Cla97C01G010690 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G010690
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein
Location	Cla97Chr01 : 16357961 .. 16358248 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCTCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGCAATGGTCGCCTTTGGAGGCGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGGGAAAACCATTATAAGTACCAATAA

mRNA sequence

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCTCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGCAATGGTCGCCTTTGGAGGCGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGGGAAAACCATTATAAGTACCAATAA

Coding sequence (CDS)

ATGGACATTCAAACAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTGGTTCTGTCATTGTTTGTATATGCAGCTCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCCGTACTCTTGGTGGCAATGGTCGCCTTTGGAGGCGGTTTCCAAGTTGGAACCGAAGTTCATGGTGTAAGAGCAGGTGAAGGGATTCTAGATTATGTCGCAGGACGACCTGAATATGGGGAAAACCATTATAAGTACCAATAA

Protein sequence

MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGGGFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ

Homology

[Close]

BLAST of Cla97C01G010690 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.6e-38
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLV M AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVGTE+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cla97C01G010690 vs. NCBI nr
Match: EOY28965.1 (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 5.8e-20
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
           MDIQ K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LVA++AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
           G Q+ TEVHG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Cla97C01G010690 vs. NCBI nr
Match: POE71785.1 (hypothetical protein CFP56_31885 [Quercus suber])

HSP 1 Score: 102.4 bits (254), Expect = 8.4e-19
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++   T+   V +VLSL +YAAPR L+ILA+FWPLFASTAVLL+A++AFGG
Sbjct: 1  MDIPDKLLQYRYHFTIAVFVPLVLSLLLYAAPRLLTILAYFWPLFASTAVLLMALIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            Q   E HG +AG GILDYV G+PE+
Sbjct: 61 LSQFSNEAHGEKAGAGILDYVGGQPEH 87

[Close]

BLAST of Cla97C01G010690 vs. NCBI nr
Match: KRH11575.1 (hypothetical protein GLYMA_15G117900 [Glycine max])

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SLF+YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            ++  E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

[Close]

BLAST of Cla97C01G010690 vs. NCBI nr
Match: KHN40803.1 (hypothetical protein glysoja_015170 [Glycine soja] >KRH36587.1 hypothetical protein GLYMA_09G013000 [Glycine max])

HSP 1 Score: 100.1 bits (248), Expect = 4.2e-18
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Cla97C01G010690 vs. TrEMBL
Match: tr|A0A0A0LYI8|A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  KVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLV M AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
          GFQVGTE+HG+RAGEGILDYVAGRPE GENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of Cla97C01G010690 vs. TrEMBL
Match: tr|A0A2N9EZM9|A0A2N9EZM9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  +T+ A V +VLSL +YAAPR ++ILAFFWPLFASTAVLL+A++AFGG
Sbjct: 1  MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            Q  TE HG +AG+GIL+YV G+PE+
Sbjct: 61 LSQFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of Cla97C01G010690 vs. TrEMBL
Match: tr|A0A061GGG1|A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-20
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
           MDIQ K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LVA++AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPEYGENHYKYQ 96
           G Q+ TEVHG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of Cla97C01G010690 vs. TrEMBL
Match: tr|A0A2P4ITC9|A0A2P4ITC9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31885 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.6e-19
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++   T+   V +VLSL +YAAPR L+ILA+FWPLFASTAVLL+A++AFGG
Sbjct: 1  MDIPDKLLQYRYHFTIAVFVPLVLSLLLYAAPRLLTILAYFWPLFASTAVLLMALIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPEY 88
            Q   E HG +AG GILDYV G+PE+
Sbjct: 61 LSQFSNEAHGEKAGAGILDYVGGQPEH 87

[Close]

BLAST of Cla97C01G010690 vs. TrEMBL
Match: tr|I1L024|I1L024_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G013000 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          MDI  K+LQ++  IT+   VS+  SL +YAAP FL+ILA+FWPLFAST V LVA++AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLLLYAAPHFLAILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGTEVHGVRAGEGILDYVAGRPE 87
            ++ TE HG +AGEG+L+YVAGR E
Sbjct: 61 VSKLSTEDHGEKAGEGLLNYVAGRAE 86

