ClCG01G010960 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G010960
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	UPA24
Location	CG_Chr01 : 17184186 .. 17184473 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCTCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGCAATGGTCGCCTTTGGAGGCGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGGGAAAACCATTATAAGTACCAATAA

mRNA sequence

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCTCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGCAATGGTCGCCTTTGGAGGCGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGGGAAAACCATTATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCTCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGCAATGGTCGCCTTTGGAGGCGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGGGAAAACCATTATAAGTACCAATAA

Protein sequence

MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGGGFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ

Homology

[Close]

BLAST of ClCG01G010960 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-42
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLV M AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVGTE+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of ClCG01G010960 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-23
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
           MDIQ K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LVA++AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
           G Q+ TEVHG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of ClCG01G010960 vs. TrEMBL
Match: A0A0B2S7V4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015170 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of ClCG01G010960 vs. TrEMBL
Match: I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SLF+YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            ++  E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

[Close]

BLAST of ClCG01G010960 vs. TrEMBL
Match: I1L024_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-21
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of ClCG01G010960 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-18
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
           M+IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L   + FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPE 87
             Q+  E      GE ++DYVAGRPE
Sbjct: 182 FQQLSEEA----TGERLMDYVAGRPE 203

[Close]

BLAST of ClCG01G010960 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-09
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          M+ + K+L+ K QI     +S++    V  +P FL++L++FWPLF STA+ L A+  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEVHGVRAG-----EGILDYVAG 84
             +    T + G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of ClCG01G010960 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-41
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLV M AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVGTE+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of ClCG01G010960 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-41
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDIQ K+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLV M AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVG+E+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of ClCG01G010960 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 115.5 bits (288), Expect = 4.9e-23
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 1


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
           MDIQ K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LVA++AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
           G Q+ TEVHG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of ClCG01G010960 vs. NCBI nr
Match: gi|734420416|gb|KHN40803.1| (hypothetical protein glysoja_015170 [Glycine soja])

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-21
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of ClCG01G010960 vs. NCBI nr
Match: gi|947062314|gb|KRH11575.1| (hypothetical protein GLYMA_15G117900 [Glycine max])

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-21
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SLF+YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            ++  E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

The following BLAST results are available for this feature:

BLAST of ClCG01G010960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	9.6e-42	91.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	3.4e-23	52.63	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
A0A0B2S7V4_GLYSO	4.2e-21	60.47	Uncharacterized protein OS=Glycine soja GN=glysoja_015170 PE=4 SV=1	[more]
I1MFR0_SOYBN	4.2e-21	59.77	Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1	[more]
I1L024_SOYBN	4.2e-21	60.47	Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1	[more]

BLAST of ClCG01G010960 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	6.6e-18	50.00	unknown protein	[more]
AT3G13175.1	7.3e-09	38.46	unknown protein	[more]

BLAST of ClCG01G010960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209900\|gb\|KGN64996.1\|	1.4e-41	91.58	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|659128598\|ref\|XP_008464280.1\|	1.8e-41	90.53	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	4.9e-23	52.63	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|734420416\|gb\|KHN40803.1\|	6.0e-21	60.47	hypothetical protein glysoja_015170 [Glycine soja]	[more]
gi\|947062314\|gb\|KRH11575.1\|	6.0e-21	59.77	hypothetical protein GLYMA_15G117900 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G010960.1	ClCG01G010960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..86 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G010960	Csa1G173160	Cucumber (Chinese Long) v2	cuwcgB022
ClCG01G010960	MELO3C026073	Melon (DHL92) v3.5.1	mewcgB143
ClCG01G010960	Cla010973	Watermelon (97103) v1	wcgwmB155
ClCG01G010960	Cla97C01G010690	Watermelon (97103) v2	wcgwmbB089
ClCG01G010960	CSPI01G15350	Wild cucumber (PI 183967)	cpiwcgB025
ClCG01G010960	Cucsa.319360	Cucumber (Gy14) v1	cgywcgB552
ClCG01G010960	CmaCh18G006150	Cucurbita maxima (Rimu)	cmawcgB341
ClCG01G010960	CmoCh13G003950	Cucurbita moschata (Rifu)	cmowcgB175
ClCG01G010960	CmoCh18G005770	Cucurbita moschata (Rifu)	cmowcgB342
ClCG01G010960	Lsi02G011570	Bottle gourd (USVL1VR-Ls)	lsiwcgB169
ClCG01G010960	Cp4.1LG09g06440	Cucurbita pepo (Zucchini)	cpewcgB025
ClCG01G010960	CsGy1G015110	Cucumber (Gy14) v2	cgybwcgB021
ClCG01G010960	MELO3C026073.2	Melon (DHL92) v3.6.1	medwcgB135
ClCG01G010960	CsaV3_1G015520	Cucumber (Chinese Long) v3	cucwcgB024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G010960	Cucumber (Gy14) v1	cgywcgB321
ClCG01G010960	Cucurbita moschata (Rifu)	cmowcgB042
ClCG01G010960	Cucurbita moschata (Rifu)	cmowcgB345
ClCG01G010960	Melon (DHL92) v3.5.1	mewcgB137
ClCG01G010960	Cucurbita pepo (Zucchini)	cpewcgB007
ClCG01G010960	Cucurbita pepo (Zucchini)	cpewcgB317
ClCG01G010960	Bottle gourd (USVL1VR-Ls)	lsiwcgB174
ClCG01G010960	Melon (DHL92) v3.6.1	medwcgB126
ClCG01G010960	Silver-seed gourd	carwcgB0053
ClCG01G010960	Silver-seed gourd	carwcgB0720
ClCG01G010960	Wax gourd	wcgwgoB241