CmaCh18G006150 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh18G006150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_12
LocationCma_Chr18 : 5435118 .. 5435414 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

mRNA sequence

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ
Homology
[Close]
BLAST of CmaCh18G006150 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of CmaCh18G006150 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-18
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]
BLAST of CmaCh18G006150 vs. TrEMBL
Match: A0A151T6F9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+    S+  SL +YAAPRFL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          +  +E HGE+AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]
BLAST of CmaCh18G006150 vs. TrEMBL
Match: D7T5G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQTK++Q++    +   VS++++L    APRFL+ILA+FWPLF+STAVLL+ M  FG   
Sbjct: 3  IQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPE 90
             TE+HGE+ GE +LDYVAGRPE
Sbjct: 63 PPSTEIHGEKTGEGLLDYVAGRPE 86

[Close]
BLAST of CmaCh18G006150 vs. TrEMBL
Match: I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+   VS+  SLF+YAAP FL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          ++  E HGE+AGE +LDYVA R E+ +
Sbjct: 63 KLSNEDHGEKAGEGLLDYVAERTEHTQ 89

[Close]
BLAST of CmaCh18G006150 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1 

Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLF STA  L AM    GGF
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFL-AMAITFGGF 183

Query: 66  QVGTEVHGERAGERILDYVAGRPE 90
           Q   ++  E  GER++DYVAGRPE
Sbjct: 184 Q---QLSEEATGERLMDYVAGRPE 203

[Close]
BLAST of CmaCh18G006150 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.0e-06
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 9  KVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQV- 68
          K+L+ K Q+     +S++    V  +P FL++L++FWPLFLSTA+ L A+  F     + 
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 --GTEVHGERAG-----ERILDYVAG 87
             T + GE AG     E ILDYV G
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]
BLAST of CmaCh18G006150 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of CmaCh18G006150 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of CmaCh18G006150 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-18
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]
BLAST of CmaCh18G006150 vs. NCBI nr
Match: gi|1012351459|gb|KYP62648.1| (hypothetical protein KK1_017189 [Cajanus cajan])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+    S+  SL +YAAPRFL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          +  +E HGE+AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]
BLAST of CmaCh18G006150 vs. NCBI nr
Match: gi|297736712|emb|CBI25748.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQTK++Q++    +   VS++++L    APRFL+ILA+FWPLF+STAVLL+ M  FG   
Sbjct: 3  IQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPE 90
             TE+HGE+ GE +LDYVAGRPE
Sbjct: 63 PPSTEIHGEKTGEGLLDYVAGRPE 86

The following BLAST results are available for this feature:
BLAST of CmaCh18G006150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh18G006150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYI8_CUCSA1.7e-3386.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1[more]
A0A061GGG1_THECC4.5e-1851.61Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1[more]
A0A151T6F9_CAJCA1.9e-1655.17Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1[more]
D7T5G5_VITVI2.5e-1654.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=... [more]
I1MFR0_SOYBN3.2e-1655.17Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1[more]
BLAST of CmaCh18G006150 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16400.11.6e-1452.38 unknown protein[more]
AT3G13175.16.0e-0639.53 unknown protein[more]
BLAST of CmaCh18G006150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209900|gb|KGN64996.1|2.4e-3386.02hypothetical protein Csa_1G173160 [Cucumis sativus][more]
gi|659128598|ref|XP_008464280.1|5.4e-3383.87PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo][more]
gi|590627047|ref|XP_007026343.1|6.4e-1851.61Uncharacterized protein TCM_030419 [Theobroma cacao][more]
gi|1012351459|gb|KYP62648.1|2.7e-1655.17hypothetical protein KK1_017189 [Cajanus cajan][more]
gi|297736712|emb|CBI25748.3|3.5e-1654.76unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G006150.1CmaCh18G006150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34125FAMILY NOT NAMEDcoord: 6..89
score: 7.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh18G006150Cucsa.319360Cucumber (Gy14) v1cgycmaB0884
CmaCh18G006150Cla010973Watermelon (97103) v1cmawmB386
CmaCh18G006150Csa1G173160Cucumber (Chinese Long) v2cmacuB399
CmaCh18G006150MELO3C026073Melon (DHL92) v3.5.1cmameB367
CmaCh18G006150ClCG01G010960Watermelon (Charleston Gray)cmawcgB341
CmaCh18G006150CSPI01G15350Wild cucumber (PI 183967)cmacpiB403
CmaCh18G006150CmoCh18G005770Cucurbita moschata (Rifu)cmacmoB411
CmaCh18G006150CmoCh13G003950Cucurbita moschata (Rifu)cmacmoB398
CmaCh18G006150Lsi02G011570Bottle gourd (USVL1VR-Ls)cmalsiB369
CmaCh18G006150Cp4.1LG09g06440Cucurbita pepo (Zucchini)cmacpeB415
CmaCh18G006150MELO3C026073.2Melon (DHL92) v3.6.1cmamedB426
CmaCh18G006150CsaV3_1G015520Cucumber (Chinese Long) v3cmacucB0468
CmaCh18G006150Cla97C01G010690Watermelon (97103) v2cmawmbB394
CmaCh18G006150CsGy1G015110Cucumber (Gy14) v2cgybcmaB095
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G006150Watermelon (97103) v2cmawmbB402
CmaCh18G006150Wax gourdcmawgoB0515
CmaCh18G006150Wax gourdcmawgoB0535
CmaCh18G006150Cucurbita maxima (Rimu)cmacmaB211
CmaCh18G006150Cucurbita maxima (Rimu)cmacmaB216
CmaCh18G006150Cucurbita maxima (Rimu)cmacmaB399
CmaCh18G006150Cucumber (Gy14) v1cgycmaB0040
CmaCh18G006150Cucumber (Gy14) v1cgycmaB0514
CmaCh18G006150Cucurbita moschata (Rifu)cmacmoB395
CmaCh18G006150Cucurbita moschata (Rifu)cmacmoB407
CmaCh18G006150Cucurbita moschata (Rifu)cmacmoB419
CmaCh18G006150Cucurbita moschata (Rifu)cmacmoB428
CmaCh18G006150Wild cucumber (PI 183967)cmacpiB428
CmaCh18G006150Wild cucumber (PI 183967)cmacpiB399
CmaCh18G006150Cucumber (Chinese Long) v2cmacuB395
CmaCh18G006150Cucumber (Chinese Long) v2cmacuB425
CmaCh18G006150Melon (DHL92) v3.5.1cmameB361
CmaCh18G006150Watermelon (Charleston Gray)cmawcgB349
CmaCh18G006150Watermelon (97103) v1cmawmB389
CmaCh18G006150Cucurbita pepo (Zucchini)cmacpeB413
CmaCh18G006150Cucurbita pepo (Zucchini)cmacpeB419
CmaCh18G006150Cucurbita pepo (Zucchini)cmacpeB438
CmaCh18G006150Bottle gourd (USVL1VR-Ls)cmalsiB367
CmaCh18G006150Cucumber (Gy14) v2cgybcmaB089
CmaCh18G006150Cucumber (Gy14) v2cgybcmaB771
CmaCh18G006150Melon (DHL92) v3.6.1cmamedB414
CmaCh18G006150Melon (DHL92) v3.6.1cmamedB421
CmaCh18G006150Silver-seed gourdcarcmaB0060
CmaCh18G006150Silver-seed gourdcarcmaB0562
CmaCh18G006150Silver-seed gourdcarcmaB0907
CmaCh18G006150Cucumber (Chinese Long) v3cmacucB0476
CmaCh18G006150Cucumber (Chinese Long) v3cmacucB0509