Cucsa.319360 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.319360
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	BnaC07g33630D protein
Location	scaffold03078 : 63074 .. 63343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

mRNA sequence

GTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Coding sequence (CDS)

GTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ*

Homology

[Close]

BLAST of Cucsa.319360 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
          VLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT
Sbjct: 7  VLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 66

Query: 61 EIHGMRAGEGILDYVAGRPENGENHYKYQ 90
          EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 67 EIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cucsa.319360 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 4.9e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1   VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
           ++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGGG Q+ T
Sbjct: 96  LVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGSQLAT 155

Query: 61  EIHGMRAGEGILDYVAGRPENGENHYKYQ 90
           E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 156 EVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Cucsa.319360 vs. TrEMBL
Match: B9HD48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF-QVG 60
          +LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG    + 
Sbjct: 7  LLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGGTVTHMA 66

Query: 61 TEIHGMRAGEGILDYVAGRPENGENHYKYQ 90
          T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 67 TDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of Cucsa.319360 vs. TrEMBL
Match: A0A151T6F9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.0e-18
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
          +LQ++  IT+    S+  SL +YAAPRFL+ILA+FWPLFAST V LV + AFGG  +  +
Sbjct: 7  LLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVSRFSS 66

Query: 61 EIHGMRAGEGILDYVAGRPEN 82
          E HG +AGEG+LDYVAGR E+
Sbjct: 67 EDHGEKAGEGLLDYVAGRTEH 87

[Close]

BLAST of Cucsa.319360 vs. TrEMBL
Match: I1L024_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.2e-18
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
          +LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LV + AFGG  ++ T
Sbjct: 7  LLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGGVSKLST 66

Query: 61 EIHGMRAGEGILDYVAGRPE 81
          E HG +AGEG+L+YVAGR E
Sbjct: 67 EDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Cucsa.319360 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-15
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1   VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
           +++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L +   FGG  Q+  
Sbjct: 128 LMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGGFQQLSE 187

Query: 61  EIHGMRAGEGILDYVAGRPENGENH 86
           E      GE ++DYVAGRPE+   +
Sbjct: 188 E----ATGERLMDYVAGRPEDSHKN 208

[Close]

BLAST of Cucsa.319360 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 6.5e-07
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQV-- 60
          +L+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F     +  
Sbjct: 7  LLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFARTSDLPV 66

Query: 61 -GTEIHGMRAG-----EGILDYVAG 78
            T I G  AG     EGILDYV G
Sbjct: 67 SSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of Cucsa.319360 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
          VLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT
Sbjct: 7  VLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 66

Query: 61 EIHGMRAGEGILDYVAGRPENGENHYKYQ 90
          EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 67 EIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cucsa.319360 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
          +LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGGGFQVG+
Sbjct: 7  LLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGFQVGS 66

Query: 61 EIHGMRAGEGILDYVAGRPENGENHYKYQ 90
          EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 67 EIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cucsa.319360 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 7.0e-19
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1   VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
           ++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGGG Q+ T
Sbjct: 96  LVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGGGSQLAT 155

Query: 61  EIHGMRAGEGILDYVAGRPENGENHYKYQ 90
           E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 156 EVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Cucsa.319360 vs. NCBI nr
Match: gi|224089775|ref|XP_002308811.1| (hypothetical protein POPTR_0006s01890g [Populus trichocarpa])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 48/90 (53.33%), Postives = 65/90 (72.22%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF-QVG 60
          +LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG    + 
Sbjct: 7  LLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGGTVTHMA 66

Query: 61 TEIHGMRAGEGILDYVAGRPENGENHYKYQ 90
          T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 67 TDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of Cucsa.319360 vs. NCBI nr
Match: gi|1012351459|gb|KYP62648.1| (hypothetical protein KK1_017189 [Cajanus cajan])

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 1


Query: 1  VLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGT 60
          +LQ++  IT+    S+  SL +YAAPRFL+ILA+FWPLFAST V LV + AFGG  +  +
Sbjct: 7  LLQYRYHITIAIVASLSFSLLLYAAPRFLTILAYFWPLFASTTVFLVAIIAFGGVSRFSS 66

Query: 61 EIHGMRAGEGILDYVAGRPEN 82
          E HG +AGEG+LDYVAGR E+
Sbjct: 67 EDHGEKAGEGLLDYVAGRTEH 87

The following BLAST results are available for this feature:

BLAST of Cucsa.319360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	1.8e-42	98.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	4.9e-19	48.31	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
B9HD48_POPTR	1.1e-18	53.33	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1	[more]
A0A151T6F9_CAJCA	7.0e-18	58.02	Uncharacterized protein OS=Cajanus cajan GN=KK1_017189 PE=4 SV=1	[more]
I1L024_SOYBN	9.2e-18	58.75	Uncharacterized protein OS=Glycine max GN=GLYMA_09G013000 PE=4 SV=1	[more]

BLAST of Cucsa.319360 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	3.8e-15	45.88	unknown protein	[more]
AT3G13175.1	6.5e-07	38.82	unknown protein	[more]

BLAST of Cucsa.319360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209900\|gb\|KGN64996.1\|	2.6e-42	98.88	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|659128598\|ref\|XP_008464280.1\|	1.4e-40	95.51	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	7.0e-19	48.31	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|224089775\|ref\|XP_002308811.1\|	1.6e-18	53.33	hypothetical protein POPTR_0006s01890g [Populus trichocarpa]	[more]
gi\|1012351459\|gb\|KYP62648.1\|	1.0e-17	58.02	hypothetical protein KK1_017189 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.319360.1	Cucsa.319360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..83 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.319360	Cla010973	Watermelon (97103) v1	cgywmB581
Cucsa.319360	Csa1G173160	Cucumber (Chinese Long) v2	cgycuB457
Cucsa.319360	MELO3C026073	Melon (DHL92) v3.5.1	cgymeB528
Cucsa.319360	ClCG01G010960	Watermelon (Charleston Gray)	cgywcgB552
Cucsa.319360	CSPI01G15350	Wild cucumber (PI 183967)	cgycpiB482
Cucsa.319360	CmaCh18G006150	Cucurbita maxima (Rimu)	cgycmaB0884
Cucsa.319360	CmoCh18G005770	Cucurbita moschata (Rifu)	cgycmoB0882
Cucsa.319360	Lsi02G011570	Bottle gourd (USVL1VR-Ls)	cgylsiB521
Cucsa.319360	Cp4.1LG09g06440	Cucurbita pepo (Zucchini)	cgycpeB0840
Cucsa.319360	MELO3C026073.2	Melon (DHL92) v3.6.1	cgymedB529
Cucsa.319360	CsaV3_1G015520	Cucumber (Chinese Long) v3	cgycucB496
Cucsa.319360	Cla97C01G010690	Watermelon (97103) v2	cgywmbB557

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.319360	Melon (DHL92) v3.5.1	cgymeB527
Cucsa.319360	Bottle gourd (USVL1VR-Ls)	cgylsiB522
Cucsa.319360	Melon (DHL92) v3.6.1	cgymedB527
Cucsa.319360	Watermelon (97103) v2	cgywmbB558
Cucsa.319360	Wax gourd	cgywgoB640