MELO3C026073 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026073
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_12
Location	chr12 : 14915405 .. 14915871 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTGGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCA

mRNA sequence

ATCGTCACCCATAGCAACCTCCTTTTTTTCTCTATATTTCTCTCATTCTCTTTCTCCATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTGGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAAAGAGATTATTTGTCACAATCAAATTTAAACAACATATATTCAAAATTTCTGTCTGTTCATTTTGTATATTTAAACTACCAATGAGTTAGTTCAGTGAAATAACCACATGGATGCTCAATGCA

Coding sequence (CDS)

ATGGACATCCAAGCAAAGCTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGTAGCCCCTCGGTTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTGCTCTTGGTGGTAATGACCGCCTTTGGAGGTGGTTTCCAAGTCGGAAGCGAGATTCATGGTATGAGAGCTGGTGAAGGAATTCTGGATTATGTTGCAGGACGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGGGFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ*

Homology

[Close]

BLAST of MELO3C026073 vs. TrEMBL
Match: A0A0A0LYI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.0e-43
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of MELO3C026073 vs. TrEMBL
Match: A0A061GGG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-22
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           MDIQ KL+Q++   T+    S +++  +YVAPR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ +E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of MELO3C026073 vs. TrEMBL
Match: D7T5G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-20
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          M+IQ KL+Q++    +   VS++L+L   VAPRFL+ILA+FWPLF STAVLL+VM  FG 
Sbjct: 1  MEIQTKLMQYQYHFIITVVVSIILALLFQVAPRFLTILAYFWPLFVSTAVLLMVMIVFGQ 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPE 87
               +EIHG + GEG+LDYVAGRPE
Sbjct: 61 LSPPSTEIHGEKTGEGLLDYVAGRPE 86

[Close]

BLAST of MELO3C026073 vs. TrEMBL
Match: I1MFR0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-20
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  IT+   VS+  SLF+Y AP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            ++ +E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

[Close]

BLAST of MELO3C026073 vs. TrEMBL
Match: B9HD48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-20
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  +LLQ++    +    SVVLSL +Y APR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + ++ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of MELO3C026073 vs. TAIR10
Match: AT4G16400.1 (AT4G16400.1 unknown protein)

HSP 1 Score: 88.2 bits (217), Expect = 3.0e-18
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1


Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           M+IQAKL++++    V   VSV+++  VY APR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

[Close]

BLAST of MELO3C026073 vs. TAIR10
Match: AT3G13175.1 (AT3G13175.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 9.7e-09
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFG- 60
          M+ + KLL+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 -GGFQVGSEI-----HGMR-AGEGILDYVAG 84
               V S I      G++ A EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

[Close]

BLAST of MELO3C026073 vs. NCBI nr
Match: gi|659128598|ref|XP_008464280.1| (PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of MELO3C026073 vs. NCBI nr
Match: gi|700209900|gb|KGN64996.1| (hypothetical protein Csa_1G173160 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.3e-43
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI AK+LQHKDQ+TVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of MELO3C026073 vs. NCBI nr
Match: gi|590627047|ref|XP_007026343.1| (Uncharacterized protein TCM_030419 [Theobroma cacao])

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-22
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 1   MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
           MDIQ KL+Q++   T+    S +++  +YVAPR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
           G Q+ +E+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of MELO3C026073 vs. NCBI nr
Match: gi|224089775|ref|XP_002308811.1| (hypothetical protein POPTR_0006s01890g [Populus trichocarpa])

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 50/96 (52.08%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  +LLQ++    +    SVVLSL +Y APR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 96
              + ++ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of MELO3C026073 vs. NCBI nr
Match: gi|947062314|gb|KRH11575.1| (hypothetical protein GLYMA_15G117900 [Glycine max])

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60
          MDI  KLLQ++  IT+   VS+  SLF+Y AP FL+ILA+FWPLFAST V LV + AFGG
Sbjct: 1  MDISEKLLQYRYHITIAIVVSLSFSLFLYAAPHFLTILAYFWPLFASTTVFLVAIIAFGG 60

Query: 61 GFQVGSEIHGMRAGEGILDYVAGRPEN 88
            ++ +E HG +AGEG+LDYVA R E+
Sbjct: 61 VSKLSNEDHGEKAGEGLLDYVAERTEH 87

The following BLAST results are available for this feature:

