MELO3C026073.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C026073.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransmembrane protein
Locationchr12 : 14946419 .. 14946885 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTGGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCA

mRNA sequence

ATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTGGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCA

Coding sequence (CDS)

ATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTGGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Homology
[Close]
BLAST of MELO3C026073.2 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 3.9e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of MELO3C026073.2 vs. NCBI nr
Match: EOY28965.1 (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 0 

Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           MDIQ KL+Q++   T+    S +++  +YVAPR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ +E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]
BLAST of MELO3C026073.2 vs. NCBI nr
Match: POE71785.1 (hypothetical protein CFP56_31885 [Quercus suber])

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++   T+   V +VLSL +Y APR L+ILA+FWPLFASTAVLL+ + AFGG
Sbjct: 1  MDIPDKLLQYRYHFTIAVFVPLVLSLLLYAAPRLLTILAYFWPLFASTAVLLMALIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            Q  +E HG +AG GILDYV G+PE+
Sbjct: 61 LSQFSNEAHGEKAGAGILDYVGGQPEH 87

[Close]
BLAST of MELO3C026073.2 vs. NCBI nr
Match: KRH11575.1 (hypothetical protein GLYMA_15G117900 [Glycine max])

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  IT+   VS+  SLF+Y AP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            ++ +E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

[Close]
BLAST of MELO3C026073.2 vs. NCBI nr
Match: CBI25748.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          M+IQ KL+Q++    +   VS++L+L   VAPRFL+ILA+FWPLF STAVLL+VM  FG 
Sbjct: 1  MEIQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQ 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPE 87
               +EIHG + GEG+LDYVAGRPE
Sbjct: 61 LSPPSTEIHGEKTGEGLLDYVAGRPE 86

[Close]
BLAST of MELO3C026073.2 vs. TAIR10
Match: AT4G16400.1 (unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 0 

Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           M+IQAKL++++    V   VSV+++  VY APR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

[Close]
BLAST of MELO3C026073.2 vs. TAIR10
Match: AT3G13175.1 (unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFG- 60
          M+ + KLL+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 -GGFQVGSEI-----HGMR-AGEGILDYVAG 84
               V S I      G++ A EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]
BLAST of MELO3C026073.2 vs. TrEMBL
Match: tr|A0A0A0LYI8|A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]
BLAST of MELO3C026073.2 vs. TrEMBL
Match: tr|A0A061GGG1|A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 0 

Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           MDIQ KL+Q++   T+    S +++  +YVAPR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ +E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]
BLAST of MELO3C026073.2 vs. TrEMBL
Match: tr|A0A2N9EZM9|A0A2N9EZM9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-18
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  +T+ A V +VLSL +Y APR ++ILAFFWPLFASTAVLL+ + AFGG
Sbjct: 1  MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            Q  +E HG +AG+GIL+YV G+PE+
Sbjct: 61 LSQFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]
BLAST of MELO3C026073.2 vs. TrEMBL
Match: tr|A0A2P4ITC9|A0A2P4ITC9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31885 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.0e-18
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++   T+   V +VLSL +Y APR L+ILA+FWPLFASTAVLL+ + AFGG
Sbjct: 1  MDIPDKLLQYRYHFTIAVFVPLVLSLLLYAAPRLLTILAYFWPLFASTAVLLMALIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            Q  +E HG +AG GILDYV G+PE+
Sbjct: 61 LSQFSNEAHGEKAGAGILDYVGGQPEH 87

[Close]
BLAST of MELO3C026073.2 vs. TrEMBL
Match: tr|I1MFR0|I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-17
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 0 

Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  IT+   VS+  SLF+Y AP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            ++ +E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

The following BLAST results are available for this feature:
BLAST of MELO3C026073.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64996.13.9e-4093.68hypothetical protein Csa_1G173160 [Cucumis sativus][more]
EOY28965.12.9e-1951.58Uncharacterized protein TCM_030419 [Theobroma cacao][more]
POE71785.11.2e-1759.77hypothetical protein CFP56_31885 [Quercus suber][more]
KRH11575.13.5e-1758.62hypothetical protein GLYMA_15G117900 [Glycine max][more]
CBI25748.33.5e-1758.14unnamed protein product, partial [Vitis vinifera][more]
BLAST of MELO3C026073.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G16400.11.1e-1548.35unknown protein[more]
AT3G13175.12.6e-0639.56unknown protein[more]
BLAST of MELO3C026073.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C026073.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LYI8|A0A0A0LYI8_CUCSA2.6e-4093.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1[more]
tr|A0A061GGG1|A0A061GGG1_THECC1.9e-1951.58Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1[more]
tr|A0A2N9EZM9|A0A2N9EZM9_FAGSY1.2e-1859.77Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1[more]
tr|A0A2P4ITC9|A0A2P4ITC9_QUESU8.0e-1859.77Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31885 PE=4 SV=1[more]
tr|I1MFR0|I1MFR0_SOYBN2.3e-1758.62Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G117900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026073.2.1MELO3C026073.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34125:SF1SUBFAMILY NOT NAMEDcoord: 1..91
NoneNo IPR availablePANTHERPTHR34125FAMILY NOT NAMEDcoord: 1..91

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C026073.2Csa1G173160Cucumber (Chinese Long) v2cumedB016
MELO3C026073.2CSPI01G15350Wild cucumber (PI 183967)cpimedB017
MELO3C026073.2Cucsa.319360Cucumber (Gy14) v1cgymedB529
MELO3C026073.2CmaCh18G006150Cucurbita maxima (Rimu)cmamedB426
MELO3C026073.2Lsi02G011570Bottle gourd (USVL1VR-Ls)lsimedB186
MELO3C026073.2CsGy1G015110Cucumber (Gy14) v2cgybmedB015
MELO3C026073.2Cla010973Watermelon (97103) v1medwmB156
MELO3C026073.2ClCG01G010960Watermelon (Charleston Gray)medwcgB135
MELO3C026073.2Cla97C01G010690Watermelon (97103) v2medwmbB134
MELO3C026073.2CsaV3_1G015520Cucumber (Chinese Long) v3cucmedB015
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026073.2Cucumber (Gy14) v1cgymedB527
MELO3C026073.2Cucurbita maxima (Rimu)cmamedB421
MELO3C026073.2Bottle gourd (USVL1VR-Ls)lsimedB193
MELO3C026073.2Watermelon (97103) v1medwmB162
MELO3C026073.2Silver-seed gourdcarmedB0968
MELO3C026073.2Cucumber (Chinese Long) v3cucmedB025
MELO3C026073.2Wax gourdmedwgoB174