[Close]

BLAST of Cla97C01G010690 vs. TAIR10
Match: AT4G16400.1 (unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-15
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1   MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
           M+IQ K+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L   + FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEVHGVRAGEGILDYVAGRPE 87
             Q+  E      GE ++DYVAGRPE
Sbjct: 182 FQQLSEEA----TGERLMDYVAGRPE 203

[Close]

BLAST of Cla97C01G010690 vs. TAIR10
Match: AT3G13175.1 (unknown protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.6e-06
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 0


Query: 1  MDIQTKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVAMVAFGG 60
          M+ + K+L+ K QI     +S++    V  +P FL++L++FWPLF STA+ L A+  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEVHGVRAG-----EGILDYVAG 84
             +    T + G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:

BLAST of Cla97C01G010690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64996.1	1.6e-38	91.58	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
EOY28965.1	5.8e-20	52.63	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
POE71785.1	8.4e-19	60.92	hypothetical protein CFP56_31885 [Quercus suber]	[more]
KRH11575.1	4.2e-18	59.77	hypothetical protein GLYMA_15G117900 [Glycine max]	[more]
KHN40803.1	4.2e-18	60.47	hypothetical protein glysoja_015170 [Glycine soja] >KRH36587.1 hypothetical prot...	[more]

BLAST of Cla97C01G010690 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYI8\|A0A0A0LYI8_CUCSA	1.1e-38	91.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
tr\|A0A2N9EZM9\|A0A2N9EZM9_FAGSY	3.9e-20	62.07	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]
tr\|A0A061GGG1\|A0A061GGG1_THECC	3.9e-20	52.63	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1	[more]
tr\|A0A2P4ITC9\|A0A2P4ITC9_QUESU	5.6e-19	60.92	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31885 PE=4 SV=1	[more]
tr\|I1L024\|I1L024_SOYBN	2.8e-18	60.47	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G013000 PE=4 SV=1	[more]

BLAST of Cla97C01G010690 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G010690 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	2.4e-15	50.00	unknown protein	[more]
AT3G13175.1	2.6e-06	38.46	unknown protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G010690.1	Cla97C01G010690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR34125:SF1	SUBFAMILY NOT NAMED	coord: 1..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G010690	Cla010973	Watermelon (97103) v1	wmwmbB246
Cla97C01G010690	Csa1G173160	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G010690	MELO3C026073	Melon (DHL92) v3.5.1	mewmbB145
Cla97C01G010690	ClCG01G010960	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G010690	CSPI01G15350	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G010690	Cucsa.319360	Cucumber (Gy14) v1	cgywmbB557
Cla97C01G010690	CmaCh18G006150	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G010690	CmoCh18G005770	Cucurbita moschata (Rifu)	cmowmbB380
Cla97C01G010690	Lsi02G011570	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G010690	CsGy1G015110	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G010690	MELO3C026073.2	Melon (DHL92) v3.6.1	medwmbB134
Cla97C01G010690	CsaV3_1G015520	Cucumber (Chinese Long) v3	cucwmbB008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G010690	Silver-seed gourd	carwmbB0050
Cla97C01G010690	Silver-seed gourd	carwmbB0778
Cla97C01G010690	Cucumber (Gy14) v1	cgywmbB325
Cla97C01G010690	Cucurbita moschata (Rifu)	cmowmbB042
Cla97C01G010690	Cucumber (Chinese Long) v3	cucwmbB007
Cla97C01G010690	Bottle gourd (USVL1VR-Ls)	lsiwmbB159
Cla97C01G010690	Melon (DHL92) v3.6.1	medwmbB126
Cla97C01G010690	Melon (DHL92) v3.5.1	mewmbB138
Cla97C01G010690	Watermelon (97103) v1	wmwmbB239
Cla97C01G010690	Wax gourd	wgowmbB460