BLAST of MELO3C026073 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8_CUCSA	3.0e-43	93.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G173160 PE=4 SV=1	[more]
A0A061GGG1_THECC	2.3e-22	51.58	Uncharacterized protein OS=Theobroma cacao GN=TCM_030419 PE=4 SV=1	[more]
D7T5G5_VITVI	4.7e-20	58.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0194g00220 PE=4 SV=...	[more]
I1MFR0_SOYBN	4.7e-20	58.62	Uncharacterized protein OS=Glycine max GN=GLYMA_15G117900 PE=4 SV=1	[more]
B9HD48_POPTR	4.7e-20	52.08	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01890g PE=4 SV=1	[more]

BLAST of MELO3C026073 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16400.1	3.0e-18	48.35	unknown protein	[more]
AT3G13175.1	9.7e-09	39.56	unknown protein	[more]

BLAST of MELO3C026073 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128598\|ref\|XP_008464280.1\|	1.2e-45	100.00	PREDICTED: uncharacterized protein LOC103502206 [Cucumis melo]	[more]
gi\|700209900\|gb\|KGN64996.1\|	4.3e-43	93.68	hypothetical protein Csa_1G173160 [Cucumis sativus]	[more]
gi\|590627047\|ref\|XP_007026343.1\|	3.2e-22	51.58	Uncharacterized protein TCM_030419 [Theobroma cacao]	[more]
gi\|224089775\|ref\|XP_002308811.1\|	6.7e-20	52.08	hypothetical protein POPTR_0006s01890g [Populus trichocarpa]	[more]
gi\|947062314\|gb\|KRH11575.1\|	6.7e-20	58.62	hypothetical protein GLYMA_15G117900 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44133	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026073T1	MELO3C026073T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44133	MU44133	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	FAMILY NOT NAMED	coord: 1..89 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026073	Csa1G173160	Cucumber (Chinese Long) v2	cumeB004
MELO3C026073	Cla010973	Watermelon (97103) v1	mewmB160
MELO3C026073	ClCG01G010960	Watermelon (Charleston Gray)	mewcgB143
MELO3C026073	Cla97C01G010690	Watermelon (97103) v2	mewmbB145
MELO3C026073	CSPI01G15350	Wild cucumber (PI 183967)	cpimeB017
MELO3C026073	Cucsa.319360	Cucumber (Gy14) v1	cgymeB528
MELO3C026073	CmaCh18G006150	Cucurbita maxima (Rimu)	cmameB367
MELO3C026073	CmoCh18G005770	Cucurbita moschata (Rifu)	cmomeB358
MELO3C026073	Lsi02G011570	Bottle gourd (USVL1VR-Ls)	lsimeB176
MELO3C026073	Cp4.1LG09g06440	Cucurbita pepo (Zucchini)	cpemeB032
MELO3C026073	Carg25601	Silver-seed gourd	carmeB0050
MELO3C026073	CsaV3_1G015520	Cucumber (Chinese Long) v3	cucmeB016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026073	Cucumber (Gy14) v1	cgymeB018
MELO3C026073	Cucumber (Gy14) v1	cgymeB527
MELO3C026073	Cucurbita maxima (Rimu)	cmameB203
MELO3C026073	Cucurbita maxima (Rimu)	cmameB361
MELO3C026073	Cucurbita maxima (Rimu)	cmameB369
MELO3C026073	Cucurbita moschata (Rifu)	cmomeB189
MELO3C026073	Wild cucumber (PI 183967)	cpimeB451
MELO3C026073	Watermelon (Charleston Gray)	mewcgB136
MELO3C026073	Watermelon (97103) v1	mewmB164
MELO3C026073	Watermelon (97103) v1	mewmB165
MELO3C026073	Cucurbita pepo (Zucchini)	cpemeB474
MELO3C026073	Bottle gourd (USVL1VR-Ls)	lsimeB129
MELO3C026073	Bottle gourd (USVL1VR-Ls)	lsimeB184
MELO3C026073	Cucumber (Gy14) v2	cgybmeB016
MELO3C026073	Cucumber (Gy14) v2	cgybmeB396
MELO3C026073	Silver-seed gourd	carmeB0047
MELO3C026073	Cucumber (Chinese Long) v3	cucmeB029
MELO3C026073	Watermelon (97103) v2	mewmbB139
MELO3C026073	Wax gourd	mewgoB172