Cp4.1LG09g06440 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g06440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaC07g33630D protein
LocationCp4.1LG09 : 4852057 .. 4852353 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

mRNA sequence

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAGGTCATTCAAACAAAGGTTCTCCAACACAAAGACCAGCTAACTGTTGTAGCAGCAGTTTCAGTGGTTATGTCATTGTTCGTATATGCAGCGCCCCGGTTTCTAAGTATTCTAGCATTCTTTTGGCCTCTCTTTCTCTCCACAGCCGTACTTTTGGTGGCAATGACAGCCTTTGGAGGAGGTTTCCAAGTTGGAACCGAAGTTCATGGTGAGAGAGCAGGTGAAAGGATCCTAGATTATGTAGCAGGACGGCCTGAATACGCCGAATACCAATACAAGTACCAATAA

Protein sequence

MDIQVIQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ
Homology
[Close]
BLAST of Cp4.1LG09g06440 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of Cp4.1LG09g06440 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-18
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]
BLAST of Cp4.1LG09g06440 vs. TrEMBL
Match: A0A151T6F9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+    S+  SL +YAAPRFL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          +  +E HGE+AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]
BLAST of Cp4.1LG09g06440 vs. TrEMBL
Match: D7T5G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQTK++Q++    +   VS++++L    APRFL+ILA+FWPLF+STAVLL+ M  FG   
Sbjct: 3  IQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPE 90
             TE+HGE+ GE +LDYVAGRPE
Sbjct: 63 PPSTEIHGEKTGEGLLDYVAGRPE 86

[Close]
BLAST of Cp4.1LG09g06440 vs. TrEMBL
Match: I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+   VS+  SLF+YAAP FL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          ++  E HGE+AGE +LDYVA R E+ +
Sbjct: 63 KLSNEDHGEKAGEGLLDYVAERTEHTQ 89

[Close]
BLAST of Cp4.1LG09g06440 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 1 

Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLF STA  L AM    GGF
Sbjct: 124 IQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFL-AMAITFGGF 183

Query: 66  QVGTEVHGERAGERILDYVAGRPE 90
           Q   ++  E  GER++DYVAGRPE
Sbjct: 184 Q---QLSEEATGERLMDYVAGRPE 203

[Close]
BLAST of Cp4.1LG09g06440 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.0e-06
Identity = 34/86 (39.53%), Postives = 49/86 (56.98%), Query Frame = 1 

Query: 9  KVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGFQV- 68
          K+L+ K Q+     +S++    V  +P FL++L++FWPLFLSTA+ L A+  F     + 
Sbjct: 6  KLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLP 65

Query: 69 --GTEVHGERAG-----ERILDYVAG 87
             T + GE AG     E ILDYV G
Sbjct: 66 VSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]
BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 80/93 (86.02%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  KVLQHKDQLTVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 3  IHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.4e-33
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQ K+LQHKDQ+TVVAAVSVV+SLFVY APRFLSILAFFWPLF STAVLLV MTAFGGGF
Sbjct: 3  IQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGF 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
          QVG+E+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 63 QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-18
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 6   IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
           IQ K++Q++   T+    S +++  +Y APR L+IL +FWPLF ST V LVA+ AFGGG 
Sbjct: 92  IQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGS 151

Query: 66  QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 99
           Q+ TEVHGE+AG+ ++DYVA RPE+AE   K++
Sbjct: 152 QLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]
BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: gi|1012351459|gb|KYP62648.1| (hypothetical protein KK1_017189 [Cajanus cajan])

HSP 1 Score: 93.2 bits (230), Expect = 2.7e-16
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          I  K+LQ++  +T+    S+  SL +YAAPRFL+ILA+FWPLF ST V LVA+ AFGG  
Sbjct: 3  ISEKLLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPEYAE 93
          +  +E HGE+AGE +LDYVAGR E+ +
Sbjct: 63 RFSSEDHGEKAGEGLLDYVAGRTEHTQ 89

[Close]
BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match: gi|297736712|emb|CBI25748.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-16
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 1 

Query: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65
          IQTK++Q++    +   VS++++L    APRFL+ILA+FWPLF+STAVLL+ M  FG   
Sbjct: 3  IQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQLS 62

Query: 66 QVGTEVHGERAGERILDYVAGRPE 90
             TE+HGE+ GE +LDYVAGRPE
Sbjct: 63 PPSTEIHGEKTGEGLLDYVAGRPE 86

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g06440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g06440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYI8_CUCSA1.7e-3386.02Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1[more]
A0A061GGG1_THECC4.5e-1851.61Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1[more]
A0A151T6F9_CAJCA1.9e-1655.17Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1[more]
D7T5G5_VITVI2.5e-1654.76Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=... [more]
I1MFR0_SOYBN3.2e-1655.17Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1[more]
BLAST of Cp4.1LG09g06440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16400.11.6e-1452.38 unknown protein[more]
AT3G13175.16.0e-0639.53 unknown protein[more]
BLAST of Cp4.1LG09g06440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209900|gb|KGN64996.1|2.4e-3386.02hypothetical protein Csa_1G173160 [Cucumis sativus][more]
gi|659128598|ref|XP_008464280.1|5.4e-3383.87PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo][more]
gi|590627047|ref|XP_007026343.1|6.4e-1851.61Uncharacterized protein TCM_030419 [Theobroma cacao][more]
gi|1012351459|gb|KYP62648.1|2.7e-1655.17hypothetical protein KK1_017189 [Cajanus cajan][more]
gi|297736712|emb|CBI25748.3|3.5e-1654.76unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g06440.1Cp4.1LG09g06440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34125FAMILY NOT NAMEDcoord: 6..89
score: 7.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g06440Cucsa.319360Cucumber (Gy14) v1cgycpeB0840
Cp4.1LG09g06440CmaCh18G006150Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g06440CmoCh18G005770Cucurbita moschata (Rifu)cmocpeB375
Cp4.1LG09g06440Cla010973Watermelon (97103) v1cpewmB046
Cp4.1LG09g06440MELO3C026073Melon (DHL92) v3.5.1cpemeB032
Cp4.1LG09g06440ClCG01G010960Watermelon (Charleston Gray)cpewcgB025
Cp4.1LG09g06440Lsi02G011570Bottle gourd (USVL1VR-Ls)cpelsiB027
Cp4.1LG09g06440CsaV3_1G015520Cucumber (Chinese Long) v3cpecucB0021
Cp4.1LG09g06440Carg25601Silver-seed gourdcarcpeB0065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g06440Wax gourdcpewgoB0042
Cp4.1LG09g06440Cucurbita pepo (Zucchini)cpecpeB048
Cp4.1LG09g06440Cucumber (Gy14) v1cgycpeB0841
Cp4.1LG09g06440Cucurbita maxima (Rimu)cmacpeB212
Cp4.1LG09g06440Cucurbita moschata (Rifu)cmocpeB182
Cp4.1LG09g06440Wild cucumber (PI 183967)cpecpiB017
Cp4.1LG09g06440Cucumber (Chinese Long) v2cpecuB020
Cp4.1LG09g06440Melon (DHL92) v3.5.1cpemeB028
Cp4.1LG09g06440Cucumber (Gy14) v2cgybcpeB007
Cp4.1LG09g06440Melon (DHL92) v3.6.1cpemedB033