CSPI01G15350 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15350
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BnaC07g33630D protein
Location	Chr1 : 10945632 .. 10946220 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATAGCAAGTTCCTTTTTCTCTATATATTTCTCTCATTCTCCTTCTCCATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTTAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAACAGATTATTTCTCACGATCAAATTTAAAAAACTTACACTCAAAATTTCTGCTTGTTCATTTTGTATATTCAAACTACCGATGAGTTAGTTCAGTGGAATAACACATGGATGCTCAATGCAAAAAATGGTTTGTAAATTGAATGTAATTCTTCAAATATTTTGTTTGAATCCTAATAGGTAAGTTCGTAACGATATTTGGAATCAATGGTCACTTAAAAGGTAACCATGAAAATGAAATTTATAGTATCTAC

mRNA sequence

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTTAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTTAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTCGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Homology

[Close]

BLAST of CSPI01G15350 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-44
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CSPI01G15350 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-19
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 1   MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           MDI  K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ TE+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of CSPI01G15350 vs. TrEMBL
Match: B9HD48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-18
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  ++LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of CSPI01G15350 vs. TrEMBL
Match: I1L024_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-18
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of CSPI01G15350 vs. TrEMBL
Match: A0A0B2S7V4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_015170 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.5e-18
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of CSPI01G15350 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1


Query: 1   MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           M+I AK+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

[Close]

BLAST of CSPI01G15350 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          M+   K+L+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEIHGMRAG-----EGILDYVAG 84
             +    T I G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of CSPI01G15350 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-44
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CSPI01G15350 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-41
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI AK+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CSPI01G15350 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-19
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 1


Query: 1   MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           MDI  K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ TE+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of CSPI01G15350 vs. NCBI nr
Match: gi|224089775|ref|XP_002308811.1| (hypothetical protein POPTR_0006s01890g [Populus trichocarpa])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-18
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  ++LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of CSPI01G15350 vs. NCBI nr
Match: gi|734420416|gb|KHN40803.1| (hypothetical protein glysoja_015170 [Glycine soja])

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 51/86 (59.30%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

The following BLAST results are available for this feature:

BLAST of CSPI01G15350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G15350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	4.7e-44	98.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	4.0e-19	49.47	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
B9HD48_POPTR	3.4e-18	53.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1	[more]
I1L024_SOYBN	7.5e-18	59.30	Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1	[more]
A0A0B2S7V4_GLYSO	7.5e-18	59.30	Uncharacterized protein OS=Glycine soja GN=glysoja_015170 PE=4 SV=1	[more]

BLAST of CSPI01G15350 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	2.4e-15	47.25	unknown protein	[more]
AT3G13175.1	3.4e-06	38.46	unknown protein	[more]

BLAST of CSPI01G15350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209900\|gb\|KGN64996.1\|	6.7e-44	98.95	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|659128598\|ref\|XP_008464280.1\|	3.1e-41	94.74	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	5.7e-19	49.47	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|224089775\|ref\|XP_002308811.1\|	4.8e-18	53.13	hypothetical protein POPTR_0006s01890g [Populus trichocarpa]	[more]
gi\|734420416\|gb\|KHN40803.1\|	1.1e-17	59.30	hypothetical protein glysoja_015170 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15350.1	CSPI01G15350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..90 score: 5.0
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..90 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15350	Cla010973	Watermelon (97103) v1	cpiwmB044
CSPI01G15350	Csa1G173160	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15350	MELO3C026073	Melon (DHL92) v3.5.1	cpimeB017
CSPI01G15350	ClCG01G010960	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15350	Lsi02G011570	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15350	MELO3C026073.2	Melon (DHL92) v3.6.1	cpimedB017
CSPI01G15350	Cla97C01G010690	Watermelon (97103) v2	cpiwmbB009
CSPI01G15350	Cucsa.319360	Cucumber (Gy14) v1	cgycpiB482
CSPI01G15350	CmaCh18G006150	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15350	Carg25601	Silver-seed gourd	carcpiB0055

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15350	Cucurbita maxima (Rimu)	cmacpiB215
CSPI01G15350	Cucurbita maxima (Rimu)	cmacpiB212
CSPI01G15350	Cucurbita maxima (Rimu)	cmacpiB222
CSPI01G15350	Cucurbita maxima (Rimu)	cmacpiB399
CSPI01G15350	Cucurbita moschata (Rifu)	cmocpiB385
CSPI01G15350	Cucumber (Chinese Long) v2	cpicuB049
CSPI01G15350	Melon (DHL92) v3.5.1	cpimeB031
CSPI01G15350	Watermelon (Charleston Gray)	cpiwcgB022
CSPI01G15350	Watermelon (Charleston Gray)	cpiwcgB023
CSPI01G15350	Watermelon (Charleston Gray)	cpiwcgB030
CSPI01G15350	Watermelon (97103) v1	cpiwmB050
CSPI01G15350	Watermelon (97103) v1	cpiwmB063
CSPI01G15350	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15350	Cucurbita pepo (Zucchini)	cpecpiB051
CSPI01G15350	Bottle gourd (USVL1VR-Ls)	cpilsiB019
CSPI01G15350	Bottle gourd (USVL1VR-Ls)	cpilsiB027
CSPI01G15350	Bottle gourd (USVL1VR-Ls)	cpilsiB038
CSPI01G15350	Melon (DHL92) v3.6.1	cpimedB025
CSPI01G15350	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G15350	Cucumber (Gy14) v2	cgybcpiB249
CSPI01G15350	Silver-seed gourd	carcpiB0053
CSPI01G15350	Silver-seed gourd	carcpiB0435
CSPI01G15350	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G15350	Cucumber (Chinese Long) v3	cpicucB052
CSPI01G15350	Watermelon (97103) v2	cpiwmbB005
CSPI01G15350	Watermelon (97103) v2	cpiwmbB008
CSPI01G15350	Wax gourd	cpiwgoB036
CSPI01G15350	Wild cucumber (PI 183967)	cpicpiB039
CSPI01G15350	Wild cucumber (PI 183967)	cpicpiB049
CSPI01G15350	Cucumber (Gy14) v1	cgycpiB017