus communis]	[more]
gi\|802694456\|ref\|XP_012083179.1\|	3.1e-38	81.91	PREDICTED: uncharacterized protein LOC105642827 [Jatropha curcas]	[more]
gi\|802635256\|ref\|XP_012078200.1\|	1.6e-37	82.98	PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU31842	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU59949	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021142	Cla021142.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31842	WMU31842	transcribed_cluster
WMU59949	WMU59949	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36797	FAMILY NOT NAMED	coord: 1..94 score: 3.4
None	No IPR available	PANTHER	PTHR36797:SF1	SUBFAMILY NOT NAMED	coord: 1..94 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021142	Cla97C05G080810	Watermelon (97103) v2	wmwmbB206
Cla021142	Csa3G119440	Cucumber (Chinese Long) v2	cuwmB233
Cla021142	MELO3C006010	Melon (DHL92) v3.5.1	mewmB461
Cla021142	ClCG05G000700	Watermelon (Charleston Gray)	wcgwmB286
Cla021142	CSPI03G07800	Wild cucumber (PI 183967)	cpiwmB231
Cla021142	Cucsa.259360	Cucumber (Gy14) v1	cgywmB479
Cla021142	CmaCh06G009750	Cucurbita maxima (Rimu)	cmawmB803
Cla021142	CmoCh06G010290	Cucurbita moschata (Rifu)	cmowmB793
Cla021142	Lsi05G021360	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021142	Cp4.1LG08g00710	Cucurbita pepo (Zucchini)	cpewmB845
Cla021142	CsGy3G007950	Cucumber (Gy14) v2	cgybwmB217
Cla021142	MELO3C006010.2	Melon (DHL92) v3.6.1	medwmB447
Cla021142	Carg20905	Silver-seed gourd	carwmB0992
Cla021142	CsaV3_3G007920	Cucumber (Chinese Long) v3	cucwmB239

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021142	Cucumber (Chinese Long) v3	cucwmB423
Cla021142	Watermelon (97103) v2	wmwmbB187
Cla021142	Wax gourd	wgowmB071
Cla021142	Wax gourd	wgowmB212
Cla021142	Watermelon (97103) v1	wmwmB118
Cla021142	Watermelon (97103) v1	wmwmB119
Cla021142	Cucumber (Gy14) v1	cgywmB398
Cla021142	Cucurbita maxima (Rimu)	cmawmB242
Cla021142	Cucurbita maxima (Rimu)	cmawmB799
Cla021142	Cucurbita moschata (Rifu)	cmowmB231
Cla021142	Melon (DHL92) v3.5.1	mewmB022
Cla021142	Melon (DHL92) v3.5.1	mewmB470
Cla021142	Watermelon (Charleston Gray)	wcgwmB130
Cla021142	Watermelon (Charleston Gray)	wcgwmB291
Cla021142	Cucumber (Chinese Long) v2	cuwmB397
Cla021142	Cucurbita pepo (Zucchini)	cpewmB613
Cla021142	Cucurbita pepo (Zucchini)	cpewmB704
Cla021142	Bottle gourd (USVL1VR-Ls)	lsiwmB018
Cla021142	Cucumber (Gy14) v2	cgybwmB373
Cla021142	Melon (DHL92) v3.6.1	medwmB018
Cla021142	Silver-seed gourd	carwmB0122